data_A5F
#

_chem_comp.id                                   A5F
_chem_comp.name                                 
;N-[(2S)-3-azanyl-3-methyl-1-(oxidanylamino)-1-oxidanylidene-butan-2-yl]-4-[4-[(1R,2R)-2-(hydroxymethyl)cyclopropyl]buta
-1,3-diynyl]benzamide
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H23 N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ACHN-975
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-10-02
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       369.414
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    A5F
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6IH0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A5F  C10  C1   C  0  1  N  N  N  -19.790  -3.941   8.692   -8.617   0.775  -1.564  C10  A5F   1  
A5F  C8   C2   C  0  1  N  N  R  -19.963  -2.635   7.911   -8.819   0.755  -0.047  C8   A5F   2  
A5F  C9   C3   C  0  1  N  N  R  -21.067  -3.113   8.850   -8.061  -0.384  -0.733  C9   A5F   3  
A5F  C11  C4   C  0  1  N  N  N  -20.282  -2.778   6.409  -10.226   0.454   0.474  C11  A5F   4  
A5F  C12  C5   C  0  1  N  N  N  -21.163  -2.311  10.146   -6.603  -0.444  -0.540  C12  A5F   5  
A5F  C13  C6   C  0  1  N  N  N  -19.540   7.031  18.076    5.565  -0.863  -0.714  C13  A5F   6  
A5F  C14  C7   C  0  1  N  N  S  -20.827   6.233  18.381    4.948   0.056   0.342  C14  A5F   7  
A5F  C15  C8   C  0  1  N  N  N  -21.229  -1.675  11.139   -5.441  -0.492  -0.386  C15  A5F   8  
A5F  C16  C9   C  0  1  N  N  N  -19.512   8.299  18.962    5.078  -2.296  -0.489  C16  A5F   9  
A5F  C17  C10  C  0  1  N  N  N  -19.459   7.454  16.593    5.143  -0.394  -2.108  C17  A5F  10  
A5F  C18  C11  C  0  1  N  N  N  -22.035   7.139  18.420    5.530   1.439   0.205  C18  A5F  11  
A5F  C19  C12  C  0  1  N  N  N  -20.661   3.867  17.703    2.705  -0.828   0.695  C19  A5F  12  
A5F  C20  C13  C  0  1  N  N  N  -21.288  -0.809  12.387   -4.077  -0.548  -0.204  C20  A5F  13  
A5F  C21  C14  C  0  1  Y  N  N  -20.886   2.895  16.588    1.243  -0.768   0.501  C21  A5F  14  
A5F  C22  C15  C  0  1  Y  N  N  -20.044   1.645  16.660    0.422  -1.748   1.068  C22  A5F  15  
A5F  C23  C16  C  0  1  Y  N  N  -21.816   3.234  15.433    0.679   0.272  -0.245  C23  A5F  16  
A5F  C24  C17  C  0  1  Y  N  N  -21.112   0.956  14.397   -1.496  -0.655   0.138  C24  A5F  17  
A5F  C25  C18  C  0  1  N  N  N  -21.222  -0.049  13.277   -2.914  -0.596  -0.050  C25  A5F  18  
A5F  C26  C19  C  0  1  Y  N  N  -20.165   0.648  15.537   -0.931  -1.692   0.889  C26  A5F  19  
A5F  C27  C20  C  0  1  Y  N  N  -21.936   2.227  14.307   -0.674   0.332  -0.420  C27  A5F  20  
A5F  N5   N1   N  0  1  N  N  N  -21.052   5.216  17.400    3.497   0.116   0.149  N5   A5F  21  
A5F  N6   N2   N  0  1  N  N  N  -18.359   6.186  18.355    7.029  -0.821  -0.605  N6   A5F  22  
A5F  N7   N3   N  0  1  N  N  N  -22.605   7.240  19.711    6.780   1.691   0.642  N7   A5F  23  
A5F  O1   O1   O  0  1  N  N  N  -19.085  -2.916   5.681  -10.725   1.592   1.180  O1   A5F  24  
A5F  O2   O2   O  0  1  N  N  N  -22.524   7.728  17.491    4.874   2.327  -0.298  O2   A5F  25  
