data_H9F
#

_chem_comp.id                                   H9F
_chem_comp.name                                 "2-[[2-[bis(2-hydroxyethyl)amino]-4,8-di(piperidin-1-yl)pyrimido[5,4-d]pyrimidin-6-yl]-(2-hydroxyethyl)amino]ethanol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H40 N8 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-04
_chem_comp.pdbx_modified_date                   2021-12-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       504.626
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    H9F
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7DMC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H9F  N1   N1   N  0  1  Y  N  N  -1.510  -34.746  -24.534  -1.920   1.504   0.171  N1   H9F   1  
H9F  N3   N2   N  0  1  Y  N  N  -6.382  -34.523  -24.098   1.920  -1.504   0.171  N3   H9F   2  
H9F  C4   C1   C  0  1  Y  N  N  -4.096  -33.936  -24.268  -0.273  -0.651   0.171  C4   H9F   3  
H9F  C5   C2   C  0  1  Y  N  N  -5.448  -33.576  -24.120   0.619  -1.752   0.171  C5   H9F   4  
H9F  C6   C3   C  0  1  Y  N  N  -6.051  -35.803  -24.293   2.390  -0.260   0.171  C6   H9F   5  
H9F  C7   C4   C  0  1  N  N  N  -0.954  -31.347  -23.438  -4.310  -1.291   0.171  C7   H9F   6  
H9F  C8   C5   C  0  1  N  N  N  -1.536  -31.418  -22.044  -4.501  -1.765   1.614  C8   H9F   7  
H9F  C10  C6   C  0  1  N  N  N   1.419  -33.531  -24.674  -4.978   1.624  -1.270  C10  H9F   8  
H9F  C13  C7   C  0  1  N  N  N  -6.811  -38.135  -24.433   4.310   1.291   0.173  C13  H9F   9  
H9F  C15  C8   C  0  1  N  N  N  -0.694  -37.378  -25.059  -1.251   4.014   0.171  C15  H9F  10  
H9F  C17  C9   C  0  1  N  N  N  -1.102  -37.678  -27.572   0.262   5.721  -0.844  C17  H9F  11  
H9F  C20  C10  C  0  1  N  N  N  -5.086  -31.076  -24.047  -0.760  -3.277  -0.963  C20  H9F  12  
H9F  C21  C11  C  0  1  N  N  N  -5.169  -30.363  -25.387  -1.378  -4.673  -0.851  C21  H9F  13  
H9F  C22  C12  C  0  1  N  N  N  -6.308  -30.860  -26.257  -0.262  -5.721  -0.844  C22  H9F  14  
H9F  C24  C13  C  0  1  N  N  N  -7.322  -31.996  -24.237   1.251  -4.014   0.171  C24  H9F  15  
H9F  C1   C14  C  0  1  Y  N  N  -3.800  -35.305  -24.450   0.273   0.651   0.170  C1   H9F  16  
H9F  C2   C15  C  0  1  Y  N  N  -2.450  -35.682  -24.555  -0.619   1.752   0.171  C2   H9F  17  
H9F  C3   C16  C  0  1  Y  N  N  -1.851  -33.480  -24.293  -2.390   0.260   0.171  C3   H9F  18  
H9F  N2   N3   N  0  1  Y  N  N  -3.093  -33.020  -24.209  -1.602  -0.799   0.171  N2   H9F  19  
H9F  N4   N4   N  0  1  Y  N  N  -4.796  -36.245  -24.439   1.602   0.799   0.171  N4   H9F  20  
H9F  N5   N5   N  0  1  N  N  N  -0.854  -32.600  -24.209  -3.761   0.067   0.172  N5   H9F  21  
H9F  O1   O1   O  0  1  N  N  N  -0.667  -32.060  -21.139  -5.491  -0.957   2.253  O1   H9F  22  
H9F  C9   C17  C  0  1  N  N  N   0.286  -32.716  -25.114  -4.663   1.222   0.172  C9   H9F  23  
H9F  O2   O2   O  0  1  N  N  N   2.339  -33.521  -25.762  -5.708   0.575  -1.909  O2   H9F  24  
