data_EJF
# 
_chem_comp.id                                    EJF 
_chem_comp.name                                  "N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene-1-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-1H-indole-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H37 N5 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-01-07 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        511.613 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EJF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6LNQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EJF C10 C1  C 0 1 Y N N N N N -26.499 -10.482 4.687  -6.763  -0.023 -0.976 C10 EJF 1  
EJF C13 C2  C 0 1 Y N N N N N -27.543 -6.809  5.469  -9.687  0.233  1.390  C13 EJF 2  
EJF C15 C3  C 0 1 Y N N N N N -26.321 -7.869  7.223  -7.566  0.565  2.470  C15 EJF 3  
EJF C20 C4  C 0 1 N N N N N N -24.825 -12.035 1.915  -1.363  2.609  -0.960 C20 EJF 4  
EJF C21 C5  C 0 1 N N N N N N -23.821 -14.210 1.140  -0.296  1.480  -2.917 C21 EJF 5  
EJF C24 C6  C 0 1 N N N N N N -25.281 -18.840 6.655  2.388   -3.095 1.094  C24 EJF 6  
EJF C26 C7  C 0 1 N N N N N N -24.899 -17.560 7.380  2.266   -4.611 1.261  C26 EJF 7  
EJF C28 C8  C 0 1 N N S N N N -21.311 -18.966 2.277  5.277   -0.595 -0.702 C28 EJF 8  
EJF C02 C9  C 0 1 N N N N N N -23.397 -18.204 3.418  2.862   -0.902 -0.816 C02 EJF 9  
EJF C03 C10 C 0 1 N N S N N N -24.150 -17.671 4.649  1.524   -1.111 -0.155 C03 EJF 10 
EJF C05 C11 C 0 1 N N N N N N -24.229 -15.321 3.842  -0.695  -0.172 -0.516 C05 EJF 11 
EJF C06 C12 C 0 1 N N S N N N -25.031 -14.103 3.402  -1.838  0.200  -1.425 C06 EJF 12 
EJF C08 C13 C 0 1 N N N N N N -25.210 -12.603 5.724  -4.266  0.080  -1.257 C08 EJF 13 
EJF C09 C14 C 0 1 Y N N N N N -25.787 -11.148 5.657  -5.511  0.147  -0.477 C09 EJF 14 
EJF C11 C15 C 0 1 Y N N N N N -26.775 -9.137  5.204  -7.677  0.118  0.096  C11 EJF 15 
EJF C12 C16 C 0 1 Y N N N N N -27.447 -8.000  4.694  -9.073  0.048  0.185  C12 EJF 16 
EJF C14 C17 C 0 1 Y N N N N N -26.983 -6.760  6.721  -8.939  0.491  2.532  C14 EJF 17 
EJF C16 C18 C 0 1 Y N N N N N -26.220 -9.079  6.437  -6.917  0.380  1.253  C16 EJF 18 
EJF C19 C19 C 0 1 N N N N N N -24.174 -13.347 2.348  -1.561  1.564  -2.060 C19 EJF 19 
EJF C23 C20 C 0 1 N N N N N N -25.146 -18.763 5.149  1.317   -2.602 0.118  C23 EJF 20 
EJF C25 C21 C 0 1 N N N N N N -26.673 -19.360 7.077  2.193   -2.415 2.450  C25 EJF 21 
EJF C29 C22 C 0 1 N N N N N N -20.845 -20.349 2.575  5.889   -1.883 -1.190 C29 EJF 22 
EJF C31 C23 C 0 1 N N N N N N -20.091 -18.064 1.891  6.211   0.060  0.317  C31 EJF 23 
EJF C32 C24 C 0 1 N N S N N N -20.418 -16.646 1.562  5.638   1.415  0.737  C32 EJF 24 
EJF C33 C25 C 0 1 N N N N N N -21.003 -16.555 0.166  5.626   2.392  -0.462 C33 EJF 25 
