data_J3F
#

_chem_comp.id                                   J3F
_chem_comp.name                                 "(5S)-5-[[4-[2-[[7-(diethylamino)-2-oxidanylidene-chromen-4-yl]-methyl-amino]ethoxy]phenyl]methyl]-1,3-thiazolidine-2,4-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H29 N3 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-31
_chem_comp.pdbx_modified_date                   2021-05-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       495.591
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    J3F
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7EFQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J3F  N1   N1   N  0  1  N  N  N  19.688  19.247  20.016  -8.217   1.526  -0.049  N1   J3F   1  
J3F  N3   N2   N  0  1  N  N  N  17.558  25.023   7.714   6.641   1.969  -0.642  N3   J3F   2  
J3F  C4   C1   C  0  1  N  N  N  18.517  17.096  17.582  -5.696  -0.770   0.430  C4   J3F   3  
J3F  C5   C2   C  0  1  Y  N  N  18.284  16.950  16.120  -4.226  -0.938   0.145  C5   J3F   4  
J3F  C6   C3   C  0  1  Y  N  N  19.347  16.836  15.246  -3.304  -0.111   0.760  C6   J3F   5  
J3F  C7   C4   C  0  1  Y  N  N  19.146  16.794  13.883  -1.956  -0.264   0.500  C7   J3F   6  
J3F  C8   C5   C  0  1  Y  N  N  17.852  16.852  13.410  -1.527  -1.248  -0.379  C8   J3F   7  
J3F  C10  C6   C  0  1  Y  N  N  16.997  16.988  15.612  -3.800  -1.924  -0.727  C10  J3F   8  
J3F  C13  C7   C  0  1  N  N  N  18.655  18.950   8.954   2.574  -4.229  -0.135  C13  J3F   9  
J3F  C15  C8   C  0  1  N  N  N  14.940  19.574   9.662   2.025  -1.763   1.698  C15  J3F  10  
J3F  C17  C9   C  0  1  Y  N  N  15.651  22.144   8.889   4.002   0.127   1.123  C17  J3F  11  
J3F  C20  C10  C  0  1  Y  N  N  17.237  23.772   8.131   5.653   1.028  -0.367  C20  J3F  12  
J3F  C21  C11  C  0  1  Y  N  N  18.244  22.784   8.212   5.340   0.054  -1.316  C21  J3F  13  
J3F  C22  C12  C  0  1  Y  N  N  17.953  21.526   8.633   4.374  -0.874  -1.059  C22  J3F  14  
J3F  C24  C13  C  0  1  N  N  N  19.661  25.400   6.487   8.083   2.474   1.268  C24  J3F  15  
J3F  C26  C14  C  0  1  N  N  N  17.441  27.538   7.905   6.600   2.800  -2.942  C26  J3F  16  
J3F  C1   C15  C  0  1  N  N  N  20.596  19.722  19.107  -7.360   2.536   0.110  C1   J3F  17  
J3F  C2   C16  C  0  1  N  N  N  18.618  18.565  19.503  -7.798   0.317  -0.386  C2   J3F  18  
J3F  C3   C17  C  0  1  N  N  S  18.621  18.514  18.000  -6.299   0.219  -0.569  C3   J3F  19  
J3F  S1   S1   S  0  1  N  N  N  20.171  19.284  17.461  -5.731   1.917  -0.215  S1   J3F  20  
J3F  O1   O1   O  0  1  N  N  N  21.587  20.356  19.394  -7.645   3.677   0.421  O1   J3F  21  
J3F  O2   O2   O  0  1  N  N  N  17.767  18.017  20.150  -8.546  -0.625  -0.534  O2   J3F  22  
J3F  C9   C18  C  0  1  Y  N  N  16.775  16.929  14.258  -2.454  -2.076  -0.995  C9   J3F  23  
J3F  O3   O3   O  0  1  N  N  N  17.458  16.670  12.128  -0.201  -1.400  -0.637  O3   J3F  24  
J3F  C11  C19  C  0  1  N  N  N  18.126  17.310  11.071   0.168  -2.433  -1.552  C11  J3F  25  
J3F  C12  C20  C  0  1  N  N  N  17.016  17.535  10.083   1.689  -2.451  -1.715  C12  J3F  26  
J3F  N2   N3   N  0  1  N  N  N  17.295  18.824   9.471   2.312  -2.820  -0.442  N2   J3F  27  
J3F  C14  C21  C  0  1  N  N  N  16.280  19.854   9.385   2.652  -1.843   0.468  C14  J3F  28  
J3F  C16  C22  C  0  1  N  N  N  13.918  20.591   9.560   2.390  -0.754   2.595  C16  J3F  29  
