data_O5F
# 
_chem_comp.id                                    O5F 
_chem_comp.name                                  "(2P)-2-(isoquinolin-4-yl)-1-[4-(methylamino)-4-oxobutyl]-N-[(1S)-1-(naphthalen-2-yl)ethyl]-1H-benzimidazole-7-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H31 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-22 
_chem_comp.pdbx_modified_date                    2023-07-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        541.642 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O5F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7UR9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O5F N1  N1  N 0 1 Y N N 21.440 -4.824 25.376 -1.578 0.857  0.089  N1  O5F 1  
O5F C7  C1  C 0 1 Y N N 22.543 -3.126 33.203 8.901  0.196  2.242  C7  O5F 2  
O5F C8  C2  C 0 1 Y N N 22.599 -2.093 32.278 8.310  -1.028 2.551  C8  O5F 3  
O5F N2  N2  N 0 1 N N N 19.960 -6.828 29.646 -1.542 -5.240 -0.871 N2  O5F 4  
O5F C9  C3  C 0 1 Y N N 23.284 -2.244 31.107 7.137  -1.405 1.973  C9  O5F 5  
O5F O1  O1  O 0 1 N N N 24.155 -6.128 26.654 0.728  -0.534 -1.254 O1  O5F 6  
O5F C1  C4  C 0 1 N N S 26.195 -4.964 28.112 3.419  -0.436 -1.113 C1  O5F 7  
O5F C5  C5  C 0 1 Y N N 23.874 -4.527 31.742 7.108  0.697  0.741  C5  O5F 8  
O5F C6  C6  C 0 1 Y N N 23.157 -4.322 32.950 8.319  1.052  1.358  C6  O5F 9  
O5F N3  N3  N 0 1 Y N N 16.773 -3.842 25.100 -4.371 -0.423 3.247  N3  O5F 10 
O5F C4  C7  C 0 1 Y N N 24.513 -5.749 31.418 6.477  1.554  -0.176 C4  O5F 11 
O5F C3  C8  C 0 1 Y N N 25.217 -5.884 30.255 5.304  1.177  -0.754 C3  O5F 12 
O5F C2  C9  C 0 1 Y N N 25.336 -4.828 29.354 4.719  -0.052 -0.453 C2  O5F 13 
O5F N4  N4  N 0 1 Y N N 20.809 -3.976 23.388 -2.853 2.636  -0.056 N4  O5F 14 
O5F N   N5  N 0 1 N N N 25.535 -4.374 26.942 2.547  0.738  -1.195 N   O5F 15 
O5F C   C10 C 0 1 N N N 27.571 -4.329 28.290 3.698  -0.964 -2.522 C   O5F 16 
O5F O   O2  O 0 1 N N N 18.900 -4.967 28.997 -2.584 -3.580 -1.909 O   O5F 17 
O5F C10 C11 C 0 1 Y N N 23.954 -3.460 30.812 6.510  -0.551 1.051  C10 O5F 18 
O5F C11 C12 C 0 1 Y N N 24.702 -3.646 29.627 5.298  -0.906 0.434  C11 O5F 19 
O5F C12 C13 C 0 1 N N N 24.560 -5.024 26.288 1.210  0.582  -1.262 C12 O5F 20 
O5F C13 C14 C 0 1 Y N N 23.989 -4.356 25.068 0.332  1.765  -1.344 C13 O5F 21 
O5F C14 C15 C 0 1 Y N N 24.875 -3.719 24.196 0.730  2.884  -2.075 C14 O5F 22 
O5F C15 C16 C 0 1 Y N N 24.433 -3.175 22.996 -0.093 3.994  -2.153 C15 O5F 23 
O5F C16 C17 C 0 1 Y N N 23.096 -3.257 22.633 -1.314 4.012  -1.515 C16 O5F 24 
O5F C17 C18 C 0 1 Y N N 22.195 -3.868 23.506 -1.736 2.902  -0.776 C17 O5F 25 
O5F C18 C19 C 0 1 Y N N 22.628 -4.403 24.722 -0.907 1.770  -0.690 C18 O5F 26 
