data_H6F
# 
_chem_comp.id                                    H6F 
_chem_comp.name                                  "~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]naphthalene-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H40 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-11-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        536.662 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     H6F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7DGH 
_chem_comp.pdbx_subcomponent_list                "FIV VAL LEU ELF" 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
H6F O37 O3  O 0 1 N N N N N N -21.298 14.740 -21.638 4.367  -0.285 2.200  O2   FIV 1  
H6F C26 C9  C 0 1 N N N N N N -20.120 14.912 -21.511 4.261  0.055  1.038  C11  FIV 2  
H6F C27 C22 C 0 1 Y N N N N N -19.273 14.208 -20.429 5.469  0.223  0.203  C7   FIV 3  
H6F C36 C30 C 0 1 Y N N N N N -18.039 13.620 -20.747 5.340  0.622  -1.139 C8   FIV 4  
H6F C35 C29 C 0 1 Y N N N N N -17.277 13.003 -19.738 6.434  0.783  -1.925 C3   FIV 5  
H6F C28 C10 C 0 1 Y N N N N N -19.739 14.196 -19.114 6.720  -0.008 0.751  C5   FIV 6  
H6F C29 C23 C 0 1 Y N N N N N -18.972 13.562 -18.090 7.862  0.153  -0.047 C2   FIV 7  
H6F C30 C24 C 0 1 Y N N N N N -19.472 13.541 -16.749 9.150  -0.072 0.473  C6   FIV 8  
H6F C31 C25 C 0 1 Y N N N N N -18.721 12.934 -15.739 10.238 0.094  -0.327 C10  FIV 9  
H6F C32 C26 C 0 1 Y N N N N N -17.485 12.334 -16.043 10.096 0.485  -1.658 C9   FIV 10 
H6F C33 C27 C 0 1 Y N N N N N -17.001 12.351 -17.355 8.866  0.712  -2.195 C4   FIV 11 
H6F C34 C28 C 0 1 Y N N N N N -17.768 12.983 -18.390 7.719  0.550  -1.401 C1   FIV 12 
H6F N25 N4  N 0 1 N N N N N N -19.443 15.870 -22.380 3.041  0.274  0.509  N    VAL 13 
H6F C21 C6  C 0 1 N N S N N N -20.230 16.564 -23.386 1.843  0.101  1.334  CA   VAL 14 
H6F C20 C5  C 0 1 N N N N N N -19.432 16.625 -24.678 0.663  -0.206 0.449  C    VAL 15 
H6F O38 O4  O 0 1 N N N N N N -18.317 17.020 -24.646 0.717  0.032  -0.739 O    VAL 16 
H6F C22 C7  C 0 1 N N N N N N -20.414 18.004 -22.966 1.573  1.388  2.116  CB   VAL 17 
H6F C24 C8  C 0 1 N N N N N N -20.993 18.099 -21.548 1.309  2.534  1.137  CG1  VAL 18 
H6F C23 C21 C 0 1 N N N N N N -21.233 18.757 -24.007 0.349  1.193  3.014  CG2  VAL 19 
H6F N19 N3  N 0 1 N N N N N N -20.062 16.202 -25.932 -0.454 -0.744 0.977  N    LEU 20 
H6F C14 C18 C 0 1 N N S N N N -19.305 16.271 -27.172 -1.548 -1.170 0.101  CA   LEU 21 
H6F C13 C2  C 0 1 N N N N N N -19.273 17.726 -27.621 -2.856 -1.066 0.842  C    LEU 22 
H6F O39 O5  O 0 1 N N N N N N -20.243 18.400 -27.550 -2.864 -1.027 2.054  O    LEU 23 
H6F C15 C3  C 0 1 N N N N N N -20.005 15.431 -28.235 -1.321 -2.620 -0.331 CB   LEU 24 
H6F C16 C19 C 0 1 N N N N N N -19.915 13.944 -27.881 -2.422 -3.041 -1.306 CG   LEU 25 
H6F C17 C4  C 0 1 N N N N N N -18.452 13.580 -27.628 -2.307 -2.219 -2.592 CD1  LEU 26 
H6F C18 C20 C 0 1 N N N N N N -20.514 13.053 -28.976 -2.272 -4.527 -1.635 CD2  LEU 27 