J3F  O4   O4   O  0  1  N  N  N  14.328  21.856   9.166   3.343   0.145   2.302  O4   J3F  30  
J3F  C18  C23  C  0  1  Y  N  N  16.649  21.170   8.992   3.694  -0.850   0.162  C18  J3F  31  
J3F  O5   O5   O  0  1  N  N  N  12.719  20.433   9.742   1.827  -0.690   3.675  O5   J3F  32  
J3F  C19  C24  C  0  1  Y  N  N  15.928  23.417   8.465   4.986   1.064   0.849  C19  J3F  33  
J3F  C23  C25  C  0  1  N  N  N  18.182  25.219   6.405   6.973   2.994   0.351  C23  J3F  34  
J3F  C25  C26  C  0  1  N  N  N  17.313  26.191   8.572   7.348   1.936  -1.924  C25  J3F  35  
J3F  H1   H1   H  0  1  N  N  N  19.801  19.390  20.999  -9.164   1.679   0.089  H1   J3F  36  
J3F  H4   H2   H  0  1  N  N  N  17.679  16.630  18.121  -6.197  -1.733   0.336  H4   J3F  37  
J3F  H3   H3   H  0  1  N  N  N  19.453  16.581  17.843  -5.828  -0.390   1.443  H3   J3F  38  
J3F  H5   H4   H  0  1  N  N  N  20.352  16.779  15.637  -3.638   0.655   1.444  H5   J3F  39  
J3F  H6   H5   H  0  1  N  N  N  19.981  16.718  13.202  -1.236   0.383   0.980  H6   J3F  40  
J3F  H8   H6   H  0  1  N  N  N  16.158  17.065  16.288  -4.522  -2.571  -1.203  H8   J3F  41  
J3F  H13  H7   H  0  1  N  N  N  19.211  18.022   9.154   3.499  -4.311   0.436  H13  J3F  42  
J3F  H14  H8   H  0  1  N  N  N  18.620  19.130   7.869   1.748  -4.633   0.450  H14  J3F  43  
J3F  H15  H9   H  0  1  N  N  N  19.159  19.793   9.449   2.670  -4.791  -1.064  H15  J3F  44  
J3F  H16  H10  H  0  1  N  N  N  14.661  18.574   9.959   1.255  -2.473   1.962  H16  J3F  45  
J3F  H18  H11  H  0  1  N  N  N  19.258  23.032   7.936   5.865   0.036  -2.259  H18  J3F  46  
J3F  H19  H12  H  0  1  N  N  N  18.741  20.789   8.691   4.135  -1.626  -1.797  H19  J3F  47  
J3F  H22  H13  H  0  1  N  N  N  20.070  25.542   5.476   7.741   1.572   1.776  H22  J3F  48  
J3F  H23  H14  H  0  1  N  N  N  19.889  26.283   7.102   8.967   2.244   0.674  H23  J3F  49  
J3F  H24  H15  H  0  1  N  N  N  20.115  24.508   6.944   8.330   3.237   2.007  H24  J3F  50  
J3F  H27  H16  H  0  1  N  N  N  17.237  28.332   8.639   5.590   2.413  -3.074  H27  J3F  51  
J3F  H28  H17  H  0  1  N  N  N  18.461  27.656   7.511   6.552   3.827  -2.580  H28  J3F  52  
J3F  H29  H18  H  0  1  N  N  N  16.718  27.608   7.079   7.126   2.775  -3.896  H29  J3F  53  
J3F  H2   H19  H  0  1  N  N  N  17.798  19.114  17.585  -6.053  -0.069  -1.591  H2   J3F  54  
J3F  H7   H20  H  0  1  N  N  N  15.769  16.943  13.866  -2.122  -2.843  -1.679  H7   J3F  55  
J3F  H10  H21  H  0  1  N  N  N  18.912  16.667  10.648  -0.168  -3.396  -1.167  H10  J3F  56  
J3F  H9   H22  H  0  1  N  N  N  18.568  18.263  11.398  -0.299  -2.246  -2.519  H9   J3F  57  
J3F  H12  H23  H  0  1  N  N  N  16.043  17.556  10.596   1.964  -3.179  -2.479  H12  J3F  58  
J3F  H11  H24  H  0  1  N  N  N  17.012  16.741   9.322   2.034  -1.462  -2.015  H11  J3F  59  
J3F  H17  H25  H  0  1  N  N  N  15.135  24.146   8.389   5.233   1.820   1.580  H17  J3F  60  
J3F  H21  H26  H  0  1  N  N  N  17.744  26.114   5.938   7.314   3.895  -0.157  H21  J3F  61  
J3F  H20  H27  H  0  1  N  N  N  17.970  24.339   5.780   6.089   3.224   0.946  H20  J3F  62  
J3F  H25  H28  H  0  1  N  N  N  16.291  26.108   8.970   8.358   2.322  -1.792  H25  J3F  63  
J3F  H26  H29  H  0  1  N  N  N  18.034  26.156   9.402   7.396   0.908  -2.286  H26  J3F  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J3F  C23  C24  SING  N  N   1  