O5F C19 C20 C 0 1 N N N 21.296 -5.341 26.739 -1.108 -0.480 0.461  C19 O5F 27 
O5F C20 C21 C 0 1 N N N 21.527 -4.281 27.803 -1.721 -1.516 -0.483 C20 O5F 28 
O5F C21 C22 C 0 1 N N N 21.282 -4.859 29.193 -1.230 -2.913 -0.095 C21 O5F 29 
O5F C22 C23 C 0 1 N N N 19.942 -5.552 29.276 -1.834 -3.934 -1.024 C22 O5F 30 
O5F C23 C24 C 0 1 N N N 18.760 -7.647 29.668 -2.129 -6.233 -1.775 C23 O5F 31 
O5F C24 C25 C 0 1 Y N N 20.409 -4.543 24.510 -2.766 1.433  0.459  C24 O5F 32 
O5F C25 C26 C 0 1 Y N N 18.984 -4.792 24.816 -3.793 0.793  1.304  C25 O5F 33 
O5F C26 C27 C 0 1 Y N N 18.473 -6.113 25.021 -5.205 0.813  0.924  C26 O5F 34 
O5F C27 C28 C 0 1 Y N N 19.269 -7.291 25.036 -5.658 1.429  -0.245 C27 O5F 35 
O5F C28 C29 C 0 1 Y N N 18.709 -8.518 25.255 -6.990 1.411  -0.541 C28 O5F 36 
O5F C29 C30 C 0 1 Y N N 17.340 -8.646 25.462 -7.903 0.787  0.306  C29 O5F 37 
O5F C30 C31 C 0 1 Y N N 16.532 -7.545 25.462 -7.495 0.176  1.454  C30 O5F 38 
O5F C31 C32 C 0 1 Y N N 17.073 -6.252 25.247 -6.132 0.176  1.789  C31 O5F 39 
O5F C32 C33 C 0 1 Y N N 16.287 -5.070 25.267 -5.650 -0.437 2.957  C32 O5F 40 
O5F C33 C34 C 0 1 Y N N 18.090 -3.722 24.882 -3.453 0.152  2.487  C33 O5F 41 
O5F H1  H1  H 0 1 N N N 22.010 -2.984 34.131 9.832  0.471  2.715  H1  O5F 42 
O5F H2  H2  H 0 1 N N N 22.096 -1.161 32.487 8.790  -1.687 3.259  H2  O5F 43 
O5F H3  H3  H 0 1 N N N 20.830 -7.239 29.919 -0.942 -5.524 -0.163 H3  O5F 44 
O5F H4  H4  H 0 1 N N N 23.316 -1.430 30.398 6.691  -2.357 2.221  H4  O5F 45 
O5F H5  H5  H 0 1 N N N 26.344 -6.037 27.922 2.929  -1.212 -0.525 H5  O5F 46 
O5F H6  H6  H 0 1 N N N 23.096 -5.119 33.677 8.786  1.999  1.132  H6  O5F 47 
O5F H7  H7  H 0 1 N N N 24.443 -6.584 32.099 6.920  2.508  -0.422 H7  O5F 48 
O5F H8  H8  H 0 1 N N N 25.691 -6.828 30.030 4.821  1.837  -1.459 H8  O5F 49 
O5F H9  H9  H 0 1 N N N 25.818 -3.469 26.625 2.932  1.629  -1.201 H9  O5F 50 
O5F H10 H10 H 0 1 N N N 28.068 -4.770 29.167 4.347  -1.837 -2.461 H10 O5F 51 
O5F H11 H11 H 0 1 N N N 28.179 -4.514 27.392 2.759  -1.241 -2.999 H11 O5F 52 
O5F H12 H12 H 0 1 N N N 27.458 -3.245 28.439 4.189  -0.188 -3.109 H12 O5F 53 
O5F H13 H13 H 0 1 N N N 24.775 -2.834 28.918 4.828  -1.851 0.664  H13 O5F 54 
O5F H14 H14 H 0 1 N N N 25.920 -3.648 24.459 1.684  2.885  -2.580 H14 O5F 55 
O5F H15 H15 H 0 1 N N N 25.136 -2.684 22.340 0.226  4.855  -2.721 H15 O5F 56 
O5F H16 H16 H 0 1 N N N 22.758 -2.854 21.690 -1.945 4.886  -1.585 H16 O5F 57 
O5F H17 H17 H 0 1 N N N 20.278 -5.740 26.857 -0.021 -0.517 0.384  H17 O5F 58 
O5F H18 H18 H 0 1 N N N 22.026 -6.150 26.886 -1.408 -0.699 1.485  H18 O5F 59 
O5F H19 H19 H 0 1 N N N 22.565 -3.922 27.738 -2.808 -1.479 -0.406 H19 O5F 60 