EJF C34 C26 C 0 1 N N N N N N -20.469 -15.445 -0.400 5.967   3.734  0.222  C34 EJF 26 
EJF C36 C27 C 0 1 N N N N N N -19.068 -15.861 1.465  6.541   2.080  1.752  C36 EJF 27 
EJF N04 N1  N 0 1 N N N N N N -24.927 -16.559 4.219  0.462   -0.624 -1.039 N04 EJF 28 
EJF N07 N2  N 0 1 N N N N N N -24.949 -13.684 4.776  -3.079  0.267  -0.648 N07 EJF 29 
EJF N17 N3  N 0 1 Y N N N N N -25.620 -10.316 6.702  -5.594  0.393  0.880  N17 EJF 30 
EJF N27 N4  N 0 1 N N N N N N -21.951 -18.477 3.479  3.985   -0.877 -0.071 N27 EJF 31 
EJF N35 N5  N 0 1 N N N N N N -19.105 -15.184 0.308  6.714   3.377  1.434  N35 EJF 32 
EJF O01 O1  O 0 1 N N N N N N -23.978 -18.380 2.395  2.928   -0.756 -2.018 O01 EJF 33 
EJF O18 O2  O 0 1 N N N N N N -24.900 -12.912 6.819  -4.308  -0.144 -2.452 O18 EJF 34 
EJF O22 O3  O 0 1 N N N N N N -23.054 -15.262 3.995  -0.817  -0.065 0.686  O22 EJF 35 
EJF O30 O4  O 0 1 N N N N N N -21.036 -21.196 1.809  5.306   -2.928 -1.027 O30 EJF 36 
EJF O37 O5  O 0 1 N N N N N N -18.196 -15.886 2.246  7.036   1.525  2.710  O37 EJF 37 
EJF H1  H1  H 0 1 N N N N N N -26.798 -10.875 3.726  -7.016  -0.226 -2.006 H1  EJF 38 
EJF H2  H2  H 0 1 N N N N N N -28.056 -5.945  5.072  -10.763 0.178  1.457  H2  EJF 39 
EJF H3  H3  H 0 1 N N N N N N -25.878 -7.830  8.207  -6.993  0.766  3.364  H3  EJF 40 
EJF H4  H4  H 0 1 N N N N N N -25.068 -11.435 2.804  -1.165  3.580  -1.413 H4  EJF 41 
EJF H5  H5  H 0 1 N N N N N N -24.129 -11.475 1.274  -2.264  2.669  -0.350 H5  EJF 42 
EJF H6  H6  H 0 1 N N N N N N -25.747 -12.251 1.355  -0.518  2.321  -0.334 H6  EJF 43 
EJF H7  H7  H 0 1 N N N N N N -23.355 -15.146 1.481  -0.398  0.668  -3.637 H7  EJF 44 
EJF H8  H8  H 0 1 N N N N N N -24.736 -14.441 0.575  -0.154  2.421  -3.449 H8  EJF 45 
EJF H9  H9  H 0 1 N N N N N N -23.118 -13.665 0.493  0.565   1.291  -2.276 H9  EJF 46 
EJF H10 H10 H 0 1 N N N N N N -24.563 -19.604 6.987  3.375   -2.851 0.703  H10 EJF 47 
EJF H11 H11 H 0 1 N N N N N N -25.025 -17.700 8.464  1.278   -4.855 1.652  H11 EJF 48 
EJF H12 H12 H 0 1 N N N N N N -23.849 -17.314 7.162  2.404   -5.095 0.295  H12 EJF 49 
EJF H13 H13 H 0 1 N N N N N N -25.546 -16.739 7.039  3.028   -4.962 1.957  H13 EJF 50 
EJF H14 H14 H 0 1 N N N N N N -22.023 -18.982 1.439  5.129   0.080  -1.546 H14 EJF 51 
EJF H15 H15 H 0 1 N N N N N N -23.444 -17.404 5.449  1.494   -0.562 0.786  H15 EJF 52 
EJF H16 H16 H 0 1 N N N N N N -26.043 -14.345 3.045  -1.940  -0.551 -2.207 H16 EJF 53 
EJF H17 H17 H 0 1 N N N N N N -27.890 -8.036  3.710  -9.663  -0.153 -0.697 H17 EJF 54 
EJF H18 H18 H 0 1 N N N N N N -27.058 -5.860  7.313  -9.440  0.635  3.478  H18 EJF 55 
EJF H19 H19 H 0 1 N N N N N N -23.227 -13.086 2.842  -2.406  1.852  -2.687 H19 EJF 56 