H9F  N6   N6   N  0  1  N  N  N  -7.039  -36.708  -24.191   3.761  -0.067   0.172  N6   H9F  25  
H9F  C11  C18  C  0  1  N  N  N  -8.333  -36.346  -23.586   4.663  -1.222   0.171  C11  H9F  26  
H9F  C12  C19  C  0  1  N  N  N  -8.336  -36.141  -22.072   4.977  -1.623  -1.271  C12  H9F  27  
H9F  O3   O3   O  0  1  N  N  N  -7.502  -35.072  -21.655   5.707  -0.573  -1.909  O3   H9F  28  
H9F  C14  C20  C  0  1  N  N  N  -6.748  -38.924  -23.160   4.501   1.763   1.616  C14  H9F  29  
H9F  O4   O4   O  0  1  N  N  N  -5.601  -39.750  -23.132   5.491   0.955   2.254  O4   H9F  30  
H9F  N7   N7   N  0  1  N  N  N  -2.079  -36.925  -24.941  -0.145   3.048   0.171  N7   H9F  31  
H9F  N8   N8   N  0  1  N  N  N  -5.891  -32.301  -24.054   0.144  -3.048   0.171  N8   H9F  32  
H9F  C16  C21  C  0  1  N  N  N  -0.183  -37.137  -26.478  -0.693   5.431   0.318  C16  H9F  33  
H9F  C18  C22  C  0  1  N  N  N  -2.563  -37.381  -27.271   1.378   4.673  -0.850  C18  H9F  34  
H9F  C19  C23  C  0  1  N  N  N  -2.908  -37.740  -25.843   0.760   3.277  -0.963  C19  H9F  35  
H9F  C23  C24  C  0  1  N  N  N  -7.567  -31.105  -25.446   0.693  -5.431   0.318  C23  H9F  36  
H9F  H1   H1   H  0  1  N  N  N   0.062  -30.936  -23.348  -3.622  -1.961  -0.343  H1   H9F  37  
H9F  H2   H2   H  0  1  N  N  N  -1.580  -30.654  -24.019  -5.272  -1.294  -0.342  H2   H9F  38  
H9F  H3   H3   H  0  1  N  N  N  -1.728  -30.395  -21.687  -4.825  -2.805   1.615  H3   H9F  39  
H9F  H4   H4   H  0  1  N  N  N  -2.483  -31.976  -22.083  -3.557  -1.677   2.153  H4   H9F  40  
H9F  H5   H5   H  0  1  N  N  N   1.092  -34.558  -24.456  -5.576   2.535  -1.270  H5   H9F  41  
H9F  H6   H6   H  0  1  N  N  N   1.881  -33.095  -23.776  -4.047   1.800  -1.809  H6   H9F  42  
H9F  H7   H7   H  0  1  N  N  N  -7.633  -38.525  -25.051   5.272   1.295  -0.341  H7   H9F  43  
H9F  H8   H8   H  0  1  N  N  N  -5.859  -38.255  -24.971   3.621   1.962  -0.341  H8   H9F  44  
H9F  H9   H9   H  0  1  N  N  N  -0.642  -38.453  -24.831  -1.802   3.935  -0.766  H9   H9F  45  
H9F  H10  H10  H  0  1  N  N  N  -0.067  -36.821  -24.347  -1.920   3.799   1.005  H10  H9F  46  
H9F  H11  H11  H  0  1  N  N  N  -0.967  -38.767  -27.646  -0.286   5.676  -1.785  H11  H9F  47  
H9F  H12  H12  H  0  1  N  N  N  -0.832  -37.209  -28.530   0.695   6.714  -0.720  H12  H9F  48  
H9F  H13  H13  H  0  1  N  N  N  -4.037  -31.336  -23.842  -0.200  -3.202  -1.895  H13  H9F  49  
H9F  H14  H14  H  0  1  N  N  N  -5.458  -30.405  -23.259  -1.551  -2.528  -0.954  H14  H9F  50  
H9F  H15  H15  H  0  1  N  N  N  -4.223  -30.520  -25.926  -1.950  -4.744   0.075  H15  H9F  51  
H9F  H16  H16  H  0  1  N  N  N  -5.313  -29.288  -25.203  -2.038  -4.848  -1.700  H16  H9F  52  
H9F  H17  H17  H  0  1  N  N  N  -6.005  -31.802  -26.738  -0.695  -6.713  -0.720  H17  H9F  53  
H9F  H18  H18  H  0  1  N  N  N  -6.522  -30.106  -27.029   0.286  -5.676  -1.785  H18  H9F  54  
