data_RTF
# 
_chem_comp.id                                    RTF 
_chem_comp.name                                  "3-[[6-(3,5-dimethylpyridin-2-yl)oxy-1-methyl-benzimidazol-2-yl]methoxy]benzoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H21 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-02-02 
_chem_comp.pdbx_modified_date                    2018-10-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        403.431 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RTF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Z6S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RTF C1  C1  C 0 1 Y N N 10.517 49.439 91.925 -3.528 -1.425 -0.380 C1  RTF 1  
RTF C2  C2  C 0 1 Y N N 9.901  48.736 90.885 -2.524 -1.143 0.529  C2  RTF 2  
RTF C3  C3  C 0 1 Y N N 12.131 50.363 90.367 -1.929 -2.292 -1.939 C3  RTF 3  
RTF C4  C4  C 0 1 Y N N 11.633 50.254 91.667 -3.222 -2.002 -1.610 C4  RTF 4  
RTF C5  C5  C 0 1 Y N N 11.524 49.674 89.353 -0.899 -2.009 -1.037 C5  RTF 5  
RTF C6  C6  C 0 1 Y N N 10.389 48.846 89.615 -1.206 -1.433 0.207  C6  RTF 6  
RTF N7  N1  N 0 1 Y N N 10.001 48.288 88.403 -0.000 -1.277 0.862  N7  RTF 7  
RTF C8  C7  C 0 1 Y N N 10.856 48.763 87.492 0.974  -1.743 0.034  C8  RTF 8  
RTF N9  N2  N 0 1 Y N N 11.780 49.586 87.989 0.449  -2.172 -1.077 N9  RTF 9  
RTF C10 C8  C 0 1 N N N 8.862  47.370 88.252 0.194  -0.713 2.200  C10 RTF 10 
RTF C11 C9  C 0 1 N N N 10.788 48.407 86.021 2.446  -1.761 0.356  C11 RTF 11 
RTF O12 O1  O 0 1 N N N 9.454  48.551 85.553 3.044  -0.538 -0.079 O12 RTF 12 
RTF O13 O2  O 0 1 N N N 10.009 49.328 93.214 -4.821 -1.143 -0.068 O13 RTF 13 
RTF C14 C10 C 0 1 Y N N 9.251  49.813 84.975 4.377  -0.392 0.138  C14 RTF 14 
RTF C15 C11 C 0 1 Y N N 7.968  50.171 84.567 5.020  0.769  -0.259 C15 RTF 15 
RTF C16 C12 C 0 1 Y N N 7.732  51.416 83.989 6.389  0.915  -0.033 C16 RTF 16 
RTF C17 C13 C 0 1 Y N N 8.784  52.310 83.817 7.102  -0.110 0.592  C17 RTF 17 
RTF C18 C14 C 0 1 Y N N 10.067 51.960 84.222 6.451  -1.262 0.983  C18 RTF 18 
RTF C19 C15 C 0 1 Y N N 10.303 50.716 84.799 5.094  -1.404 0.764  C19 RTF 19 
RTF C20 C16 C 0 1 N N N 6.379  51.782 83.563 7.082  2.150  -0.454 C20 RTF 20 
RTF O21 O3  O 0 1 N N N 5.520  50.958 83.461 8.404  2.289  -0.235 O21 RTF 21 
RTF O22 O4  O 0 1 N N N 6.193  53.095 83.296 6.460  3.040  -0.998 O22 RTF 22 
RTF C23 C17 C 0 1 Y N N 10.859 48.639 94.079 -5.194 0.161  -0.016 C23 RTF 23 
RTF C24 C18 C 0 1 Y N N 10.793 48.962 95.431 -6.471 0.494  0.419  C24 RTF 24 
RTF C25 C19 C 0 1 Y N N 11.623 48.294 96.316 -6.838 1.827  0.467  C25 RTF 25 
RTF C26 C20 C 0 1 Y N N 12.490 47.331 95.835 -5.911 2.784  0.078  C26 RTF 26 
RTF C27 C21 C 0 1 Y N N 12.487 47.075 94.472 -4.660 2.381  -0.343 C27 RTF 27 
RTF N28 N3  N 0 1 Y N N 11.695 47.704 93.591 -4.336 1.102  -0.373 N28 RTF 28 
RTF C29 C22 C 0 1 N N N 9.838  50.013 95.918 -7.443 -0.581 0.831  C29 RTF 29 
RTF C30 C23 C 0 1 N N N 13.406 46.584 96.761 -6.267 4.248  0.114  C30 RTF 30 
RTF H1  H1  H 0 1 N N N 9.044  48.110 91.085 -2.765 -0.700 1.484  H1  RTF 31 
RTF H2  H2  H 0 1 N N N 12.989 50.987 90.164 -1.703 -2.740 -2.895 H2  RTF 32 
RTF H3  H3  H 0 1 N N N 12.105 50.795 92.474 -4.015 -2.221 -2.309 H3  RTF 33 
RTF H4  H4  H 0 1 N N N 8.389  47.207 89.232 0.141  -1.510 2.942  H4  RTF 34 
RTF H5  H5  H 0 1 N N N 8.128  47.807 87.559 1.171  -0.231 2.253  H5  RTF 35 
RTF H6  H6  H 0 1 N N N 9.217  46.409 87.852 -0.585 0.023  2.401  H6  RTF 36 
RTF H7  H7  H 0 1 N N N 11.114 47.366 85.882 2.581  -1.868 1.433  H7  RTF 37 
RTF H8  H8  H 0 1 N N N 11.449 49.077 85.452 2.920  -2.599 -0.155 H8  RTF 38 
RTF H9  H9  H 0 1 N N N 7.150  49.478 84.700 4.463  1.558  -0.742 H9  RTF 39 
RTF H10 H10 H 0 1 N N N 8.604  53.276 83.369 8.162  -0.002 0.768  H10 RTF 40 
