data_LHF
# 
_chem_comp.id                                    LHF 
_chem_comp.name                                  "5-[[2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethylamino]methyl]-4-azanyl-1-[2-(4-bromanylphenoxy)ethyl]pyrimidin-2-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H28 Br N9 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-09-13 
_chem_comp.pdbx_modified_date                    2017-09-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        602.440 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LHF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LV3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LHF "C1'"  C1  C  0 1 N N R 24.720 23.637 117.553 4.732  1.109  -0.613 "C1'"  LHF 1  
LHF C2     C2  C  0 1 Y N N 22.834 26.302 114.643 8.597  -0.883 0.502  C2     LHF 2  
LHF "C2'"  C3  C  0 1 N N R 26.151 23.481 118.069 4.444  0.428  -1.975 "C2'"  LHF 3  
LHF "C3'"  C4  C  0 1 N N S 26.137 22.001 118.445 3.508  1.454  -2.659 "C3'"  LHF 4  
LHF C32    C5  C  0 1 N N N 23.523 21.002 123.944 -1.185 3.904  0.644  C32    LHF 5  
LHF C36    C6  C  0 1 N N N 26.150 18.479 126.258 -5.384 3.598  0.567  C36    LHF 6  
LHF C38    C7  C  0 1 N N N 25.328 20.639 125.648 -3.319 2.931  1.466  C38    LHF 7  
LHF C39    C8  C  0 1 N N N 24.461 20.124 124.755 -2.687 3.785  0.626  C39    LHF 8  
LHF C4     C9  C  0 1 Y N N 23.617 25.719 116.620 6.352  -0.403 0.611  C4     LHF 9  
LHF "C4'"  C10 C  0 1 N N R 24.770 21.871 119.097 2.941  2.285  -1.492 "C4'"  LHF 10 
LHF C40    C11 C  0 1 N N N 24.487 18.694 124.618 -3.455 4.553  -0.272 C40    LHF 11 
LHF C47    C12 C  0 1 N N N 27.212 20.511 127.229 -5.374 1.924  2.332  C47    LHF 12 
LHF C5     C13 C  0 1 Y N N 23.214 26.922 117.190 6.219  -1.317 1.670  C5     LHF 13 
LHF "C5'"  C14 C  0 1 N N N 24.742 22.258 120.560 1.414  2.191  -1.479 "C5'"  LHF 14 
LHF C50    C15 C  0 1 N N N 27.785 21.766 126.605 -5.523 0.560  1.656  C50    LHF 15 
LHF C54    C16 C  0 1 Y N N 31.069 25.316 125.560 -4.090 -3.723 -0.350 C54    LHF 16 
LHF C55    C17 C  0 1 Y N N 29.760 25.087 125.199 -2.918 -3.095 0.029  C55    LHF 17 
LHF C56    C18 C  0 1 Y N N 29.127 23.944 125.649 -2.962 -1.853 0.633  C56    LHF 18 
LHF C57    C19 C  0 1 Y N N 29.813 23.042 126.452 -4.184 -1.237 0.859  C57    LHF 19 
LHF C58    C20 C  0 1 Y N N 31.138 23.275 126.783 -5.359 -1.869 0.479  C58    LHF 20 
LHF C59    C21 C  0 1 Y N N 31.771 24.417 126.332 -5.310 -3.111 -0.124 C59    LHF 21 
LHF C6     C22 C  0 1 Y N N 22.586 27.850 116.341 7.367  -2.001 2.104  C6     LHF 22 
LHF C65    C23 C  0 1 N N N 24.117 21.226 121.478 0.855  3.117  -0.397 C65    LHF 23 
LHF C8     C24 C  0 1 Y N N 24.071 25.773 118.762 4.256  -0.475 1.293  C8     LHF 24 
LHF N1     N1  N  0 1 Y N N 22.399 27.499 115.051 8.521  -1.751 1.494  N1     LHF 25 
LHF N3     N2  N  0 1 Y N N 23.457 25.351 115.345 7.548  -0.220 0.062  N3     LHF 26 
LHF N31    N3  N  0 1 N N N 24.284 21.629 122.878 -0.611 3.026  -0.385 N31    LHF 27 
LHF N37    N4  N  0 1 N N N 26.190 19.869 126.383 -4.678 2.843  1.429  N37    LHF 28 
LHF N41    N5  N  0 1 N N N 25.288 17.927 125.363 -4.777 4.438  -0.269 N41    LHF 29 
LHF N43    N6  N  0 1 N N N 23.745 18.105 123.675 -2.838 5.422  -1.143 N43    LHF 30 
LHF N6     N7  N  0 1 N N N 22.199 29.070 116.727 7.298  -2.913 3.143  N6     LHF 31 