H9F  H19  H19  H  0  1  N  N  N  -7.693  -31.483  -23.337   1.801  -3.935  -0.767  H19  H9F  55  
H9F  H20  H20  H  0  1  N  N  N  -7.871  -32.939  -24.374   1.920  -3.799   1.004  H20  H9F  56  
H9F  H21  H21  H  0  1  N  N  N  -1.067  -32.084  -20.278  -5.664  -1.201   3.173  H21  H9F  57  
H9F  H22  H22  H  0  1  N  N  N   0.664  -31.700  -25.300  -4.185   2.056   0.686  H22  H9F  58  
H9F  H23  H23  H  0  1  N  N  N  -0.084  -33.147  -26.056  -5.588   0.960   0.687  H23  H9F  59  
H9F  H24  H24  H  0  1  N  N  N   3.103  -34.038  -25.536  -5.942   0.762  -2.828  H24  H9F  60  
H9F  H25  H25  H  0  1  N  N  N  -8.671  -35.409  -24.052   5.588  -0.960   0.686  H25  H9F  61  
H9F  H26  H26  H  0  1  N  N  N  -9.048  -37.149  -23.817   4.186  -2.056   0.685  H26  H9F  62  
H9F  H27  H27  H  0  1  N  N  N  -9.366  -35.928  -21.749   5.576  -2.534  -1.273  H27  H9F  63  
H9F  H28  H28  H  0  1  N  N  N  -7.985  -37.067  -21.592   4.047  -1.798  -1.811  H28  H9F  64  
H9F  H29  H29  H  0  1  N  N  N  -7.541  -34.989  -20.709   5.941  -0.759  -2.829  H29  H9F  65  
H9F  H30  H30  H  0  1  N  N  N  -6.712  -38.229  -22.308   4.825   2.804   1.617  H30  H9F  66  
H9F  H31  H31  H  0  1  N  N  N  -7.647  -39.554  -23.082   3.558   1.675   2.154  H31  H9F  67  
H9F  H32  H32  H  0  1  N  N  N  -5.582  -40.239  -22.318   5.664   1.198   3.174  H32  H9F  68  
H9F  H33  H33  H  0  1  N  N  N   0.798  -37.624  -26.579  -1.513   6.148   0.302  H33  H9F  69  
H9F  H34  H34  H  0  1  N  N  N  -0.071  -36.053  -26.626  -0.154   5.514   1.261  H34  H9F  70  
H9F  H35  H35  H  0  1  N  N  N  -2.751  -36.309  -27.427   2.037   4.848  -1.701  H35  H9F  71  
H9F  H36  H36  H  0  1  N  N  N  -3.197  -37.968  -27.952   1.950   4.744   0.075  H36  H9F  72  
H9F  H37  H37  H  0  1  N  N  N  -3.972  -37.534  -25.656   1.551   2.528  -0.954  H37  H9F  73  
H9F  H38  H38  H  0  1  N  N  N  -2.705  -38.807  -25.670   0.200   3.202  -1.895  H38  H9F  74  
H9F  H39  H39  H  0  1  N  N  N  -7.955  -30.137  -25.097   0.154  -5.514   1.261  H39  H9F  75  
H9F  H40  H40  H  0  1  N  N  N  -8.314  -31.587  -26.093   1.514  -6.148   0.302  H40  H9F  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H9F  C17  C18  SING  N  N   1  
H9F  C17  C16  SING  N  N   2  
H9F  C18  C19  SING  N  N   3  
H9F  C16  C15  SING  N  N   4  
H9F  C22  C23  SING  N  N   5  
H9F  C22  C21  SING  N  N   6  
H9F  C19  N7   SING  N  N   7  
H9F  O2   C10  SING  N  N   8  
H9F  C23  C24  SING  N  N   9  
H9F  C21  C20  SING  N  N  10  
H9F  C9   C10  SING  N  N  11  
H9F  C9   N5   SING  N  N  12  
H9F  C15  N7   SING  N  N  13  
H9F  N7   C2   SING  N  N  14  
H9F  C2   N1   DOUB  Y  N  15  
H9F  C2   C1   SING  Y  N  16  
H9F  N1   C3   SING  Y  N  17  
H9F  C1   N4   SING  Y  N  18  
H9F  C1   C4   DOUB  Y  N  19  
H9F  N4   C6   DOUB  Y  N  20  
H9F  C13  N6   SING  N  N  21  
H9F  C13  C14  SING  N  N  22  