RTF H11 H11 H 0 1 N N N 10.883 52.655 84.088 7.004  -2.055 1.466  H11 RTF 41 
RTF H12 H12 H 0 1 N N N 11.301 50.448 85.112 4.590  -2.308 1.072  H12 RTF 42 
RTF H13 H13 H 0 1 N N N 4.716  51.372 83.171 8.813  3.114  -0.528 H13 RTF 43 
RTF H14 H14 H 0 1 N N N 11.593 48.523 97.371 -7.824 2.116  0.800  H14 RTF 44 
RTF H15 H15 H 0 1 N N N 13.165 46.322 94.097 -3.935 3.122  -0.647 H15 RTF 45 
RTF H16 H16 H 0 1 N N N 8.876  49.545 96.174 -7.333 -0.782 1.896  H16 RTF 46 
RTF H17 H17 H 0 1 N N N 10.256 50.503 96.810 -8.460 -0.249 0.626  H17 RTF 47 
RTF H18 H18 H 0 1 N N N 9.682  50.762 95.127 -7.238 -1.492 0.267  H18 RTF 48 
RTF H19 H19 H 0 1 N N N 14.359 47.126 96.850 -6.009 4.661  1.089  H19 RTF 49 
RTF H20 H20 H 0 1 N N N 12.937 46.501 97.753 -5.713 4.776  -0.662 H20 RTF 50 
RTF H21 H21 H 0 1 N N N 13.593 45.577 96.359 -7.337 4.367  -0.059 H21 RTF 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RTF O22 C20 DOUB N N 1  
RTF O21 C20 SING N N 2  
RTF C20 C16 SING N N 3  
RTF C17 C16 DOUB Y N 4  
RTF C17 C18 SING Y N 5  
RTF C16 C15 SING Y N 6  
RTF C18 C19 DOUB Y N 7  
RTF C15 C14 DOUB Y N 8  
RTF C19 C14 SING Y N 9  
RTF C14 O12 SING N N 10 
RTF O12 C11 SING N N 11 
RTF C11 C8  SING N N 12 
RTF C8  N9  DOUB Y N 13 
RTF C8  N7  SING Y N 14 
RTF N9  C5  SING Y N 15 
RTF C10 N7  SING N N 16 
RTF N7  C6  SING Y N 17 
RTF C5  C6  DOUB Y N 18 
RTF C5  C3  SING Y N 19 
RTF C6  C2  SING Y N 20 
RTF C3  C4  DOUB Y N 21 
RTF C2  C1  DOUB Y N 22 
RTF C4  C1  SING Y N 23 
RTF C1  O13 SING N N 24 
RTF O13 C23 SING N N 25 
RTF N28 C23 DOUB Y N 26 
RTF N28 C27 SING Y N 27 
RTF C23 C24 SING Y N 28 
RTF C27 C26 DOUB Y N 29 
RTF C24 C29 SING N N 30 
RTF C24 C25 DOUB Y N 31 
RTF C26 C25 SING Y N 32 
RTF C26 C30 SING N N 33 
RTF C2  H1  SING N N 34 
RTF C3  H2  SING N N 35 
RTF C4  H3  SING N N 36 
RTF C10 H4  SING N N 37 
RTF C10 H5  SING N N 38 
RTF C10 H6  SING N N 39 
RTF C11 H7  SING N N 40 
RTF C11 H8  SING N N 41 
RTF C15 H9  SING N N 42 
RTF C17 H10 SING N N 43 
RTF C18 H11 SING N N 44 
RTF C19 H12 SING N N 45 
RTF O21 H13 SING N N 46 
RTF C25 H14 SING N N 47 
RTF C27 H15 SING N N 48 
RTF C29 H16 SING N N 49 
RTF C29 H17 SING N N 50 
RTF C29 H18 SING N N 51 
RTF C30 H19 SING N N 52 
RTF C30 H20 SING N N 53 
RTF C30 H21 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RTF InChI            InChI                1.03  "InChI=1S/C23H21N3O4/c1-14-9-15(2)22(24-12-14)30-18-7-8-19-20(11-18)26(3)21(25-19)13-29-17-6-4-5-16(10-17)23(27)28/h4-12H,13H2,1-3H3,(H,27,28)" 
RTF InChIKey         InChI                1.03  GEGLFSVXCSGSOB-UHFFFAOYSA-N                                                                                                                     
RTF SMILES_CANONICAL CACTVS               3.385 "Cn1c(COc2cccc(c2)C(O)=O)nc3ccc(Oc4ncc(C)cc4C)cc13"                                                                                             
RTF SMILES           CACTVS               3.385 "Cn1c(COc2cccc(c2)C(O)=O)nc3ccc(Oc4ncc(C)cc4C)cc13"                                                                                             
RTF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc(c(nc1)Oc2ccc3c(c2)n(c(n3)COc4cccc(c4)C(=O)O)C)C"                                                                                         
RTF SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1cc(c(nc1)Oc2ccc3c(c2)n(c(n3)COc4cccc(c4)C(=O)O)C)C"                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RTF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-[[6-(3,5-dimethylpyridin-2-yl)oxy-1-methyl-benzimidazol-2-yl]methoxy]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RTF "Create component" 2018-02-02 PDBJ 
RTF "Initial release"  2018-10-17 RCSB 
# 
