data_DJF
# 
_chem_comp.id                                    DJF 
_chem_comp.name                                  
;[(1S,5R,6R,8R)-6-(6-aminopurin-9-yl)-2'-(3-oxidanylpropoxy)spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,9'-8-oxa-9-boranuidabicyclo[4.3.0]nona-1(6),2,4-triene]-8-yl]methyl dihydrogen phosphate
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C20 H24 B N5 O10 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     2013-01-21 
_chem_comp.pdbx_modified_date                    2013-04-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        536.217 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DJF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ZJU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DJF B      B      B -1 1 N N N 28.626 27.843 33.223 0.974  1.593  -1.751 B      DJF 1  
DJF P      P      P 0  1 N N N 22.015 27.555 32.409 -5.732 0.698  0.671  P      DJF 2  
DJF N1     N1     N 0  1 Y N N 24.256 34.361 29.269 3.304  -4.978 0.010  N1     DJF 3  
DJF O1     O1     O 0  1 N N N 29.594 28.561 34.165 1.095  1.616  -3.116 O1     DJF 4  
DJF C2     C2     C 0  1 Y N N 24.836 33.363 28.563 3.457  -3.688 0.249  C2     DJF 5  
DJF N3     N3     N 0  1 Y N N 25.340 32.281 29.170 2.461  -2.831 0.166  N3     DJF 6  
DJF C4     C4     C 0  1 Y N N 25.269 32.145 30.527 1.241  -3.240 -0.168 C4     DJF 7  
DJF C5     C5     C 0  1 Y N N 24.641 33.136 31.253 1.026  -4.603 -0.432 C5     DJF 8  
DJF C6     C6     C 0  1 Y N N 24.143 34.272 30.604 2.121  -5.479 -0.330 C6     DJF 9  
DJF N6     N6     N 0  1 N N N 23.522 35.281 31.283 1.970  -6.832 -0.579 N6     DJF 10 
DJF N7     N7     N 0  1 Y N N 24.695 32.762 32.530 -0.284 -4.748 -0.742 N7     DJF 11 
DJF C8     C8     C 0  1 Y N N 25.334 31.563 32.617 -0.873 -3.589 -0.687 C8     DJF 12 
DJF N9     N9     N 0  1 Y N N 25.663 31.174 31.389 0.026  -2.626 -0.337 N9     DJF 13 
DJF "C1'"  "C1'"  C 0  1 N N R 26.469 29.969 31.087 -0.254 -1.198 -0.170 "C1'"  DJF 14 
DJF C10    C10    C 0  1 N N N 30.882 27.916 34.249 1.508  2.952  -3.455 C10    DJF 15 
DJF C11    C11    C 0  1 Y N N 30.688 26.696 33.371 2.286  3.475  -2.270 C11    DJF 16 
DJF C12    C12    C 0  1 Y N N 29.434 26.645 32.797 1.969  2.652  -1.199 C12    DJF 17 
DJF C13    C13    C 0  1 Y N N 31.649 25.695 33.172 3.165  4.523  -2.101 C13    DJF 18 
DJF C14    C14    C 0  1 Y N N 31.322 24.596 32.366 3.729  4.758  -0.859 C14    DJF 19 
DJF C15    C15    C 0  1 Y N N 30.050 24.523 31.778 3.413  3.944  0.212  C15    DJF 20 
DJF C16    C16    C 0  1 Y N N 29.082 25.537 32.004 2.529  2.886  0.043  C16    DJF 21 
DJF O17    O17    O 0  1 N N N 27.860 25.383 31.397 2.216  2.084  1.094  O17    DJF 22 
DJF C18    C18    C 0  1 N N N 27.758 24.331 30.417 2.834  2.386  2.347  C18    DJF 23 
DJF C19    C19    C 0  1 N N N 26.312 23.985 30.100 2.364  1.384  3.403  C19    DJF 24 
DJF "C2'"  "C2'"  C 0  1 N N R 27.178 29.581 32.379 0.070  -0.432 -1.471 "C2'"  DJF 25 
DJF "O2'"  "O2'"  O 0  1 N N N 28.395 28.912 32.138 1.270  0.345  -1.262 "O2'"  DJF 26 
DJF C20    C20    C 0  1 N N N 25.690 25.052 29.206 3.025  1.708  4.744  C20    DJF 27 
DJF O21    O21    O 0  1 N N N 24.293 25.117 29.506 2.586  0.771  5.730  O21    DJF 28 