J3F  C23  N3   SING  N  N   2  
J3F  N3   C20  SING  N  N   3  
J3F  N3   C25  SING  N  N   4  
J3F  C26  C25  SING  N  N   5  
J3F  C20  C21  SING  Y  N   6  
J3F  C20  C19  DOUB  Y  N   7  
J3F  C21  C22  DOUB  Y  N   8  
J3F  C19  C17  SING  Y  N   9  
J3F  C22  C18  SING  Y  N  10  
J3F  C17  C18  DOUB  Y  N  11  
J3F  C17  O4   SING  N  N  12  
J3F  C13  N2   SING  N  N  13  
J3F  C18  C14  SING  N  N  14  
J3F  O4   C16  SING  N  N  15  
J3F  C14  N2   SING  N  N  16  
J3F  C14  C15  DOUB  N  N  17  
J3F  N2   C12  SING  N  N  18  
J3F  C16  C15  SING  N  N  19  
J3F  C16  O5   DOUB  N  N  20  
J3F  C12  C11  SING  N  N  21  
J3F  C11  O3   SING  N  N  22  
J3F  O3   C8   SING  N  N  23  
J3F  C8   C7   DOUB  Y  N  24  
J3F  C8   C9   SING  Y  N  25  
J3F  C7   C6   SING  Y  N  26  
J3F  C9   C10  DOUB  Y  N  27  
J3F  C6   C5   DOUB  Y  N  28  
J3F  C10  C5   SING  Y  N  29  
J3F  C5   C4   SING  N  N  30  
J3F  S1   C3   SING  N  N  31  
J3F  S1   C1   SING  N  N  32  
J3F  C4   C3   SING  N  N  33  
J3F  C3   C2   SING  N  N  34  
J3F  C1   O1   DOUB  N  N  35  
J3F  C1   N1   SING  N  N  36  
J3F  C2   N1   SING  N  N  37  
J3F  C2   O2   DOUB  N  N  38  
J3F  N1   H1   SING  N  N  39  
J3F  C4   H4   SING  N  N  40  
J3F  C4   H3   SING  N  N  41  
J3F  C6   H5   SING  N  N  42  
J3F  C7   H6   SING  N  N  43  
J3F  C10  H8   SING  N  N  44  
J3F  C13  H13  SING  N  N  45  
J3F  C13  H14  SING  N  N  46  
J3F  C13  H15  SING  N  N  47  
J3F  C15  H16  SING  N  N  48  
J3F  C21  H18  SING  N  N  49  
J3F  C22  H19  SING  N  N  50  
J3F  C24  H22  SING  N  N  51  
J3F  C24  H23  SING  N  N  52  
J3F  C24  H24  SING  N  N  53  
J3F  C26  H27  SING  N  N  54  
J3F  C26  H28  SING  N  N  55  
J3F  C26  H29  SING  N  N  56  
J3F  C3   H2   SING  N  N  57  
J3F  C9   H7   SING  N  N  58  
J3F  C11  H10  SING  N  N  59  
J3F  C11  H9   SING  N  N  60  
J3F  C12  H12  SING  N  N  61  
J3F  C12  H11  SING  N  N  62  
J3F  C19  H17  SING  N  N  63  
J3F  C23  H21  SING  N  N  64  
J3F  C23  H20  SING  N  N  65  
J3F  C25  H25  SING  N  N  66  
J3F  C25  H26  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J3F  InChI             InChI                 1.03   "InChI=1S/C26H29N3O5S/c1-4-29(5-2)18-8-11-20-21(16-24(30)34-22(20)15-18)28(3)12-13-33-19-9-6-17(7-10-19)14-23-25(31)27-26(32)35-23/h6-11,15-16,23H,4-5,12-14H2,1-3H3,(H,27,31,32)/t23-/m0/s1"  
J3F  InChIKey          InChI                 1.03   LTRSSWCLZRFXEC-QHCPKHFHSA-N  
J3F  SMILES_CANONICAL  CACTVS                3.385  "CCN(CC)c1ccc2c(OC(=O)C=C2N(C)CCOc3ccc(C[C@@H]4SC(=O)NC4=O)cc3)c1"  
J3F  SMILES            CACTVS                3.385  "CCN(CC)c1ccc2c(OC(=O)C=C2N(C)CCOc3ccc(C[CH]4SC(=O)NC4=O)cc3)c1"  
J3F  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCN(CC)c1ccc2c(c1)OC(=O)C=C2N(C)CCOc3ccc(cc3)C[C@H]4C(=O)NC(=O)S4"  
J3F  SMILES            "OpenEye OEToolkits"  2.0.7  "CCN(CC)c1ccc2c(c1)OC(=O)C=C2N(C)CCOc3ccc(cc3)CC4C(=O)NC(=O)S4"  
#
_pdbx_chem_comp_identifier.comp_id          J3F
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(5~{S})-5-[[4-[2-[[7-(diethylamino)-2-oxidanylidene-chromen-4-yl]-methyl-amino]ethoxy]phenyl]methyl]-1,3-thiazolidine-2,4-dione"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J3F  "Create component"  2021-03-31  PDBJ  
J3F  "Initial release"   2021-05-12  RCSB  
##
