data_GJF
# 
_chem_comp.id                                    GJF 
_chem_comp.name                                  "(1~{R},3~{S},6~{R},8~{R},9~{R},10~{S},12~{S},15~{R},17~{R},18~{R})-8,17-bis(6-aminopurin-9-yl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecane-9,18-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H24 N10 O10 P2 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-15 
_chem_comp.pdbx_modified_date                    2022-09-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        690.543 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GJF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7XQ1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GJF C1  C4  C 0 1 Y N N 166.870 161.369 157.453 -5.657 -0.200 0.056  C1  GJF 1  
GJF C2  C5  C 0 1 Y N N 165.669 161.270 158.012 -6.250 -1.431 -0.273 C2  GJF 2  
GJF C3  C6  C 0 1 Y N N 164.784 160.362 157.607 -7.546 -1.691 0.204  C3  GJF 3  
GJF C4  C8  C 0 1 Y N N 166.712 162.889 158.978 -4.280 -1.400 -1.180 C4  GJF 4  
GJF N1  N1  N 0 1 Y N N 165.066 159.489 156.641 -8.147 -0.765 0.943  N1  GJF 5  
GJF N2  N3  N 0 1 Y N N 167.219 160.540 156.461 -6.339 0.668  0.797  N2  GJF 6  
GJF C5  CAF C 0 1 N N R 167.953 168.097 160.264 3.112  0.372  -0.644 C5  GJF 7  
GJF C6  CAG C 0 1 N N R 166.701 168.913 160.157 4.196  -0.015 0.379  C6  GJF 8  
GJF C7  CAI C 0 1 N N R 168.299 170.009 158.905 4.021  2.342  0.434  C7  GJF 9  
GJF C8  CAJ C 0 1 N N R 169.004 169.149 159.942 3.379  1.877  -0.891 C8  GJF 10 
GJF O1  OAH O 0 1 N N N 166.916 169.557 158.895 4.593  1.184  1.050  O1  GJF 11 
GJF O2  OAK O 0 1 N N N 169.284 169.970 161.085 4.295  2.049  -1.974 O2  GJF 12 
GJF O3  OAL O 0 1 N N N 168.118 167.594 161.594 3.247  -0.368 -1.853 O3  GJF 13 
GJF O4  OAN O 0 1 N N N 170.325 166.608 162.417 2.419  -0.217 -4.235 O4  GJF 14 
GJF S1  SAO S 0 1 N N N 167.982 165.225 162.918 1.443  -2.639 -2.834 S1  GJF 15 
GJF C9  CBH C 0 1 N N N 168.923 169.839 157.510 2.939  2.929  1.342  C9  GJF 16 
GJF C10 CBJ C 0 1 Y N N 164.392 168.221 160.793 3.577  -2.329 1.195  C10 GJF 17 
GJF C11 CBK C 0 1 Y N N 163.529 167.274 160.435 2.983  -2.820 2.369  C11 GJF 18 
GJF C12 CBM C 0 1 Y N N 165.315 167.032 159.254 3.124  -0.665 2.568  C12 GJF 19 
GJF C13 CBO C 0 1 Y N N 162.831 169.048 162.366 3.714  -4.477 0.389  C13 GJF 20 
GJF C14 CBQ C 0 1 Y N N 162.323 167.206 160.991 2.780  -4.206 2.482  C14 GJF 21 
GJF N3  NBI N 0 1 Y N N 165.487 168.073 160.062 3.649  -0.968 1.347  N3  GJF 22 
GJF N4  NBL N 0 1 Y N N 164.096 166.553 159.475 2.733  -1.753 3.166  N4  GJF 23 
GJF N5  NBN N 0 1 Y N N 164.081 169.109 161.745 3.924  -3.186 0.240  N5  GJF 24 
GJF N6  NBP N 0 1 Y N N 161.943 168.051 161.957 3.159  -4.985 1.474  N6  GJF 25 
GJF N7  NBR N 0 1 N N N 161.534 166.229 160.562 2.200  -4.747 3.615  N7  GJF 26 
GJF O5  OBE O 0 1 N N N 169.420 167.863 154.917 0.564  3.708  -0.876 O5  GJF 27 
GJF O6  OBG O 0 1 N N N 169.625 168.593 157.381 1.662  2.395  0.977  O6  GJF 28 
GJF S2  SBF S 0 1 N N N 167.429 167.159 156.648 0.416  5.081  1.743  S2  GJF 29 
GJF P1  PAM P 0 1 N N S 169.018 166.278 161.801 2.012  -0.597 -2.865 P1  GJF 30 
GJF P2  PBD P 0 1 N N S 169.135 167.477 156.318 0.422  3.328  0.548  P2  GJF 31 
GJF C15 C5* C 0 1 N N N 170.362 165.420 159.718 -0.275 -0.155 -1.548 C15 GJF 32 
GJF O7  O5* O 0 1 N N N 169.103 165.563 160.379 0.770  0.315  -2.399 O7  GJF 33 
GJF C16 C4* C 0 1 N N R 170.199 164.514 158.514 -1.175 1.017  -1.145 C16 GJF 34 
GJF O8  O4* O 0 1 N N N 169.487 163.337 158.908 -2.514 0.755  -1.563 O8  GJF 35 