EJF H20 H20 H 0 1 N N N N N N -26.137 -18.545 4.725  1.395   -3.157 -0.817 H20 EJF 57 
EJF H21 H21 H 0 1 N N N N N N -24.798 -19.740 4.784  0.330   -2.758 0.552  H21 EJF 58 
EJF H22 H22 H 0 1 N N N N N N -26.732 -19.402 8.175  1.233   -2.714 2.872  H22 EJF 59 
EJF H23 H23 H 0 1 N N N N N N -27.449 -18.682 6.694  2.995   -2.713 3.125  H23 EJF 60 
EJF H24 H24 H 0 1 N N N N N N -26.829 -20.367 6.663  2.211   -1.332 2.320  H24 EJF 61 
EJF H25 H25 H 0 1 N N N N N N -20.331 -20.561 3.501  6.849   -1.871 -1.686 H25 EJF 62 
EJF H26 H26 H 0 1 N N N N N N -19.603 -18.512 1.013  6.301   -0.583 1.192  H26 EJF 63 
EJF H27 H27 H 0 1 N N N N N N -19.390 -18.062 2.738  7.194   0.204  -0.131 H27 EJF 64 
EJF H28 H28 H 0 1 N N N N N N -21.084 -16.192 2.311  4.633   1.295  1.141  H28 EJF 65 
EJF H29 H29 H 0 1 N N N N N N -22.098 -16.467 0.217  6.387   2.122  -1.193 H29 EJF 66 
EJF H30 H30 H 0 1 N N N N N N -20.734 -17.447 -0.418 4.639   2.429  -0.924 H30 EJF 67 
EJF H31 H31 H 0 1 N N N N N N -20.311 -15.608 -1.476 6.585   4.346  -0.435 H31 EJF 68 
EJF H32 H32 H 0 1 N N N N N N -21.141 -14.586 -0.254 5.053   4.267  0.486  H32 EJF 69 
EJF H33 H33 H 0 1 N N N N N N -25.924 -16.618 4.174  0.591   -0.628 -2.000 H33 EJF 70 
EJF H34 H34 H 0 1 N N N N N N -24.551 -14.442 5.293  -3.045  0.445  0.305  H34 EJF 71 
EJF H35 H35 H 0 1 N N N N N N -25.137 -10.548 7.546  -4.842  0.550  1.472  H35 EJF 72 
EJF H36 H36 H 0 1 N N N N N N -21.431 -18.330 4.320  3.938   -1.045 0.883  H36 EJF 73 
EJF H37 H37 H 0 1 N N N N N N -18.372 -14.603 -0.045 7.261   3.996  1.942  H37 EJF 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EJF C34 C33 SING N N 1  
EJF C34 N35 SING N N 2  
EJF C33 C32 SING N N 3  
EJF N35 C36 SING N N 4  
EJF C21 C19 SING N N 5  
EJF C36 C32 SING N N 6  
EJF C36 O37 DOUB N N 7  
EJF C32 C31 SING N N 8  
EJF O30 C29 DOUB N N 9  
EJF C31 C28 SING N N 10 
EJF C20 C19 SING N N 11 
EJF C28 C29 SING N N 12 
EJF C28 N27 SING N N 13 
EJF C19 C06 SING N N 14 
EJF O01 C02 DOUB N N 15 
EJF C06 C05 SING N N 16 
EJF C06 N07 SING N N 17 
EJF C02 N27 SING N N 18 
EJF C02 C03 SING N N 19 
EJF C05 O22 DOUB N N 20 
EJF C05 N04 SING N N 21 
EJF N04 C03 SING N N 22 
EJF C03 C23 SING N N 23 
EJF C10 C11 SING Y N 24 
EJF C10 C09 DOUB Y N 25 
EJF C12 C11 DOUB Y N 26 
EJF C12 C13 SING Y N 27 
EJF N07 C08 SING N N 28 
EJF C23 C24 SING N N 29 
EJF C11 C16 SING Y N 30 
EJF C13 C14 DOUB Y N 31 
EJF C09 C08 SING N N 32 
EJF C09 N17 SING Y N 33 
EJF C08 O18 DOUB N N 34 
EJF C16 N17 SING Y N 35 
EJF C16 C15 DOUB Y N 36 
EJF C24 C25 SING N N 37 
EJF C24 C26 SING N N 38 
EJF C14 C15 SING Y N 39 
EJF C10 H1  SING N N 40 
EJF C13 H2  SING N N 41 
EJF C15 H3  SING N N 42 
EJF C20 H4  SING N N 43 
EJF C20 H5  SING N N 44 
EJF C20 H6  SING N N 45 
EJF C21 H7  SING N N 46 
EJF C21 H8  SING N N 47 
