data_K0F
# 
_chem_comp.id                                    K0F 
_chem_comp.name                                  "16,17-dimethoxy-21-(4-pyridin-4-ylbutyl)-5,7-dioxa-13$l^{4}-azapentacyclo[11.8.0.0^{2,10}.0^{4,8}.0^{15,20}]henicosa-1(21),2(10),3,8,13,15,17,19-octaene" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H29 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Berberine 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2022-05-16 
_chem_comp.pdbx_modified_date                    2022-12-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        469.552 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     K0F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZUR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
K0F C4  C1  C 0 1 N N N 0.764  -18.725 5.070 3.023  -2.445 -1.179 C4  K0F 1  
K0F C2  C2  C 0 1 N N N -0.010 -21.143 5.543 1.007  -1.169 -0.436 C2  K0F 2  
K0F N1  N1  N 1 1 Y N N -2.062 -25.597 4.978 -2.323 1.788  -0.659 N1  K0F 3  
K0F C6  C3  C 0 1 Y N N 1.556  -16.327 5.167 4.477  -4.255 -0.209 C6  K0F 4  
K0F C5  C4  C 0 1 Y N N 2.578  -15.407 5.322 5.724  -4.716 0.170  C5  K0F 5  
K0F C8  C5  C 0 1 Y N N 3.193  -18.043 5.279 5.513  -2.222 -0.895 C8  K0F 6  
K0F C1  C6  C 0 1 N N N 0.241  -22.620 5.195 0.354  -0.440 0.739  C1  K0F 7  
K0F C3  C7  C 0 1 N N N 1.187  -20.202 5.338 2.369  -1.716 -0.003 C3  K0F 8  
K0F N2  N2  N 0 1 Y N N 3.868  -15.744 5.471 6.796  -3.963 0.020  N2  K0F 9  
K0F C7  C8  C 0 1 Y N N 1.859  -17.679 5.154 4.364  -2.984 -0.752 C7  K0F 10 
K0F C9  C9  C 0 1 Y N N 4.152  -17.056 5.438 6.725  -2.750 -0.493 C9  K0F 11 
K0F O6  O1  O 0 1 N N N -6.182 -21.291 4.902 -5.446 -3.217 0.351  O6  K0F 12 
K0F O7  O2  O 0 1 N N N -5.780 -23.973 4.608 -5.642 -0.693 -0.697 O7  K0F 13 
K0F O8  O3  O 0 1 N N N 3.897  -24.760 5.533 2.906  3.502  1.890  O8  K0F 14 
K0F O9  O4  O 0 1 N N N 4.067  -27.064 5.568 3.079  5.009  0.272  O9  K0F 15 
K0F C16 C10 C 0 1 N N N -6.368 -19.873 5.007 -5.276 -4.518 0.916  C16 K0F 16 
K0F C17 C11 C 0 1 N N N -6.955 -23.326 4.126 -6.548 -0.040 0.195  C17 K0F 17 
K0F C18 C12 C 0 1 Y N N -4.904 -21.764 5.000 -4.361 -2.396 0.355  C18 K0F 18 
K0F C19 C13 C 0 1 Y N N -3.802 -20.952 5.184 -3.157 -2.843 0.896  C19 K0F 19 
K0F C20 C14 C 0 1 Y N N -4.736 -23.117 4.823 -4.464 -1.123 -0.174 C20 K0F 20 
K0F C21 C15 C 0 1 Y N N -2.543 -21.470 5.166 -2.049 -2.046 0.910  C21 K0F 21 
K0F C22 C16 C 0 1 Y N N -2.323 -22.849 4.974 -2.109 -0.755 0.367  C22 K0F 22 
K0F C23 C17 C 0 1 Y N N -3.452 -23.685 4.817 -3.337 -0.283 -0.168 C23 K0F 23 
K0F C24 C18 C 0 1 Y N N -3.264 -25.064 4.803 -3.386 1.019  -0.684 C24 K0F 24 
K0F C25 C19 C 0 1 Y N N -0.947 -24.827 5.030 -1.159 1.405  -0.112 C25 K0F 25 
K0F C26 C20 C 0 1 Y N N -1.023 -23.446 5.047 -0.988 0.100  0.313  C26 K0F 26 
K0F C27 C21 C 0 1 N N N -1.988 -26.999 5.462 -2.427 3.104  -1.308 C27 K0F 27 
K0F C28 C22 C 0 1 N N N -0.820 -27.708 4.825 -1.114 3.526  -1.974 C28 K0F 28 
K0F C29 C23 C 0 1 Y N N 0.432  -26.880 4.963 -0.015 3.441  -0.940 C29 K0F 29 
K0F C30 C24 C 0 1 Y N N 0.321  -25.487 5.000 -0.070 2.409  0.000  C30 K0F 30 
K0F C31 C25 C 0 1 Y N N 1.464  -24.707 5.132 0.830  2.402  1.071  C31 K0F 31 