DJF "C3'"  "C3'"  C 0  1 N N S 26.392 28.443 32.964 -1.044 0.653  -1.551 "C3'"  DJF 29 
DJF "O3'"  "O3'"  O 0  1 N N N 27.363 27.626 33.607 -0.312 1.887  -1.375 "O3'"  DJF 30 
DJF "C4'"  "C4'"  C 0  1 N N R 25.875 27.803 31.679 -1.895 0.401  -0.288 "C4'"  DJF 31 
DJF "O4'"  "O4'"  O 0  1 N N N 25.707 28.849 30.706 -1.665 -0.985 0.045  "O4'"  DJF 32 
DJF "C5'"  "C5'"  C 0  1 N N N 24.543 27.099 31.870 -3.377 0.637  -0.589 "C5'"  DJF 33 
DJF "O5'"  "O5'"  O 0  1 N N N 23.529 28.049 32.187 -4.134 0.512  0.616  "O5'"  DJF 34 
DJF OP1    OP1    O 0  1 N N N 21.686 27.876 33.840 -6.229 0.619  2.201  OP1    DJF 35 
DJF OP2    OP2    O 0  1 N N N 21.759 26.173 31.883 -6.095 2.015  0.102  OP2    DJF 36 
DJF H2     H2     H 0  1 N N N 24.894 33.441 27.487 4.436  -3.323 0.522  H2     DJF 37 
DJF HN6    HN6    H 0  1 N N N 23.224 35.984 30.637 2.733  -7.427 -0.506 HN6    DJF 38 
DJF HN6A   HN6A   H 0  0 N N N 22.728 34.916 31.769 1.101  -7.186 -0.827 HN6A   DJF 39 
DJF H8     H8     H 0  1 N N N 25.539 31.020 33.528 -1.919 -3.415 -0.890 H8     DJF 40 
DJF "H1'"  "H1'"  H 0  1 N N N 27.221 30.208 30.321 0.323  -0.793 0.661  "H1'"  DJF 41 
DJF H10    H10    H 0  1 N N N 31.679 28.565 33.859 2.143  2.934  -4.340 H10    DJF 42 
DJF H10A   H10A   H 0  0 N N N 31.117 27.629 35.284 0.635  3.579  -3.634 H10A   DJF 43 
DJF H13    H13    H 0  1 N N N 32.624 25.769 33.631 3.413  5.160  -2.936 H13    DJF 44 
DJF H14    H14    H 0  1 N N N 32.044 23.811 32.199 4.417  5.579  -0.727 H14    DJF 45 
DJF H15    H15    H 0  1 N N N 29.804 23.684 31.145 3.853  4.130  1.180  H15    DJF 46 
DJF H18    H18    H 0  1 N N N 28.256 24.658 29.492 3.917  2.323  2.243  H18    DJF 47 
DJF H18A   H18A   H 0  0 N N N 28.261 23.433 30.806 2.557  3.395  2.655  H18A   DJF 48 
DJF H19    H19    H 0  1 N N N 26.277 23.015 29.583 1.280  1.447  3.507  H19    DJF 49 
DJF H19A   H19A   H 0  0 N N N 25.741 23.921 31.038 2.641  0.375  3.095  H19A   DJF 50 
DJF "H2'"  "H2'"  H 0  1 N N N 27.265 30.430 33.073 0.125  -1.079 -2.347 "H2'"  DJF 51 
DJF H20    H20    H 0  1 N N N 26.161 26.026 29.404 4.108  1.644  4.640  H20    DJF 52 
DJF H20A   H20A   H 0  0 N N N 25.833 24.784 28.149 2.748  2.716  5.052  H20A   DJF 53 
DJF HO21   HO21   H 0  0 N N N 23.882 25.777 28.960 2.966  0.916  6.607  HO21   DJF 54 
DJF "H3'"  "H3'"  H 0  1 N N N 25.578 28.780 33.623 -1.614 0.621  -2.479 "H3'"  DJF 55 
DJF "H4'"  "H4'"  H 0  1 N N N 26.617 27.073 31.323 -1.566 1.046  0.526  "H4'"  DJF 56 
DJF "H5'"  "H5'"  H 0  1 N N N 24.272 26.574 30.942 -3.509 1.638  -1.000 "H5'"  DJF 57 
DJF "H5'A" "H5'A" H 0  0 N N N 24.630 26.372 32.691 -3.722 -0.101 -1.313 "H5'A" DJF 58 
DJF HOP1   HOP1   H 0  0 N N N 21.330 27.104 34.264 -7.184 0.723  2.309  HOP1   DJF 59 
DJF OP3    OP3    O 0  1 N Y N ?      ?      ?      -6.438 -0.469 -0.184 OP3    DJF 60 
DJF HOP3   HOP3   H 0  0 N N N ?      ?      ?      -6.243 -1.362 0.133  HOP3   DJF 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DJF B     O1     SING N N 1  
DJF B     C12    SING N N 2  
DJF B     "O2'"  SING N N 3  
DJF B     "O3'"  SING N N 4  
DJF P     "O5'"  SING N N 5  
DJF P     OP1    SING N N 6  