H6F C07 C16 C 0 1 N N N N N N -19.152 21.939 -24.896 -5.770 3.501  0.154  C6   ELF 28 
H6F C03 C12 C 0 1 N N S N N N -18.050 19.679 -28.596 -5.283 -0.851 0.875  C11  ELF 29 
H6F C06 C15 C 0 1 N N N N N N -18.840 21.486 -26.255 -5.925 2.065  0.671  C13  ELF 30 
H6F C10 C1  C 0 1 N N N N N N -16.424 21.471 -25.479 -6.868 1.609  -1.580 C15  ELF 31 
H6F C04 C13 C 0 1 N N N N N N -17.111 20.548 -27.750 -6.338 -0.283 -0.076 C17  ELF 32 
H6F C02 C11 C 0 1 N N N N N N -17.576 19.638 -30.048 -5.743 -2.189 1.394  C24  ELF 33 
H6F C05 C14 C 0 1 N N S N N N -17.614 20.753 -26.256 -5.914 1.116  -0.530 C25  ELF 34 
H6F C08 C17 C 0 1 N N N N N N -18.229 23.033 -24.502 -7.028 3.879  -0.628 C27  ELF 35 
H6F N12 N1  N 0 1 N N N N N N -18.035 18.295 -28.141 -4.016 -1.015 0.158  N3   ELF 36 
H6F N09 N2  N 0 1 N N N N N N -16.754 22.654 -24.578 -7.339 2.856  -1.619 N4   ELF 37 
H6F O01 O1  O 0 1 N N N N N N -17.607 20.637 -30.685 -5.081 -3.178 1.185  O3   ELF 38 
H6F O11 O2  O 0 1 N N N N N N -15.308 21.088 -25.603 -7.228 0.832  -2.439 O4   ELF 39 
H6F H37 H37 H 0 1 N N N N N N -17.675 13.641 -21.764 4.357  0.803  -1.549 H2   FIV 40 
H6F H36 H36 H 0 1 N N N N N N -16.328 12.547 -19.977 6.319  1.090  -2.954 H3   FIV 41 
H6F H12 H12 H 0 1 N N N N N N -20.680 14.666 -18.871 6.815  -0.310 1.783  H4   FIV 42 
H6F H32 H32 H 0 1 N N N N N N -20.426 13.992 -16.519 9.274  -0.375 1.502  H5   FIV 43 
H6F H33 H33 H 0 1 N N N N N N -19.090 12.925 -14.724 11.225 -0.079 0.074  H6   FIV 44 
H6F H34 H34 H 0 1 N N N N N N -16.909 11.860 -15.262 10.976 0.610  -2.272 H7   FIV 45 
H6F H35 H35 H 0 1 N N N N N N -16.053 11.890 -17.588 8.773  1.015  -3.227 H8   FIV 46 
H6F H40 H40 H 0 1 N N N N N N -18.463 16.044 -22.286 2.956  0.545  -0.419 H    VAL 47 
H6F H7  H7  H 0 1 N N N N N N -21.202 16.076 -23.551 1.997  -0.722 2.032  HA   VAL 48 
H6F H8  H8  H 0 1 N N N N N N -19.417 18.468 -22.939 2.440  1.628  2.731  HB   VAL 49 
H6F H9  H9  H 0 1 N N N N N N -20.354 17.535 -20.852 0.442  2.294  0.522  HG11 VAL 50 
H6F H10 H10 H 0 1 N N N N N N -21.032 19.154 -21.238 1.117  3.451  1.694  HG12 VAL 51 
H6F H11 H11 H 0 1 N N N N N N -22.009 17.676 -21.538 2.181  2.674  0.498  HG13 VAL 52 
H6F H29 H29 H 0 1 N N N N N N -21.359 19.802 -23.689 -0.542 1.084  2.395  HG21 VAL 53 
H6F H30 H30 H 0 1 N N N N N N -20.711 18.729 -24.975 0.482  0.296  3.619  HG22 VAL 54 
H6F H31 H31 H 0 1 N N N N N N -22.221 18.283 -24.109 0.235  2.058  3.666  HG23 VAL 55 
H6F H39 H39 H 0 1 N N N N N N -21.005 15.869 -25.935 -0.534 -0.850 1.938  H2   LEU 56 
H6F H24 H24 H 0 1 N N N N N N -18.279 15.904 -27.024 -1.578 -0.529 -0.781 HA   LEU 57 
H6F H2  H2  H 0 1 N N N N N N -19.523 15.602 -29.209 -0.350 -2.706 -0.820 HB2  LEU 58 
H6F H3  H3  H 0 1 N N N N N N -21.063 15.727 -28.293 -1.344 -3.268 0.545  HB3  LEU 59 
H6F H25 H25 H 0 1 N N N N N N -20.479 13.775 -26.952 -3.397 -2.866 -0.850 HG   LEU 60 