GJF C17 C3* C 0 1 N N S 169.247 165.141 157.542 -1.174 1.178  0.382  C17 GJF 36 
GJF O9  O3* O 0 1 N N N 169.923 166.133 156.746 -0.961 2.539  0.754  O9  GJF 37 
GJF C18 C2* C 0 1 N N R 168.846 163.936 156.710 -2.584 0.730  0.816  C18 GJF 38 
GJF O10 O2* O 0 1 N N N 169.824 163.650 155.704 -3.091 1.594  1.834  O10 GJF 39 
GJF C19 C1* C 0 1 N N R 168.868 162.808 157.719 -3.421 0.863  -0.467 C19 GJF 40 
GJF C20 C2  C 0 1 Y N N 166.313 159.561 156.030 -7.549 0.378  1.226  C20 GJF 41 
GJF N8  N6  N 0 1 N N N 163.625 160.348 158.249 -8.181 -2.886 -0.088 N8  GJF 42 
GJF N9  N7  N 0 1 Y N N 165.575 162.205 158.950 -5.357 -2.115 -1.028 N9  GJF 43 
GJF N10 N9  N 0 1 Y N N 167.503 162.377 158.048 -4.416 -0.210 -0.529 N10 GJF 44 
GJF H1  H1  H 0 1 N N N 166.948 163.711 159.637 -3.408 -1.704 -1.739 H1  GJF 45 
GJF H2  H2  H 0 1 N N N 167.965 167.293 159.514 2.122  0.233  -0.212 H2  GJF 46 
GJF H3  H3  H 0 1 N N N 166.626 169.635 160.984 5.050  -0.452 -0.135 H3  GJF 47 
GJF H4  H4  H 0 1 N N N 168.356 171.066 159.203 4.788  3.083  0.229  H4  GJF 48 
GJF H5  H5  H 0 1 N N N 169.911 168.688 159.524 2.452  2.408  -1.082 H5  GJF 49 
GJF H6  H6  H 0 1 N N N 169.726 169.452 161.747 4.560  2.967  -2.122 H6  GJF 50 
GJF H7  H7  H 0 1 N N N 168.755 165.089 163.954 0.422  -2.682 -3.708 H7  GJF 51 
GJF H8  H8  H 0 1 N N N 169.629 170.664 157.334 3.154  2.675  2.379  H8  GJF 52 
GJF H9  H9  H 0 1 N N N 168.122 169.875 156.756 2.923  4.014  1.231  H9  GJF 53 
GJF H10 H10 H 0 1 N N N 166.035 166.646 158.547 3.043  0.331  2.978  H10 GJF 54 
GJF H11 H11 H 0 1 N N N 162.560 169.751 163.139 4.008  -5.147 -0.407 H11 GJF 55 
GJF H12 H12 H 0 1 N N N 160.670 166.252 161.066 1.928  -4.168 4.345  H12 GJF 56 
GJF H13 H13 H 0 1 N N N 161.354 166.351 159.586 2.065  -5.705 3.681  H13 GJF 57 
GJF H14 H14 H 0 1 N N N 166.885 167.371 155.486 1.610  5.636  1.471  H14 GJF 58 
GJF H15 H15 H 0 1 N N N 171.093 164.980 160.412 -0.868 -0.899 -2.080 H15 GJF 59 
GJF H16 H16 H 0 1 N N N 170.718 166.407 159.389 0.158  -0.608 -0.656 H16 GJF 60 
GJF H17 H17 H 0 1 N N N 171.169 164.289 158.046 -0.817 1.932  -1.620 H17 GJF 61 
GJF H18 H18 H 0 1 N N N 168.374 165.561 158.063 -0.417 0.539  0.835  H18 GJF 62 
GJF H19 H19 H 0 1 N N N 167.839 164.068 156.287 -2.568 -0.301 1.160  H19 GJF 63 
GJF H20 H20 H 0 1 N N N 169.548 162.894 155.200 -3.976 1.359  2.145  H20 GJF 64 
GJF H21 H21 H 0 1 N N N 169.450 161.964 157.319 -3.916 1.834  -0.488 H21 GJF 65 
GJF H22 H22 H 0 1 N N N 166.578 158.876 155.239 -8.075 1.106  1.826  H22 GJF 66 
GJF H23 H23 H 0 1 N N N 163.053 159.610 157.890 -7.732 -3.554 -0.628 H23 GJF 67 
GJF H24 H24 H 0 1 N N N 163.786 160.200 159.225 -9.075 -3.054 0.248  H24 GJF 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GJF O5  P2  DOUB N N 1  
GJF O10 C18 SING N N 2  
GJF C20 N2  DOUB Y N 3  
GJF C20 N1  SING Y N 4  
GJF P2  S2  SING N N 5  
GJF P2  O9  SING N N 6  
GJF P2  O6  SING N N 7  
GJF N2  C1  SING Y N 8  
GJF N1  C3  DOUB Y N 9  
GJF C18 C17 SING N N 10 
GJF C18 C19 SING N N 11 
GJF O9  C17 SING N N 12 
GJF O6  C9  SING N N 13 
GJF C1  C2  DOUB Y N 14 
GJF C1  N10 SING Y N 15 
GJF C9  C7  SING N N 16 
GJF C17 C16 SING N N 17 
GJF C3  C2  SING Y N 18 
GJF C3  N8  SING N N 19 
GJF C19 N10 SING N N 20 
GJF C19 O8  SING N N 21 
GJF C2  N9  SING Y N 22 
GJF N10 C4  SING Y N 23 
GJF C16 O8  SING N N 24 
GJF C16 C15 SING N N 25 
GJF O1  C7  SING N N 26 
GJF O1  C6  SING N N 27 
GJF C7  C8  SING N N 28 
GJF N9  C4  DOUB Y N 29 