DJF P     OP2    DOUB N N 7  
DJF N1    C2     DOUB Y N 8  
DJF N1    C6     SING Y N 9  
DJF O1    C10    SING N N 10 
DJF C2    N3     SING Y N 11 
DJF N3    C4     DOUB Y N 12 
DJF C4    C5     SING Y N 13 
DJF C4    N9     SING Y N 14 
DJF C5    C6     DOUB Y N 15 
DJF C5    N7     SING Y N 16 
DJF C6    N6     SING N N 17 
DJF N7    C8     DOUB Y N 18 
DJF C8    N9     SING Y N 19 
DJF N9    "C1'"  SING N N 20 
DJF "C1'" "C2'"  SING N N 21 
DJF "C1'" "O4'"  SING N N 22 
DJF C10   C11    SING N N 23 
DJF C11   C12    DOUB Y N 24 
DJF C11   C13    SING Y N 25 
DJF C12   C16    SING Y N 26 
DJF C13   C14    DOUB Y N 27 
DJF C14   C15    SING Y N 28 
DJF C15   C16    DOUB Y N 29 
DJF C16   O17    SING N N 30 
DJF O17   C18    SING N N 31 
DJF C18   C19    SING N N 32 
DJF C19   C20    SING N N 33 
DJF "C2'" "O2'"  SING N N 34 
DJF "C2'" "C3'"  SING N N 35 
DJF C20   O21    SING N N 36 
DJF "C3'" "O3'"  SING N N 37 
DJF "C3'" "C4'"  SING N N 38 
DJF "C4'" "O4'"  SING N N 39 
DJF "C4'" "C5'"  SING N N 40 
DJF "C5'" "O5'"  SING N N 41 
DJF C2    H2     SING N N 42 
DJF N6    HN6    SING N N 43 
DJF N6    HN6A   SING N N 44 
DJF C8    H8     SING N N 45 
DJF "C1'" "H1'"  SING N N 46 
DJF C10   H10    SING N N 47 
DJF C10   H10A   SING N N 48 
DJF C13   H13    SING N N 49 
DJF C14   H14    SING N N 50 
DJF C15   H15    SING N N 51 
DJF C18   H18    SING N N 52 
DJF C18   H18A   SING N N 53 
DJF C19   H19    SING N N 54 
DJF C19   H19A   SING N N 55 
DJF "C2'" "H2'"  SING N N 56 
DJF C20   H20    SING N N 57 
DJF C20   H20A   SING N N 58 
DJF O21   HO21   SING N N 59 
DJF "C3'" "H3'"  SING N N 60 
DJF "C4'" "H4'"  SING N N 61 
DJF "C5'" "H5'"  SING N N 62 
DJF "C5'" "H5'A" SING N N 63 
DJF HOP1  OP1    SING N N 64 
DJF P     OP3    SING N N 65 
DJF HOP3  OP3    SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DJF InChI            InChI                1.03  
"InChI=1S/C20H22BN5O9P/c22-18-15-19(24-9-23-18)26(10-25-15)20-17-16(13(33-20)8-32-36(28)29)34-21(35-17)14-11(7-31-21)3-1-4-12(14)30-6-2-5-27/h1,3-4,9-10,13,16-17,20,27H,2,5-8H2,(H2,22,23,24)/q-1/t13-,16-,17-,20-,21+/m1/s1" 
DJF InChIKey         InChI                1.03  QAJGLUMMRUEBOV-PGBNIQHZSA-N 
DJF SMILES_CANONICAL CACTVS               3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@H]4O[B-]5(OCc6cccc(OCCCO)c56)O[C@@H]34" 
DJF SMILES           CACTVS               3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH]4O[B-]5(OCc6cccc(OCCCO)c56)O[CH]34" 
DJF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[B-]12(c3c(cccc3OCCCO)CO1)O[C@@H]4[C@H](O[C@H]([C@@H]4O2)n5cnc6c5ncnc6N)COP(=O)(O)O" 
DJF SMILES           "OpenEye OEToolkits" 1.7.6 "[B-]12(c3c(cccc3OCCCO)CO1)OC4C(OC(C4O2)n5cnc6c5ncnc6N)COP(=O)(O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DJF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 
;[(1S,5R,6R,8R)-6-(6-aminopurin-9-yl)-2'-(3-oxidanylpropoxy)spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,9'-8-oxa-9-boranuidabicyclo[4.3.0]nona-1(6),2,4-triene]-8-yl]methyl dihydrogen phosphate
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DJF "Create component" 2013-01-21 EBI  
DJF "Initial release"  2013-04-17 RCSB 
# 