H6F H4  H4  H 0 1 N N N N N N -18.043 14.230 -26.841 -3.133 -2.468 -3.257 HD11 LEU 61 
H6F H5  H5  H 0 1 N N N N N N -18.386 12.530 -27.308 -2.343 -1.157 -2.349 HD12 LEU 62 
H6F H6  H6  H 0 1 N N N N N N -17.875 13.718 -28.554 -1.362 -2.447 -3.085 HD13 LEU 63 
H6F H26 H26 H 0 1 N N N N N N -20.427 11.997 -28.679 -2.354 -5.112 -0.720 HD21 LEU 64 
H6F H27 H27 H 0 1 N N N N N N -21.575 13.308 -29.117 -3.057 -4.827 -2.330 HD22 LEU 65 
H6F H28 H28 H 0 1 N N N N N N -19.970 13.214 -29.918 -1.297 -4.701 -2.091 HD23 LEU 66 
H6F H20 H20 H 0 1 N N N N N N -20.188 22.307 -24.863 -5.645 4.181  0.997  H1   ELF 67 
H6F H21 H21 H 0 1 N N N N N N -19.039 21.098 -24.197 -4.900 3.565  -0.499 H2   ELF 68 
H6F H14 H14 H 0 1 N N N N N N -19.070 20.090 -28.552 -5.141 -0.167 1.712  H3   ELF 69 
H6F H18 H18 H 0 1 N N N N N N -18.743 22.359 -26.917 -5.097 1.824  1.337  H4   ELF 70 
H6F H19 H19 H 0 1 N N N N N N -19.652 20.839 -26.619 -6.868 1.968  1.208  H5   ELF 71 
H6F H15 H15 H 0 1 N N N N N N -16.122 20.067 -27.722 -6.432 -0.934 -0.945 H6   ELF 72 
H6F H16 H16 H 0 1 N N N N N N -17.025 21.535 -28.227 -7.297 -0.222 0.439  H7   ELF 73 
H6F H13 H13 H 0 1 N N N N N N -17.220 18.717 -30.485 -6.665 -2.265 1.952  H8   ELF 74 
H6F H17 H17 H 0 1 N N N N N N -17.764 19.760 -25.807 -4.909 1.071  -0.948 H9   ELF 75 
H6F H22 H22 H 0 1 N N N N N N -18.401 23.889 -25.171 -7.866 3.977  0.063  H10  ELF 76 
H6F H23 H23 H 0 1 N N N N N N -18.459 23.324 -23.466 -6.865 4.830  -1.135 H11  ELF 77 
H6F H1  H1  H 0 1 N N N N N N -17.198 17.750 -28.184 -4.012 -1.086 -0.809 H12  ELF 78 
H6F H38 H38 H 0 1 N N N N N N -16.050 23.150 -24.070 -7.926 3.098  -2.353 H15  ELF 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
H6F O01 C02 DOUB N N 1  
H6F C02 C03 SING N N 2  
H6F C18 C16 SING N N 3  
H6F C03 N12 SING N N 4  
H6F C03 C04 SING N N 5  
H6F C15 C16 SING N N 6  
H6F C15 C14 SING N N 7  
H6F N12 C13 SING N N 8  
H6F C16 C17 SING N N 9  
H6F C04 C05 SING N N 10 
H6F C13 O39 DOUB N N 11 
H6F C13 C14 SING N N 12 
H6F C14 N19 SING N N 13 
H6F C05 C06 SING N N 14 
H6F C05 C10 SING N N 15 
H6F C06 C07 SING N N 16 
H6F N19 C20 SING N N 17 
H6F O11 C10 DOUB N N 18 
H6F C10 N09 SING N N 19 
H6F C07 C08 SING N N 20 
H6F C20 O38 DOUB N N 21 
H6F C20 C21 SING N N 22 
H6F N09 C08 SING N N 23 
H6F C23 C22 SING N N 24 
H6F C21 C22 SING N N 25 
H6F C21 N25 SING N N 26 
H6F C22 C24 SING N N 27 
H6F N25 C26 SING N N 28 
H6F O37 C26 DOUB N N 29 
H6F C26 C27 SING N N 30 
H6F C36 C27 DOUB Y N 31 
H6F C36 C35 SING Y N 32 
H6F C27 C28 SING Y N 33 
H6F C35 C34 DOUB Y N 34 
H6F C28 C29 DOUB Y N 35 
H6F C34 C29 SING Y N 36 
H6F C34 C33 SING Y N 37 
H6F C29 C30 SING Y N 38 
H6F C33 C32 DOUB Y N 39 
H6F C30 C31 DOUB Y N 40 
H6F C32 C31 SING Y N 41 
H6F N12 H1  SING N N 42 
H6F C15 H2  SING N N 43 
H6F C15 H3  SING N N 44 
H6F C17 H4  SING N N 45 
H6F C17 H5  SING N N 46 
H6F C17 H6  SING N N 47 
H6F C21 H7  SING N N 48 
H6F C22 H8  SING N N 49 
