data_GZF
#

_chem_comp.id                                   GZF
_chem_comp.name                                 "[(2R,3R,4S,5S)-5-(2-azanyl-6-oxidanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl bis(oxidanyl)phosphinothioyl hydrogen phosphate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H15 N5 O10 P2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-10-12
_chem_comp.pdbx_modified_date                   2021-03-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       459.266
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GZF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7D8Q
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GZF  O01  O1   O  0  1  N  N  N  -34.073   -2.077  21.701  -0.803  -3.474  -0.188  O01  GZF   1  
GZF  C02  C1   C  0  1  N  N  R  -33.869   -3.438  21.303  -1.053  -2.748   1.018  C02  GZF   2  
GZF  C03  C2   C  0  1  N  N  R  -32.626   -4.017  21.664  -0.114  -1.528   1.128  C03  GZF   3  
GZF  C04  C3   C  0  1  N  N  N  -31.920   -3.936  23.076   1.132  -1.751   0.269  C04  GZF   4  
GZF  O05  O2   O  0  1  N  N  N  -32.515   -4.722  24.116   2.047  -0.672   0.467  O05  GZF   5  
GZF  P06  P1   P  0  1  N  N  N  -32.182   -4.101  25.532   3.469  -0.580  -0.282  P06  GZF   6  
GZF  O07  O3   O  0  1  N  N  N  -33.146   -4.567  26.574   3.232  -0.413  -1.865  O07  GZF   7  
GZF  O08  O4   O  0  1  N  N  N  -32.096   -2.566  25.524   4.242  -1.816  -0.026  O08  GZF   8  
GZF  O09  O5   O  0  1  N  N  N  -30.685   -4.673  25.793   4.287   0.690   0.275  O09  GZF   9  
GZF  P10  P2   P  0  1  N  N  N  -29.787   -5.049  27.065   5.826   1.156   0.185  P10  GZF  10  
GZF  O11  O6   O  0  1  N  N  N  -28.436   -5.354  26.302   6.010   2.552   0.967  O11  GZF  11  
GZF  O12  O7   O  0  1  N  N  N  -29.792   -3.881  28.103   6.766   0.036   0.859  O12  GZF  12  
GZF  S13  S1   S  0  1  N  N  N  -30.549   -6.708  27.863   6.305   1.377  -1.602  S13  GZF  13  
GZF  O14  O8   O  0  1  N  N  N  -32.934   -5.585  21.617  -0.834  -0.384   0.653  O14  GZF  14  
GZF  C15  C4   C  0  1  N  N  S  -34.108   -5.605  22.252  -2.142  -0.777   0.209  C15  GZF  15  
GZF  N16  N1   N  0  1  Y  N  N  -34.510   -6.998  22.571  -3.124   0.259   0.541  N16  GZF  16  
GZF  C17  C5   C  0  1  Y  N  N  -33.686   -7.601  23.463  -3.009   1.194   1.528  C17  GZF  17  
GZF  N18  N2   N  0  1  Y  N  N  -34.092   -8.809  23.763  -4.063   1.956   1.543  N18  GZF  18  
GZF  C19  C6   C  0  1  Y  N  N  -35.256   -9.010  23.071  -4.921   1.560   0.570  C19  GZF  19  
GZF  C20  C7   C  0  1  Y  N  N  -36.090  -10.152  23.036  -6.180   1.996   0.129  C20  GZF  20  
GZF  O21  O9   O  0  1  N  N  N  -35.827  -11.135  23.693  -6.795   3.046   0.725  O21  GZF  21  
GZF  N22  N3   N  0  1  Y  N  N  -37.165  -10.064  22.252  -6.754   1.360  -0.883  N22  GZF  22  
GZF  C23  C8   C  0  1  Y  N  N  -37.458   -8.957  21.523  -6.159   0.331  -1.474  C23  GZF  23  
GZF  N24  N4   N  0  1  N  N  N  -38.651   -8.974  20.702  -6.804  -0.303  -2.523  N24  GZF  24  
GZF  N25  N5   N  0  1  Y  N  N  -36.691   -7.856  21.531  -4.973  -0.114  -1.090  N25  GZF  25  
GZF  C26  C9   C  0  1  Y  N  N  -35.557   -7.864  22.320  -4.325   0.470  -0.088  C26  GZF  26  
GZF  C27  C10  C  0  1  N  N  S  -35.003   -4.444  21.684  -2.456  -2.083   0.981  C27  GZF  27  
GZF  O28  O10  O  0  1  N  N  N  -35.860   -4.086  22.754  -3.391  -2.892   0.265  O28  GZF  28  
GZF  H1   H1   H  0  1  N  N  N  -34.930   -1.787  21.412  -1.368  -4.250  -0.303  H1   GZF  29  
GZF  H2   H2   H  0  1  N  N  N  -33.880   -3.426  20.203  -0.953  -3.395   1.889  H2   GZF  30  
GZF  H3   H3   H  0  1  N  N  N  -31.871   -3.801  20.894   0.176  -1.377   2.168  H3   GZF  31  
GZF  H4   H4   H  0  1  N  N  N  -30.879   -4.271  22.953   1.607  -2.689   0.557  H4   GZF  32  