K0F C32 C26 C 0 1 Y N N 1.680  -27.480 5.081 1.006  4.374  -0.960 C32 K0F 32 
K0F C33 C27 C 0 1 Y N N 2.766  -26.686 5.330 1.970  4.284  0.033  C33 K0F 33 
K0F C34 C28 C 0 1 Y N N 2.660  -25.328 5.348 1.869  3.317  1.049  C34 K0F 34 
K0F C35 C29 C 0 1 N N N 4.754  -25.850 5.869 3.429  4.817  1.651  C35 K0F 35 
K0F H7  H1  H 0 1 N N N 0.336  -18.679 4.058 2.384  -3.269 -1.496 H7  K0F 36 
K0F H8  H2  H 0 1 N N N -0.008 -18.460 5.807 3.157  -1.750 -2.008 H8  K0F 37 
K0F H3  H3  H 0 1 N N N -0.836 -20.782 4.913 0.368  -1.993 -0.753 H3  K0F 38 
K0F H4  H4  H 0 1 N N N -0.305 -21.090 6.601 1.142  -0.474 -1.265 H4  K0F 39 
K0F H10 H5  H 0 1 N N N 0.534  -15.995 5.057 3.604  -4.878 -0.088 H10 K0F 40 
K0F H9  H6  H 0 1 N N N 2.323  -14.358 5.323 5.821  -5.705 0.594  H9  K0F 41 
K0F H29 H7  H 0 1 N N N 3.480  -19.084 5.253 5.461  -1.228 -1.314 H29 K0F 42 
K0F H2  H8  H 0 1 N N N 0.794  -22.662 4.245 0.219  -1.135 1.568  H2  K0F 43 
K0F H1  H9  H 0 1 N N N 0.852  -23.064 5.995 0.993  0.384  1.057  H1  K0F 44 
K0F H6  H10 H 0 1 N N N 1.771  -20.561 4.478 2.234  -2.411 0.826  H6  K0F 45 
K0F H5  H11 H 0 1 N N N 1.812  -20.229 6.243 3.008  -0.892 0.314  H5  K0F 46 
K0F H30 H12 H 0 1 N N N 5.184  -17.358 5.541 7.625  -2.163 -0.600 H30 K0F 47 
K0F H12 H13 H 0 1 N N N -7.438 -19.635 4.911 -4.501 -5.054 0.368  H12 K0F 48 
K0F H11 H14 H 0 1 N N N -6.002 -19.527 5.985 -4.983 -4.425 1.962  H11 K0F 49 
K0F H13 H15 H 0 1 N N N -5.807 -19.369 4.206 -6.215 -5.069 0.849  H13 K0F 50 
K0F H15 H16 H 0 1 N N N -7.750 -24.072 3.976 -6.817 -0.721 1.003  H15 K0F 51 
K0F H14 H17 H 0 1 N N N -7.288 -22.577 4.860 -6.071 0.847  0.612  H14 K0F 52 
K0F H16 H18 H 0 1 N N N -6.734 -22.829 3.170 -7.446 0.252  -0.348 H16 K0F 53 
K0F H17 H19 H 0 1 N N N -3.941 -19.893 5.344 -3.097 -3.839 1.311  H17 K0F 54 
K0F H18 H20 H 0 1 N N N -1.697 -20.812 5.301 -1.144 -2.431 1.354  H18 K0F 55 
K0F H19 H21 H 0 1 N N N -4.113 -25.713 4.647 -4.307 1.395  -1.104 H19 K0F 56 
K0F H21 H22 H 0 1 N N N -1.862 -27.000 6.555 -3.207 3.064  -2.064 H21 K0F 57 
K0F H22 H23 H 0 1 N N N -2.919 -27.524 5.200 -2.691 3.846  -0.557 H22 K0F 58 
K0F H23 H24 H 0 1 N N N -0.670 -28.678 5.321 -0.892 2.853  -2.799 H23 K0F 59 
K0F H24 H25 H 0 1 N N N -1.032 -27.870 3.758 -1.200 4.547  -2.335 H24 K0F 60 
K0F H25 H26 H 0 1 N N N 1.407  -23.631 5.065 0.708  1.754  1.928  H25 K0F 61 
K0F H26 H27 H 0 1 N N N 1.790  -28.549 4.978 1.054  5.144  -1.717 H26 K0F 62 
K0F H27 H28 H 0 1 N N N 5.681  -25.790 5.280 2.941  5.555  2.287  H27 K0F 63 
K0F H28 H29 H 0 1 N N N 4.998  -25.816 6.941 4.510  4.840  1.787  H28 K0F 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
K0F C4  C3  SING N N 1  
K0F C4  C7  SING N N 2  
K0F C2  C1  SING N N 3  
K0F C2  C3  SING N N 4  
K0F N1  C24 DOUB Y N 5  
K0F N1  C25 SING Y N 6  
K0F N1  C27 SING N N 7  
K0F C6  C5  DOUB Y N 8  
K0F C6  C7  SING Y N 9  
K0F C5  N2  SING Y N 10 
K0F C8  C7  DOUB Y N 11 
K0F C8  C9  SING Y N 12 
K0F C1  C26 SING N N 13 
K0F N2  C9  DOUB Y N 14 
K0F O6  C16 SING N N 15 
K0F O6  C18 SING N N 16 
K0F O7  C17 SING N N 17 
K0F O7  C20 SING N N 18 
K0F O8  C34 SING N N 19 
K0F O8  C35 SING N N 20 
