data_D9F
#

_chem_comp.id                                   D9F
_chem_comp.name                                 "(3~{Z},5~{E},8~{S},9~{E},11~{E},14~{S},16~{R},17~{Z},19~{E},24~{R})-24-methyl-8,14,16-tris(oxidanyl)-1-oxacyclotetracosa-3,5,9,11,17,19-hexaen-2-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H34 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-24
_chem_comp.pdbx_modified_date                   2020-07-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       402.524
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D9F
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6KJP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D9F  C02  C1   C  0  1  N  N  N  10.842  82.864  106.019   3.849  -0.395  -0.363  C02  D9F   1  
D9F  C03  C2   C  0  1  N  N  N   9.393  83.363  105.946   4.634   0.644  -0.913  C03  D9F   2  
D9F  C04  C3   C  0  1  N  N  N   8.935  84.536  106.349   4.381   1.951  -0.724  C04  D9F   3  
D9F  C05  C4   C  0  1  N  N  N   9.786  85.631  106.989   3.276   2.447   0.090  C05  D9F   4  
D9F  C06  C5   C  0  1  N  N  N   9.482  86.892  106.769   3.051   3.765   0.144  C06  D9F   5  
D9F  C07  C6   C  0  1  N  N  N  10.319  87.999  107.401   1.920   4.308   0.976  C07  D9F   6  
D9F  C08  C7   C  0  1  N  N  S   9.947  89.320  106.741   0.766   4.724   0.061  C08  D9F   7  
D9F  C10  C8   C  0  1  N  N  N  10.621  89.407  105.375  -0.518   4.111   0.558  C10  D9F   8  
D9F  C11  C9   C  0  1  N  N  N  10.302  90.390  104.560  -1.376   3.570  -0.300  C11  D9F   9  
D9F  C12  C10  C  0  1  N  N  N  10.957  90.504  103.185  -2.621   2.954   0.190  C12  D9F  10  
D9F  C13  C11  C  0  1  N  N  N  12.267  90.454  103.054  -3.472   2.404  -0.669  C13  D9F  11  
D9F  C14  C12  C  0  1  N  N  N  12.885  90.575  101.662  -4.749   1.770  -0.181  C14  D9F  12  
D9F  C15  C13  C  0  1  N  N  S  14.349  90.137  101.683  -4.770   0.291  -0.572  C15  D9F  13  
D9F  C17  C14  C  0  1  N  N  N  14.550  89.072  100.604  -4.449  -0.575   0.648  C17  D9F  14  
D9F  C18  C15  C  0  1  N  N  R  15.999  88.724  100.232  -3.334  -1.561   0.291  C18  D9F  15  
D9F  C20  C16  C  0  1  N  N  N  16.997  88.787  101.395  -3.690  -2.938   0.780  C20  D9F  16  
D9F  C21  C17  C  0  1  N  N  N  17.002  87.961  102.424  -2.868  -3.965   0.611  C21  D9F  17  
D9F  C22  C18  C  0  1  N  N  N  15.966  86.856  102.601  -1.570  -3.827  -0.065  C22  D9F  18  
D9F  C23  C19  C  0  1  N  N  N  15.116  86.953  103.601  -0.737  -4.863  -0.122  C23  D9F  19  
D9F  C24  C20  C  0  1  N  N  N  14.057  85.874  103.801   0.605  -4.735  -0.793  C24  D9F  20  
D9F  C25  C21  C  0  1  N  N  N  14.665  84.623  104.426   1.367  -3.550  -0.199  C25  D9F  21  
D9F  C26  C22  C  0  1  N  N  N  14.163  84.417  105.852   2.860  -3.681  -0.509  C26  D9F  22  
D9F  C27  C23  C  0  1  N  N  R  13.207  83.236  106.018   3.633  -2.651   0.319  C27  D9F  23  
D9F  C28  C24  C  0  1  N  N  N  13.742  82.393  107.173   4.723  -3.356   1.127  C28  D9F  24  
D9F  O01  O1   O  0  1  N  N  N  11.035  81.714  105.805   2.834  -0.165   0.264  O01  D9F  25  
D9F  O09  O2   O  0  1  N  N  N   8.559  89.369  106.569   0.648   6.149   0.067  O09  D9F  26  
D9F  O16  O3   O  0  1  N  N  N  15.166  91.244  101.428  -6.067  -0.051  -1.070  O16  D9F  27  
D9F  O19  O4   O  0  1  N  N  N  16.436  89.609   99.237  -2.115  -1.138   0.908  O19  D9F  28  