GJF C12 N4  DOUB Y N 30 
GJF C12 N3  SING Y N 31 
GJF N4  C11 SING Y N 32 
GJF C15 O7  SING N N 33 
GJF C8  C5  SING N N 34 
GJF C8  O2  SING N N 35 
GJF N3  C6  SING N N 36 
GJF N3  C10 SING Y N 37 
GJF C6  C5  SING N N 38 
GJF C5  O3  SING N N 39 
GJF O7  P1  SING N N 40 
GJF C11 C10 DOUB Y N 41 
GJF C11 C14 SING Y N 42 
GJF N7  C14 SING N N 43 
GJF C10 N5  SING Y N 44 
GJF C14 N6  DOUB Y N 45 
GJF O3  P1  SING N N 46 
GJF N5  C13 DOUB Y N 47 
GJF P1  O4  DOUB N N 48 
GJF P1  S1  SING N N 49 
GJF N6  C13 SING Y N 50 
GJF C4  H1  SING N N 51 
GJF C5  H2  SING N N 52 
GJF C6  H3  SING N N 53 
GJF C7  H4  SING N N 54 
GJF C8  H5  SING N N 55 
GJF O2  H6  SING N N 56 
GJF S1  H7  SING N N 57 
GJF C9  H8  SING N N 58 
GJF C9  H9  SING N N 59 
GJF C12 H10 SING N N 60 
GJF C13 H11 SING N N 61 
GJF N7  H12 SING N N 62 
GJF N7  H13 SING N N 63 
GJF S2  H14 SING N N 64 
GJF C15 H15 SING N N 65 
GJF C15 H16 SING N N 66 
GJF C16 H17 SING N N 67 
GJF C17 H18 SING N N 68 
GJF C18 H19 SING N N 69 
GJF O10 H20 SING N N 70 
GJF C19 H21 SING N N 71 
GJF C20 H22 SING N N 72 
GJF N8  H23 SING N N 73 
GJF N8  H24 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GJF InChI            InChI                1.03  "InChI=1S/C20H24N10O10P2S2/c21-15-9-17(25-3-23-15)29(5-27-9)19-12(32)13-8(38-19)2-36-42(34,44)40-14-11(31)7(1-35-41(33,43)39-13)37-20(14)30-6-28-10-16(22)24-4-26-18(10)30/h3-8,11-14,19-20,31-32H,1-2H2,(H,33,43)(H,34,44)(H2,21,23,25)(H2,22,24,26)/t7-,8-,11-,12-,13-,14-,19-,20-,41+,42+/m1/s1" 
GJF InChIKey         InChI                1.03  IZJJFUQKKZFVLH-ZPTFDBAZSA-N                                                                                                                                                                                                                                                                         
GJF SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P@@](S)(=O)O[C@@H]5[C@H](O)[C@@H](CO[P@@](S)(=O)O[C@H]4[C@H]3O)O[C@H]5n6cnc7c(N)ncnc67"                                                                                                                                                                          
GJF SMILES           CACTVS               3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](S)(=O)O[CH]5[CH](O)[CH](CO[P](S)(=O)O[CH]4[CH]3O)O[CH]5n6cnc7c(N)ncnc67"                                                                                                                                                                                          
GJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@@](=O)(O[C@@H]5[C@@H]([C@@H](CO[P@@](=O)(O4)S)O[C@H]5n6cnc7c6ncnc7N)O)S)O)N"                                                                                                                                                                    
GJF SMILES           "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(C(COP(=O)(O4)S)OC5n6cnc7c6ncnc7N)O)S)O)N"                                                                                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           GJF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1~{R},3~{S},6~{R},8~{R},9~{R},10~{S},12~{S},15~{R},17~{R},18~{R})-8,17-bis(6-aminopurin-9-yl)-3,12-bis(oxidanylidene)-3,12-bis(sulfanyl)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.2.1.0^{6,10}]octadecane-9,18-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GJF "Create component" 2022-05-15 PDBJ 
GJF "Initial release"  2022-10-05 RCSB 
# 