O5F H20 H20 H 0 1 N N N 20.837 -3.441 27.633 -1.421 -1.298 -1.508 H20 O5F 61 
O5F H21 H21 H 0 1 N N N 22.075 -5.586 29.423 -0.144 -2.950 -0.171 H21 O5F 62 
O5F H22 H22 H 0 1 N N N 21.308 -4.042 29.929 -1.530 -3.132 0.930  H22 O5F 63 
O5F H23 H23 H 0 1 N N N 19.015 -8.663 30.005 -3.216 -6.196 -1.698 H23 O5F 64 
O5F H24 H24 H 0 1 N N N 18.027 -7.205 30.358 -1.829 -6.014 -2.799 H24 O5F 65 
O5F H25 H25 H 0 1 N N N 18.330 -7.694 28.657 -1.779 -7.228 -1.498 H25 O5F 66 
O5F H26 H26 H 0 1 N N N 20.334 -7.215 24.872 -4.959 1.917  -0.909 H26 O5F 67 
O5F H27 H27 H 0 1 N N N 19.336 -9.397 25.267 -7.341 1.887  -1.444 H27 O5F 68 
O5F H28 H28 H 0 1 N N N 16.912 -9.624 25.624 -8.952 0.787  0.049  H28 O5F 69 
O5F H29 H29 H 0 1 N N N 15.471 -7.660 25.627 -8.214 -0.303 2.101  H29 O5F 70 
O5F H30 H30 H 0 1 N N N 15.224 -5.174 25.428 -6.342 -0.926 3.626  H30 O5F 71 
O5F H31 H31 H 0 1 N N N 18.488 -2.727 24.748 -2.418 0.121  2.793  H31 O5F 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O5F C16 C15 DOUB Y N 1  
O5F C16 C17 SING Y N 2  
O5F C15 C14 SING Y N 3  
O5F N4  C17 SING Y N 4  
O5F N4  C24 DOUB Y N 5  
O5F C17 C18 DOUB Y N 6  
O5F C14 C13 DOUB Y N 7  
O5F C24 C25 SING N N 8  
O5F C24 N1  SING Y N 9  
O5F C18 C13 SING Y N 10 
O5F C18 N1  SING Y N 11 
O5F C25 C33 DOUB Y N 12 
O5F C25 C26 SING Y N 13 
O5F C33 N3  SING Y N 14 
O5F C26 C27 DOUB Y N 15 
O5F C26 C31 SING Y N 16 
O5F C27 C28 SING Y N 17 
O5F C13 C12 SING N N 18 
O5F N3  C32 DOUB Y N 19 
O5F C31 C32 SING Y N 20 
O5F C31 C30 DOUB Y N 21 
O5F C28 C29 DOUB Y N 22 
O5F N1  C19 SING N N 23 
O5F C30 C29 SING Y N 24 
O5F C12 O1  DOUB N N 25 
O5F C12 N   SING N N 26 
O5F C19 C20 SING N N 27 
O5F N   C1  SING N N 28 
O5F C20 C21 SING N N 29 
O5F C1  C   SING N N 30 
O5F C1  C2  SING N N 31 
O5F O   C22 DOUB N N 32 
O5F C21 C22 SING N N 33 
O5F C22 N2  SING N N 34 
O5F C2  C11 DOUB Y N 35 
O5F C2  C3  SING Y N 36 
O5F C11 C10 SING Y N 37 
O5F N2  C23 SING N N 38 
O5F C3  C4  DOUB Y N 39 
O5F C10 C9  DOUB Y N 40 
O5F C10 C5  SING Y N 41 
O5F C9  C8  SING Y N 42 
O5F C4  C5  SING Y N 43 
O5F C5  C6  DOUB Y N 44 
O5F C8  C7  DOUB Y N 45 
O5F C6  C7  SING Y N 46 
O5F C7  H1  SING N N 47 
O5F C8  H2  SING N N 48 
O5F N2  H3  SING N N 49 
O5F C9  H4  SING N N 50 
O5F C1  H5  SING N N 51 
O5F C6  H6  SING N N 52 
O5F C4  H7  SING N N 53 
O5F C3  H8  SING N N 54 
O5F N   H9  SING N N 55 
O5F C   H10 SING N N 56 
O5F C   H11 SING N N 57 
O5F C   H12 SING N N 58 
O5F C11 H13 SING N N 59 
O5F C14 H14 SING N N 60 
O5F C15 H15 SING N N 61 
O5F C16 H16 SING N N 62 
O5F C19 H17 SING N N 63 
O5F C19 H18 SING N N 64 
O5F C20 H19 SING N N 65 