LHF N7     N8  N  0 1 Y N N 23.507 26.937 118.542 4.916  -1.313 2.040  N7     LHF 32 
LHF N9     N9  N  0 1 Y N N 24.170 24.991 117.640 5.098  0.111  0.396  N9     LHF 33 
LHF "O2'"  O1  O  0 1 N N N 27.117 23.784 117.071 5.648  0.257  -2.724 "O2'"  LHF 34 
LHF "O3'"  O2  O  0 1 N N N 26.284 21.150 117.316 4.248  2.287  -3.553 "O3'"  LHF 35 
LHF "O4'"  O3  O  0 1 N N N 23.922 22.773 118.346 3.474  1.734  -0.276 "O4'"  LHF 36 
LHF O42    O4  O  0 1 N N N 26.879 17.794 126.975 -6.601 3.506  0.547  O42    LHF 37 
LHF O53    O5  O  0 1 N N N 29.168 21.934 126.950 -4.230 -0.015 1.454  O53    LHF 38 
LHF BR1    BR1 BR 0 0 N N N 31.911 26.931 125.021 -4.026 -5.419 -1.184 BR1    LHF 39 
LHF "H1'"  H1  H  0 1 N N N 24.695 23.306 116.504 5.519  1.856  -0.716 "H1'"  LHF 40 
LHF H2     H2  H  0 1 N N N 22.657 26.072 113.603 9.556  -0.707 0.037  H2     LHF 41 
LHF "H2'"  H3  H  0 1 N N N 26.294 24.096 118.970 3.937  -0.527 -1.833 "H2'"  LHF 42 
LHF "H3'"  H4  H  0 1 N N N 26.921 21.805 119.191 2.704  0.943  -3.189 "H3'"  LHF 43 
LHF H34    H5  H  0 1 N N N 23.086 21.776 124.592 -0.900 4.936  0.442  H34    LHF 44 
LHF H35    H6  H  0 1 N N N 22.719 20.387 123.514 -0.808 3.609  1.624  H35    LHF 45 
LHF H46    H7  H  0 1 N N N 25.344 21.709 125.791 -2.752 2.325  2.157  H46    LHF 46 
LHF "H4'"  H8  H  0 1 N N N 24.414 20.836 118.988 3.247  3.326  -1.595 "H4'"  LHF 47 
LHF H48    H9  H  0 1 N N N 26.754 20.775 128.194 -6.361 2.323  2.566  H48    LHF 48 
LHF H49    H10 H  0 1 N N N 28.031 19.796 127.395 -4.799 1.813  3.251  H49    LHF 49 
LHF "H5'2" H11 H  0 0 N N N 25.778 22.427 120.889 1.024  2.492  -2.452 "H5'2" LHF 50 
LHF "H5'1" H12 H  0 0 N N N 24.170 23.193 120.656 1.115  1.164  -1.269 "H5'1" LHF 51 
LHF H52    H13 H  0 1 N N N 27.217 22.637 126.965 -6.118 -0.097 2.290  H52    LHF 52 
LHF H51    H14 H  0 1 N N N 27.694 21.696 125.511 -6.020 0.683  0.694  H51    LHF 53 
LHF H61    H15 H  0 1 N N N 29.235 25.792 124.572 -1.967 -3.575 -0.148 H61    LHF 54 
LHF H62    H16 H  0 1 N N N 28.100 23.752 125.377 -2.047 -1.363 0.929  H62    LHF 55 
LHF H63    H17 H  0 1 N N N 31.676 22.564 127.393 -6.311 -1.391 0.655  H63    LHF 56 
LHF H64    H18 H  0 1 N N N 32.805 24.603 126.582 -6.224 -3.603 -0.421 H64    LHF 57 
LHF H67    H19 H  0 1 N N N 23.044 21.139 121.250 1.245  2.816  0.575  H67    LHF 58 
LHF H66    H20 H  0 1 N N N 24.606 20.254 121.319 1.154  4.144  -0.607 H66    LHF 59 
LHF H8     H21 H  0 1 N N N 24.424 25.461 119.734 3.198  -0.275 1.373  H8     LHF 60 
LHF H33    H22 H  0 1 N N N 25.249 21.487 123.099 -0.994 3.238  -1.295 H33    LHF 61 
LHF H44    H24 H  0 1 N N N 23.799 17.115 123.542 -1.872 5.506  -1.140 H44    LHF 62 
LHF H45    H25 H  0 1 N N N 23.136 18.654 123.102 -3.370 5.949  -1.760 H45    LHF 63 
LHF HN62   H26 H  0 0 N N N 21.808 29.558 115.947 6.450  -3.086 3.580  HN62   LHF 64 
LHF HN61   H27 H  0 0 N N N 21.511 28.989 117.448 8.098  -3.378 3.433  HN61   LHF 65 
LHF "HO2'" H28 H  0 0 N N N 27.989 23.675 117.431 5.520  -0.165 -3.585 "HO2'" LHF 66 
LHF H3     H29 H  0 1 N N N 26.269 20.243 117.598 4.676  1.807  -4.275 H3     LHF 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LHF C2    N1     DOUB Y N 1  
LHF C2    N3     SING Y N 2  
LHF N1    C6     SING Y N 3  
LHF N3    C4     DOUB Y N 4  
LHF C6    N6     SING N N 5  