H6F C24 H9  SING N N 50 
H6F C24 H10 SING N N 51 
H6F C24 H11 SING N N 52 
H6F C28 H12 SING N N 53 
H6F C02 H13 SING N N 54 
H6F C03 H14 SING N N 55 
H6F C04 H15 SING N N 56 
H6F C04 H16 SING N N 57 
H6F C05 H17 SING N N 58 
H6F C06 H18 SING N N 59 
H6F C06 H19 SING N N 60 
H6F C07 H20 SING N N 61 
H6F C07 H21 SING N N 62 
H6F C08 H22 SING N N 63 
H6F C08 H23 SING N N 64 
H6F C14 H24 SING N N 65 
H6F C16 H25 SING N N 66 
H6F C18 H26 SING N N 67 
H6F C18 H27 SING N N 68 
H6F C18 H28 SING N N 69 
H6F C23 H29 SING N N 70 
H6F C23 H30 SING N N 71 
H6F C23 H31 SING N N 72 
H6F C30 H32 SING N N 73 
H6F C31 H33 SING N N 74 
H6F C32 H34 SING N N 75 
H6F C33 H35 SING N N 76 
H6F C35 H36 SING N N 77 
H6F C36 H37 SING N N 78 
H6F N09 H38 SING N N 79 
H6F N19 H39 SING N N 80 
H6F N25 H40 SING N N 81 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
H6F InChI            InChI                1.03  "InChI=1S/C30H40N4O5/c1-18(2)14-25(29(38)32-24(17-35)16-22-10-7-13-31-27(22)36)33-30(39)26(19(3)4)34-28(37)23-12-11-20-8-5-6-9-21(20)15-23/h5-6,8-9,11-12,15,17-19,22,24-26H,7,10,13-14,16H2,1-4H3,(H,31,36)(H,32,38)(H,33,39)(H,34,37)/t22-,24-,25-,26-/m0/s1" 
H6F InChIKey         InChI                1.03  VUMQTHGFOAZOLH-GKXKVECMSA-N                                                                                                                                                                                                                                     
H6F SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)c1ccc2ccccc2c1)C(C)C)C(=O)N[C@@H](C[C@@H]3CCCNC3=O)C=O"                                                                                                                                                                         
H6F SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)[CH](NC(=O)c1ccc2ccccc2c1)C(C)C)C(=O)N[CH](C[CH]3CCCNC3=O)C=O"                                                                                                                                                                                
H6F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C=O)NC(=O)[C@H](C(C)C)NC(=O)c2ccc3ccccc3c2"                                                                                                                                                                         
H6F SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCCNC1=O)C=O)NC(=O)C(C(C)C)NC(=O)c2ccc3ccccc3c2"                                                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           H6F 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]naphthalene-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
H6F "Create component" 2020-11-18 PDBJ 
H6F "Initial release"  2021-11-24 RCSB 
H6F "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            H6F 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C02 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