D9F  O29  O5   O  0  1  N  N  N  11.921  83.712  106.324   4.227  -1.682  -0.548  O29  D9F  29  
D9F  H1   H1   H  0  1  N  N  N   8.670  82.683  105.520   5.492   0.366  -1.529  H1   D9F  30  
D9F  H2   H2   H  0  1  N  N  N   7.882  84.734  106.216   5.035   2.681  -1.201  H2   D9F  31  
D9F  H3   H3   H  0  1  N  N  N  10.628  85.373  107.615   2.638   1.781   0.642  H3   D9F  32  
D9F  H4   H4   H  0  1  N  N  N   8.640  87.143  106.141   3.685   4.439  -0.415  H4   D9F  33  
D9F  H5   H5   H  0  1  N  N  N  11.388  87.793  107.243   1.578   3.547   1.675  H5   D9F  34  
D9F  H6   H6   H  0  1  N  N  N  10.112  88.052  108.480   2.269   5.181   1.533  H6   D9F  35  
D9F  H7   H7   H  0  1  N  N  N  10.296  90.151  107.371   0.968   4.382  -0.954  H7   D9F  36  
D9F  H8   H8   H  0  1  N  N  N  11.353  88.669  105.080  -0.743   4.116   1.614  H8   D9F  37  
D9F  H9   H9   H  0  1  N  N  N   9.570  91.123  104.866  -1.160   3.575  -1.357  H9   D9F  38  
D9F  H10  H10  H  0  1  N  N  N  10.338  90.627  102.309  -2.836   2.944   1.248  H10  D9F  39  
D9F  H11  H11  H  0  1  N  N  N  12.898  90.329  103.922  -3.245   2.413  -1.725  H11  D9F  40  
D9F  H12  H12  H  0  1  N  N  N  12.826  91.622  101.330  -4.813   1.863   0.900  H12  D9F  41  
D9F  H13  H13  H  0  1  N  N  N  12.327  89.936  100.962  -5.600   2.277  -0.641  H13  D9F  42  
D9F  H14  H14  H  0  1  N  N  N  14.578  89.699  102.666  -4.026   0.112  -1.347  H14  D9F  43  
D9F  H15  H15  H  0  1  N  N  N  14.048  89.425   99.691  -4.123   0.060   1.472  H15  D9F  44  
D9F  H16  H16  H  0  1  N  N  N  14.066  88.148  100.954  -5.345  -1.120   0.946  H16  D9F  45  
D9F  H17  H17  H  0  1  N  N  N  16.006  87.697   99.839  -3.202  -1.580  -0.795  H17  D9F  46  
D9F  H18  H18  H  0  1  N  N  N  17.749  89.562  101.370  -4.636  -3.095   1.291  H18  D9F  47  
D9F  H19  H19  H  0  1  N  N  N  17.772  88.072  103.173  -3.168  -4.941   0.981  H19  D9F  48  
D9F  H20  H20  H  0  1  N  N  N  15.931  86.016  101.923  -1.289  -2.892  -0.524  H20  D9F  49  
D9F  H21  H21  H  0  1  N  N  N  15.168  87.793  104.277  -1.029  -5.807   0.317  H21  D9F  50  
D9F  H22  H22  H  0  1  N  N  N  13.269  86.261  104.464   1.176  -5.651  -0.634  H22  D9F  51  
D9F  H23  H23  H  0  1  N  N  N  13.620  85.613  102.826   0.470  -4.581  -1.863  H23  D9F  52  
D9F  H24  H24  H  0  1  N  N  N  14.389  83.748  103.819   0.991  -2.623  -0.636  H24  D9F  53  
D9F  H25  H25  H  0  1  N  N  N  15.760  84.727  104.443   1.222  -3.529   0.882  H25  D9F  54  
D9F  H26  H26  H  0  1  N  N  N  15.034  84.249  106.503   3.202  -4.683  -0.249  H26  D9F  55  
D9F  H27  H27  H  0  1  N  N  N  13.639  85.331  106.168   3.030  -3.503  -1.570  H27  D9F  56  
D9F  H28  H28  H  0  1  N  N  N  13.202  82.636  105.096   2.946  -2.152   1.004  H28  D9F  57  
D9F  H29  H29  H  0  1  N  N  N  13.083  81.526  107.331   5.409  -3.863   0.447  H29  D9F  58  
D9F  H30  H30  H  0  1  N  N  N  14.757  82.043  106.932   5.272  -2.621   1.715  H30  D9F  59  
D9F  H31  H31  H  0  1  N  N  N  13.772  83.002  108.088   4.266  -4.087   1.793  H31  D9F  60  
D9F  H32  H32  H  0  1  N  N  N   8.132  89.315  107.416  -0.065   6.487  -0.492  H32  D9F  61  
D9F  H33  H33  H  0  1  N  N  N  15.033  91.899  102.104  -6.334   0.455  -1.850  H33  D9F  62  