LHF C6    C5     DOUB Y N 6  
LHF C4    C5     SING Y N 7  
LHF C4    N9     SING Y N 8  
LHF "O2'" "C2'"  SING N N 9  
LHF C5    N7     SING Y N 10 
LHF "O3'" "C3'"  SING N N 11 
LHF "C1'" N9     SING N N 12 
LHF "C1'" "C2'"  SING N N 13 
LHF "C1'" "O4'"  SING N N 14 
LHF N9    C8     SING Y N 15 
LHF "C2'" "C3'"  SING N N 16 
LHF "O4'" "C4'"  SING N N 17 
LHF "C3'" "C4'"  SING N N 18 
LHF N7    C8     DOUB Y N 19 
LHF "C4'" "C5'"  SING N N 20 
LHF "C5'" C65    SING N N 21 
LHF C65   N31    SING N N 22 
LHF N31   C32    SING N N 23 
LHF N43   C40    SING N N 24 
LHF C32   C39    SING N N 25 
LHF C40   C39    SING N N 26 
LHF C40   N41    DOUB N N 27 
LHF C39   C38    DOUB N N 28 
LHF BR1   C54    SING N N 29 
LHF C55   C54    DOUB Y N 30 
LHF C55   C56    SING Y N 31 
LHF N41   C36    SING N N 32 
LHF C54   C59    SING Y N 33 
LHF C38   N37    SING N N 34 
LHF C56   C57    DOUB Y N 35 
LHF C36   N37    SING N N 36 
LHF C36   O42    DOUB N N 37 
LHF C59   C58    DOUB Y N 38 
LHF N37   C47    SING N N 39 
LHF C57   C58    SING Y N 40 
LHF C57   O53    SING N N 41 
LHF C50   O53    SING N N 42 
LHF C50   C47    SING N N 43 
LHF "C1'" "H1'"  SING N N 44 
LHF C2    H2     SING N N 45 
LHF "C2'" "H2'"  SING N N 46 
LHF "C3'" "H3'"  SING N N 47 
LHF C32   H34    SING N N 48 
LHF C32   H35    SING N N 49 
LHF C38   H46    SING N N 50 
LHF "C4'" "H4'"  SING N N 51 
LHF C47   H48    SING N N 52 
LHF C47   H49    SING N N 53 
LHF "C5'" "H5'2" SING N N 54 
LHF "C5'" "H5'1" SING N N 55 
LHF C50   H52    SING N N 56 
LHF C50   H51    SING N N 57 
LHF C55   H61    SING N N 58 
LHF C56   H62    SING N N 59 
LHF C58   H63    SING N N 60 
LHF C59   H64    SING N N 61 
LHF C65   H67    SING N N 62 
LHF C65   H66    SING N N 63 
LHF C8    H8     SING N N 64 
LHF N31   H33    SING N N 65 
LHF N43   H44    SING N N 66 
LHF N43   H45    SING N N 67 
LHF N6    HN62   SING N N 68 
LHF N6    HN61   SING N N 69 
LHF "O2'" "HO2'" SING N N 70 
LHF "O3'" H3     SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LHF InChI            InChI                1.03  
"InChI=1S/C24H28BrN9O5/c25-14-1-3-15(4-2-14)38-8-7-33-10-13(20(26)32-24(33)37)9-28-6-5-16-18(35)19(36)23(39-16)34-12-31-17-21(27)29-11-30-22(17)34/h1-4,10-12,16,18-19,23,28,35-36H,5-9H2,(H2,26,32,37)(H2,27,29,30)/t16-,18-,19-,23-/m1/s1" 
LHF InChIKey         InChI                1.03  AFEXDGZCVHONJJ-DYVMYPEFSA-N 
LHF SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)N(CCOc2ccc(Br)cc2)C=C1CNCC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45" 
LHF SMILES           CACTVS               3.385 "NC1=NC(=O)N(CCOc2ccc(Br)cc2)C=C1CNCC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45" 
LHF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1cc(ccc1OCCN2C=C(C(=NC2=O)N)CNCC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)Br" 
LHF SMILES           "OpenEye OEToolkits" 2.0.5 "c1cc(ccc1OCCN2C=C(C(=NC2=O)N)CNCCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)Br" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LHF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "5-[[2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]ethylamino]methyl]-4-azanyl-1-[2-(4-bromanylphenoxy)ethyl]pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LHF "Create component" 2016-09-13 EBI  
LHF "Initial release"  2017-09-20 RCSB 
# 