GZF  H5   H5   H  0  1  N  N  N  -31.931   -2.885  23.399   0.845  -1.796  -0.782  H5   GZF  33  
GZF  H6   H6   H  0  1  N  N  N  -33.514   -3.816  27.024   2.731   0.378  -2.107  H6   GZF  34  
GZF  H7   H7   H  0  1  N  N  N  -30.160   -4.187  28.923   6.573  -0.132   1.791  H7   GZF  35  
GZF  H9   H9   H  0  1  N  N  N  -33.858   -5.211  23.248  -2.137  -0.962  -0.865  H9   GZF  36  
GZF  H10  H10  H  0  1  N  N  N  -32.801   -7.140  23.876  -2.167   1.288   2.197  H10  GZF  37  
GZF  H12  H12  H  0  1  N  N  N  -38.740   -8.100  20.224  -6.385  -1.059  -2.964  H12  GZF  38  
GZF  H13  H13  H  0  1  N  N  N  -38.585   -9.715  20.033  -7.674   0.009  -2.817  H13  GZF  39  
GZF  H14  H14  H  0  1  N  N  N  -35.548   -4.776  20.788  -2.815  -1.867   1.987  H14  GZF  40  
GZF  H15  H15  H  0  1  N  N  N  -36.503   -4.772  22.889  -3.536  -3.765   0.656  H15  GZF  41  
GZF  H8   H8   H  0  1  N  N  N  -28.237   -6.281  26.367   6.915   2.893   0.954  H8   GZF  42  
GZF  H16  H16  H  0  1  N  N  N  -36.494  -11.797  23.554  -6.584   3.902   0.329  H16  GZF  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GZF  N24  C23  SING  N  N   1  
GZF  C02  C03  SING  N  N   2  
GZF  C02  C27  SING  N  N   3  
GZF  C02  O01  SING  N  N   4  
GZF  C23  N25  DOUB  Y  N   5  
GZF  C23  N22  SING  Y  N   6  
GZF  N25  C26  SING  Y  N   7  
GZF  O14  C03  SING  N  N   8  
GZF  O14  C15  SING  N  N   9  
GZF  C03  C04  SING  N  N  10  
GZF  C27  C15  SING  N  N  11  
GZF  C27  O28  SING  N  N  12  
GZF  C15  N16  SING  N  N  13  
GZF  N22  C20  DOUB  Y  N  14  
GZF  C26  N16  SING  Y  N  15  
GZF  C26  C19  DOUB  Y  N  16  
GZF  N16  C17  SING  Y  N  17  
GZF  C20  C19  SING  Y  N  18  
GZF  C20  O21  SING  N  N  19  
GZF  C19  N18  SING  Y  N  20  
GZF  C04  O05  SING  N  N  21  
GZF  C17  N18  DOUB  Y  N  22  
GZF  O05  P06  SING  N  N  23  
GZF  O08  P06  DOUB  N  N  24  
GZF  P06  O09  SING  N  N  25  
GZF  P06  O07  SING  N  N  26  
GZF  O09  P10  SING  N  N  27  
GZF  O11  P10  SING  N  N  28  
GZF  P10  S13  DOUB  N  N  29  
GZF  P10  O12  SING  N  N  30  
GZF  O01  H1   SING  N  N  31  
GZF  C02  H2   SING  N  N  32  
GZF  C03  H3   SING  N  N  33  
GZF  C04  H4   SING  N  N  34  
GZF  C04  H5   SING  N  N  35  
GZF  O07  H6   SING  N  N  36  
GZF  O12  H7   SING  N  N  37  
GZF  C15  H9   SING  N  N  38  
GZF  C17  H10  SING  N  N  39  
GZF  N24  H12  SING  N  N  40  
GZF  N24  H13  SING  N  N  41  
GZF  C27  H14  SING  N  N  42  
GZF  O28  H15  SING  N  N  43  
GZF  O11  H8   SING  N  N  44  
GZF  O21  H16  SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GZF  InChI             InChI                 1.03   "InChI=1S/C10H15N5O10P2S/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(24-9)1-23-26(19,20)25-27(21,22)28/h2-3,5-6,9,16-17H,1H2,(H,19,20)(H2,21,22,28)(H3,11,13,14,18)/t3-,5+,6+,9+/m1/s1"  
GZF  InChIKey          InChI                 1.03   QJXJXBXFIOTYHB-KHLHZJAASA-N  
GZF  SMILES_CANONICAL  CACTVS                3.385  "Nc1nc(O)c2ncn([C@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=S)[C@H](O)[C@@H]3O)c2n1"  
GZF  SMILES            CACTVS                3.385  "Nc1nc(O)c2ncn([CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=S)[CH](O)[CH]3O)c2n1"  
GZF  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc2c(n1[C@@H]3[C@H]([C@H]([C@H](O3)COP(=O)(O)OP(=S)(O)O)O)O)nc(nc2O)N"  
GZF  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=S)(O)O)O)O)nc(nc2O)N"  
#
_pdbx_chem_comp_identifier.comp_id          GZF
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{R},4~{S},5~{S})-5-(2-azanyl-6-oxidanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl bis(oxidanyl)phosphinothioyl hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GZF  "Create component"  2020-10-12  PDBJ  
GZF  "Initial release"   2021-03-17  RCSB  
##