O5F C20 H20 SING N N 66 
O5F C21 H21 SING N N 67 
O5F C21 H22 SING N N 68 
O5F C23 H23 SING N N 69 
O5F C23 H24 SING N N 70 
O5F C23 H25 SING N N 71 
O5F C27 H26 SING N N 72 
O5F C28 H27 SING N N 73 
O5F C29 H28 SING N N 74 
O5F C30 H29 SING N N 75 
O5F C32 H30 SING N N 76 
O5F C33 H31 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O5F SMILES           ACDLabs              12.01 "CC(NC(=O)c1cccc2nc(c3cncc4ccccc43)n(CCCC(=O)NC)c12)c1cc2ccccc2cc1"                                                                                                                                                             
O5F InChI            InChI                1.03  "InChI=1S/C34H31N5O2/c1-22(24-17-16-23-9-3-4-10-25(23)19-24)37-34(41)28-13-7-14-30-32(28)39(18-8-15-31(40)35-2)33(38-30)29-21-36-20-26-11-5-6-12-27(26)29/h3-7,9-14,16-17,19-22H,8,15,18H2,1-2H3,(H,35,40)(H,37,41)/t22-/m0/s1" 
O5F InChIKey         InChI                1.03  CTPLSMAVLSTZPJ-QFIPXVFZSA-N                                                                                                                                                                                                     
O5F SMILES_CANONICAL CACTVS               3.385 "CNC(=O)CCCn1c(nc2cccc(C(=O)N[C@@H](C)c3ccc4ccccc4c3)c12)c5cncc6ccccc56"                                                                                                                                                        
O5F SMILES           CACTVS               3.385 "CNC(=O)CCCn1c(nc2cccc(C(=O)N[CH](C)c3ccc4ccccc4c3)c12)c5cncc6ccccc56"                                                                                                                                                          
O5F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1ccc2ccccc2c1)NC(=O)c3cccc4c3n(c(n4)c5cncc6c5cccc6)CCCC(=O)NC"                                                                                                                                                        
O5F SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1ccc2ccccc2c1)NC(=O)c3cccc4c3n(c(n4)c5cncc6c5cccc6)CCCC(=O)NC"                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
O5F "SYSTEMATIC NAME" ACDLabs              12.01 "(2P)-2-(isoquinolin-4-yl)-1-[4-(methylamino)-4-oxobutyl]-N-[(1S)-1-(naphthalen-2-yl)ethyl]-1H-benzimidazole-7-carboxamide"     
O5F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-isoquinolin-4-yl-3-[4-(methylamino)-4-oxidanylidene-butyl]-~{N}-[(1~{S})-1-naphthalen-2-ylethyl]benzimidazole-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O5F "Create component" 2022-04-22 RCSB 
O5F "Initial release"  2023-07-26 RCSB 
# 