K0F O9  C33 SING N N 21 
K0F O9  C35 SING N N 22 
K0F C18 C19 DOUB Y N 23 
K0F C18 C20 SING Y N 24 
K0F C19 C21 SING Y N 25 
K0F C20 C23 DOUB Y N 26 
K0F C21 C22 DOUB Y N 27 
K0F C22 C23 SING Y N 28 
K0F C22 C26 SING Y N 29 
K0F C23 C24 SING Y N 30 
K0F C25 C26 DOUB Y N 31 
K0F C25 C30 SING N N 32 
K0F C27 C28 SING N N 33 
K0F C28 C29 SING N N 34 
K0F C29 C30 DOUB Y N 35 
K0F C29 C32 SING Y N 36 
K0F C30 C31 SING Y N 37 
K0F C31 C34 DOUB Y N 38 
K0F C32 C33 DOUB Y N 39 
K0F C33 C34 SING Y N 40 
K0F C4  H7  SING N N 41 
K0F C4  H8  SING N N 42 
K0F C2  H3  SING N N 43 
K0F C2  H4  SING N N 44 
K0F C6  H10 SING N N 45 
K0F C5  H9  SING N N 46 
K0F C8  H29 SING N N 47 
K0F C1  H2  SING N N 48 
K0F C1  H1  SING N N 49 
K0F C3  H6  SING N N 50 
K0F C3  H5  SING N N 51 
K0F C9  H30 SING N N 52 
K0F C16 H12 SING N N 53 
K0F C16 H11 SING N N 54 
K0F C16 H13 SING N N 55 
K0F C17 H15 SING N N 56 
K0F C17 H14 SING N N 57 
K0F C17 H16 SING N N 58 
K0F C19 H17 SING N N 59 
K0F C21 H18 SING N N 60 
K0F C24 H19 SING N N 61 
K0F C27 H21 SING N N 62 
K0F C27 H22 SING N N 63 
K0F C28 H23 SING N N 64 
K0F C28 H24 SING N N 65 
K0F C31 H25 SING N N 66 
K0F C32 H26 SING N N 67 
K0F C35 H27 SING N N 68 
K0F C35 H28 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
K0F InChI            InChI                1.06  "InChI=1S/C29H29N2O4/c1-32-25-8-7-21-22(6-4-3-5-19-9-12-30-13-10-19)28-23-16-27-26(34-18-35-27)15-20(23)11-14-31(28)17-24(21)29(25)33-2/h7-10,12-13,15-17H,3-6,11,14,18H2,1-2H3/q+1" 
K0F InChIKey         InChI                1.06  YAGGXYGFEKMOOG-UHFFFAOYSA-N                                                                                                                                                          
K0F SMILES_CANONICAL CACTVS               3.385 "COc1ccc2c(CCCCc3ccncc3)c4c5cc6OCOc6cc5CC[n+]4cc2c1OC"                                                                                                                               
K0F SMILES           CACTVS               3.385 "COc1ccc2c(CCCCc3ccncc3)c4c5cc6OCOc6cc5CC[n+]4cc2c1OC"                                                                                                                               
K0F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1OC)c[n+]3c(c2CCCCc4ccncc4)-c5cc6c(cc5CC3)OCO6"                                                                                                                          
K0F SMILES           "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1OC)c[n+]3c(c2CCCCc4ccncc4)-c5cc6c(cc5CC3)OCO6"                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           K0F 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "16,17-dimethoxy-21-(4-pyridin-4-ylbutyl)-5,7-dioxa-13-azoniapentacyclo[11.8.0.0^{2,10}.0^{4,8}.0^{15,20}]henicosa-1(21),2(10),3,8,13,15,17,19-octaene" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      K0F 
_pdbx_chem_comp_synonyms.name         Berberine 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
K0F "Create component"  2022-05-16 PDBE 
K0F "Modify synonyms"   2022-06-17 PDBE 
K0F "Modify descriptor" 2022-08-22 RCSB 
K0F "Initial release"   2022-12-07 RCSB 
# 