D9F  H34  H34  H  0  1  N  N  N  17.332  89.402   99.000  -1.362  -1.716   0.726  H34  D9F  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D9F  O19  C18  SING  N  N   1  
D9F  C18  C17  SING  N  N   2  
D9F  C18  C20  SING  N  N   3  
D9F  C17  C15  SING  N  N   4  
D9F  C20  C21  DOUB  N  Z   5  
D9F  O16  C15  SING  N  N   6  
D9F  C14  C15  SING  N  N   7  
D9F  C14  C13  SING  N  N   8  
D9F  C21  C22  SING  N  N   9  
D9F  C22  C23  DOUB  N  E  10  
D9F  C13  C12  DOUB  N  E  11  
D9F  C12  C11  SING  N  N  12  
D9F  C23  C24  SING  N  N  13  
D9F  C24  C25  SING  N  N  14  
D9F  C25  C26  SING  N  N  15  
D9F  C11  C10  DOUB  N  E  16  
D9F  C10  C08  SING  N  N  17  
D9F  O01  C02  DOUB  N  N  18  
D9F  C26  C27  SING  N  N  19  
D9F  C03  C02  SING  N  N  20  
D9F  C03  C04  DOUB  N  Z  21  
D9F  C27  O29  SING  N  N  22  
D9F  C27  C28  SING  N  N  23  
D9F  C02  O29  SING  N  N  24  
D9F  C04  C05  SING  N  N  25  
D9F  O09  C08  SING  N  N  26  
D9F  C08  C07  SING  N  N  27  
D9F  C06  C05  DOUB  N  E  28  
D9F  C06  C07  SING  N  N  29  
D9F  C03  H1   SING  N  N  30  
D9F  C04  H2   SING  N  N  31  
D9F  C05  H3   SING  N  N  32  
D9F  C06  H4   SING  N  N  33  
D9F  C07  H5   SING  N  N  34  
D9F  C07  H6   SING  N  N  35  
D9F  C08  H7   SING  N  N  36  
D9F  C10  H8   SING  N  N  37  
D9F  C11  H9   SING  N  N  38  
D9F  C12  H10  SING  N  N  39  
D9F  C13  H11  SING  N  N  40  
D9F  C14  H12  SING  N  N  41  
D9F  C14  H13  SING  N  N  42  
D9F  C15  H14  SING  N  N  43  
D9F  C17  H15  SING  N  N  44  
D9F  C17  H16  SING  N  N  45  
D9F  C18  H17  SING  N  N  46  
D9F  C20  H18  SING  N  N  47  
D9F  C21  H19  SING  N  N  48  
D9F  C22  H20  SING  N  N  49  
D9F  C23  H21  SING  N  N  50  
D9F  C24  H22  SING  N  N  51  
D9F  C24  H23  SING  N  N  52  
D9F  C25  H24  SING  N  N  53  
D9F  C25  H25  SING  N  N  54  
D9F  C26  H26  SING  N  N  55  
D9F  C26  H27  SING  N  N  56  
D9F  C27  H28  SING  N  N  57  
D9F  C28  H29  SING  N  N  58  
D9F  C28  H30  SING  N  N  59  
D9F  C28  H31  SING  N  N  60  
D9F  O09  H32  SING  N  N  61  
D9F  O16  H33  SING  N  N  62  
D9F  O19  H34  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D9F  InChI             InChI                 1.03   "InChI=1S/C24H34O5/c1-20-13-7-3-2-4-8-16-22(26)19-23(27)17-11-5-9-14-21(25)15-10-6-12-18-24(28)29-20/h2,4-6,8-12,14,16,18,20-23,25-27H,3,7,13,15,17,19H2,1H3/b4-2+,10-6+,11-5+,14-9+,16-8-,18-12-/t20-,21-,22+,23+/m1/s1"  
D9F  InChIKey          InChI                 1.03   XXDIJWSZFWZBRM-LZAGWGSOSA-N  
D9F  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1CCC\C=C\C=C/[C@H](O)C[C@@H](O)C\C=C\C=C\[C@@H](O)C\C=C\C=C/C(=O)O1"  
D9F  SMILES            CACTVS                3.385  "C[CH]1CCCC=CC=C[CH](O)C[CH](O)CC=CC=C[CH](O)CC=CC=CC(=O)O1"  
D9F  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1CCC/C=C/C=C\[C@@H](C[C@H](C/C=C/C=C/[C@H](C/C=C/C=C\C(=O)O1)O)O)O"  
D9F  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CCCC=CC=CC(CC(CC=CC=CC(CC=CC=CC(=O)O1)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          D9F
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(3~{Z},5~{E},8~{S},9~{E},11~{E},14~{S},16~{R},17~{Z},19~{E},24~{R})-24-methyl-8,14,16-tris(oxidanyl)-1-oxacyclotetracosa-3,5,9,11,17,19-hexaen-2-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D9F  "Create component"  2019-07-24  PDBJ  
D9F  "Initial release"   2020-07-29  RCSB  
##