EJF C21 H9  SING N N 48 
EJF C24 H10 SING N N 49 
EJF C26 H11 SING N N 50 
EJF C26 H12 SING N N 51 
EJF C26 H13 SING N N 52 
EJF C28 H14 SING N N 53 
EJF C03 H15 SING N N 54 
EJF C06 H16 SING N N 55 
EJF C12 H17 SING N N 56 
EJF C14 H18 SING N N 57 
EJF C19 H19 SING N N 58 
EJF C23 H20 SING N N 59 
EJF C23 H21 SING N N 60 
EJF C25 H22 SING N N 61 
EJF C25 H23 SING N N 62 
EJF C25 H24 SING N N 63 
EJF C29 H25 SING N N 64 
EJF C31 H26 SING N N 65 
EJF C31 H27 SING N N 66 
EJF C32 H28 SING N N 67 
EJF C33 H29 SING N N 68 
EJF C33 H30 SING N N 69 
EJF C34 H31 SING N N 70 
EJF C34 H32 SING N N 71 
EJF N04 H33 SING N N 72 
EJF N07 H34 SING N N 73 
EJF N17 H35 SING N N 74 
EJF N27 H36 SING N N 75 
EJF N35 H37 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EJF InChI            InChI                1.03  "InChI=1S/C27H37N5O5/c1-15(2)11-21(25(35)29-19(14-33)12-18-9-10-28-24(18)34)31-27(37)23(16(3)4)32-26(36)22-13-17-7-5-6-8-20(17)30-22/h5-8,13-16,18-19,21,23,30H,9-12H2,1-4H3,(H,28,34)(H,29,35)(H,31,37)(H,32,36)/t18-,19-,21-,23-/m0/s1" 
EJF InChIKey         InChI                1.03  BRIFXLOFHLLUBS-YDWJEQILSA-N                                                                                                                                                                                                               
EJF SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)c1[nH]c2ccccc2c1)C(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=O"                                                                                                                                                  
EJF SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)[CH](NC(=O)c1[nH]c2ccccc2c1)C(C)C)C(=O)N[CH](C[CH]3CCNC3=O)C=O"                                                                                                                                                         
EJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=O)NC(=O)[C@H](C(C)C)NC(=O)c2cc3ccccc3[nH]2"                                                                                                                                                  
EJF SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=O)NC(=O)C(C(C)C)NC(=O)c2cc3ccccc3[nH]2"                                                                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           EJF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-1~{H}-indole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EJF "Create component" 2020-01-07 PDBJ 
EJF "Initial release"  2020-05-27 RCSB 
EJF "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            EJF 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C29 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