H9F  C6   N6   SING  N  N  23  
H9F  C6   N3   SING  Y  N  24  
H9F  C3   N2   DOUB  Y  N  25  
H9F  C3   N5   SING  N  N  26  
H9F  C4   N2   SING  Y  N  27  
H9F  C4   C5   SING  Y  N  28  
H9F  C24  N8   SING  N  N  29  
H9F  N5   C7   SING  N  N  30  
H9F  N6   C11  SING  N  N  31  
H9F  C5   N3   DOUB  Y  N  32  
H9F  C5   N8   SING  N  N  33  
H9F  N8   C20  SING  N  N  34  
H9F  C11  C12  SING  N  N  35  
H9F  C7   C8   SING  N  N  36  
H9F  C14  O4   SING  N  N  37  
H9F  C12  O3   SING  N  N  38  
H9F  C8   O1   SING  N  N  39  
H9F  C7   H1   SING  N  N  40  
H9F  C7   H2   SING  N  N  41  
H9F  C8   H3   SING  N  N  42  
H9F  C8   H4   SING  N  N  43  
H9F  C10  H5   SING  N  N  44  
H9F  C10  H6   SING  N  N  45  
H9F  C13  H7   SING  N  N  46  
H9F  C13  H8   SING  N  N  47  
H9F  C15  H9   SING  N  N  48  
H9F  C15  H10  SING  N  N  49  
H9F  C17  H11  SING  N  N  50  
H9F  C17  H12  SING  N  N  51  
H9F  C20  H13  SING  N  N  52  
H9F  C20  H14  SING  N  N  53  
H9F  C21  H15  SING  N  N  54  
H9F  C21  H16  SING  N  N  55  
H9F  C22  H17  SING  N  N  56  
H9F  C22  H18  SING  N  N  57  
H9F  C24  H19  SING  N  N  58  
H9F  C24  H20  SING  N  N  59  
H9F  O1   H21  SING  N  N  60  
H9F  C9   H22  SING  N  N  61  
H9F  C9   H23  SING  N  N  62  
H9F  O2   H24  SING  N  N  63  
H9F  C11  H25  SING  N  N  64  
H9F  C11  H26  SING  N  N  65  
H9F  C12  H27  SING  N  N  66  
H9F  C12  H28  SING  N  N  67  
H9F  O3   H29  SING  N  N  68  
H9F  C14  H30  SING  N  N  69  
H9F  C14  H31  SING  N  N  70  
H9F  O4   H32  SING  N  N  71  
H9F  C16  H33  SING  N  N  72  
H9F  C16  H34  SING  N  N  73  
H9F  C18  H35  SING  N  N  74  
H9F  C18  H36  SING  N  N  75  
H9F  C19  H37  SING  N  N  76  
H9F  C19  H38  SING  N  N  77  
H9F  C23  H39  SING  N  N  78  
H9F  C23  H40  SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H9F  InChI             InChI                 1.03   "InChI=1S/C24H40N8O4/c33-15-11-31(12-16-34)23-26-20-19(21(27-23)29-7-3-1-4-8-29)25-24(32(13-17-35)14-18-36)28-22(20)30-9-5-2-6-10-30/h33-36H,1-18H2"  
H9F  InChIKey          InChI                 1.03   IZEKFCXSFNUWAM-UHFFFAOYSA-N  
H9F  SMILES_CANONICAL  CACTVS                3.385  "OCCN(CCO)c1nc(N2CCCCC2)c3nc(nc(N4CCCCC4)c3n1)N(CCO)CCO"  
H9F  SMILES            CACTVS                3.385  "OCCN(CCO)c1nc(N2CCCCC2)c3nc(nc(N4CCCCC4)c3n1)N(CCO)CCO"  
H9F  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1CCN(CC1)c2c3c(c(nc(n3)N(CCO)CCO)N4CCCCC4)nc(n2)N(CCO)CCO"  
H9F  SMILES            "OpenEye OEToolkits"  2.0.7  "C1CCN(CC1)c2c3c(c(nc(n3)N(CCO)CCO)N4CCCCC4)nc(n2)N(CCO)CCO"  
#
_pdbx_chem_comp_identifier.comp_id          H9F
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-[[2-[bis(2-hydroxyethyl)amino]-4,8-di(piperidin-1-yl)pyrimido[5,4-d]pyrimidin-6-yl]-(2-hydroxyethyl)amino]ethanol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H9F  "Create component"  2020-12-04  PDBJ  
H9F  "Initial release"   2021-12-08  RCSB  
##