A5F  O3   O3   O  0  1  N  N  N  -20.061   3.591  18.688    3.195  -1.730   1.347  O3   A5F  26  
A5F  O04  O4   O  0  1  N  N  N  -23.702   8.104  19.738    7.356   2.969   0.443  O04  A5F  27  
A5F  H1   H1   H  0  1  N  N  N  -19.821  -4.906   8.165   -9.486   0.574  -2.190  H1   A5F  28  
A5F  H2   H2   H  0  1  N  N  N  -19.065  -3.997   9.517   -7.902   1.493  -1.967  H2   A5F  29  
A5F  H3   H3   H  0  1  N  N  N  -19.362  -1.768   8.223   -8.238   1.459   0.547  H3   A5F  30  
A5F  H4   H4   H  0  1  N  N  N  -21.996  -3.501   8.407   -8.565  -1.347  -0.813  H4   A5F  31  
A5F  H5   H5   H  0  1  N  N  N  -20.820  -1.883   6.063  -10.884   0.230  -0.365  H5   A5F  32  
A5F  H6   H6   H  0  1  N  N  N  -20.910  -3.667   6.252  -10.189  -0.403   1.146  H6   A5F  33  
A5F  H7   H7   H  0  1  N  N  N  -20.711   5.767  19.371    5.166  -0.334   1.336  H7   A5F  34  
A5F  H8   H8   H  0  1  N  N  N  -19.569   8.008  20.021    5.378  -2.631   0.504  H8   A5F  35  
A5F  H9   H9   H  0  1  N  N  N  -18.577   8.850  18.783    3.992  -2.328  -0.570  H9   A5F  36  
A5F  H10  H10  H  0  1  N  N  N  -20.370   8.940  18.711    5.518  -2.952  -1.242  H10  A5F  37  
A5F  H11  H11  H  0  1  N  N  N  -20.324   8.087  16.344    5.583  -1.049  -2.860  H11  A5F  38  
A5F  H12  H12  H  0  1  N  N  N  -18.530   8.019  16.423    4.057  -0.426  -2.189  H12  A5F  39  
A5F  H13  H13  H  0  1  N  N  N  -19.465   6.558  15.955    5.490   0.627  -2.268  H13  A5F  40  
A5F  H14  H14  H  0  1  N  N  N  -19.376   1.471  17.490    0.858  -2.549   1.646  H14  A5F  41  
A5F  H15  H15  H  0  1  N  N  N  -22.371   4.160  15.416    1.314   1.029  -0.682  H15  A5F  42  
A5F  H16  H16  H  0  1  N  N  N  -19.589  -0.266  15.545   -1.564  -2.454   1.320  H16  A5F  43  
A5F  H17  H17  H  0  1  N  N  N  -22.588   2.408  13.466   -1.109   1.133  -0.999  H17  A5F  44  
A5F  H18  H18  H  0  1  N  N  N  -21.473   5.440  16.521    3.106   0.835  -0.372  H18  A5F  45  
A5F  H19  H19  H  0  1  N  N  N  -18.377   5.892  19.311    7.368   0.128  -0.655  H19  A5F  46  
A5F  H20  H20  H  0  1  N  N  N  -18.375   5.383  17.759    7.342  -1.272   0.241  H20  A5F  47  
A5F  H22  H22  H  0  1  N  N  N  -22.262   6.749  20.512    7.285   0.996   1.093  H22  A5F  48  
A5F  H23  H23  H  0  1  N  N  N  -19.285  -3.004   4.756  -11.615   1.472   1.540  H23  A5F  49  
A5F  H24  H24  H  0  1  N  N  N  -23.858   8.445  18.865    8.255   3.053   0.791  H24  A5F  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A5F  O1   C11  SING  N  N   1  
A5F  C11  C8   SING  N  N   2  
A5F  C8   C10  SING  N  N   3  
A5F  C8   C9   SING  N  N   4  
A5F  C10  C9   SING  N  N   5  
A5F  C9   C12  SING  N  N   6  
A5F  C12  C15  TRIP  N  N   7  
A5F  C15  C20  SING  N  N   8  
A5F  C20  C25  TRIP  N  N   9  
A5F  C25  C24  SING  N  N  10  
A5F  C27  C24  DOUB  Y  N  11  
A5F  C27  C23  SING  Y  N  12  
A5F  C24  C26  SING  Y  N  13  
A5F  C23  C21  DOUB  Y  N  14  
A5F  C26  C22  DOUB  Y  N  15  
A5F  C21  C22  SING  Y  N  16  
A5F  C21  C19  SING  N  N  17  
A5F  C17  C13  SING  N  N  18  
A5F  N5   C19  SING  N  N  19  
A5F  N5   C14  SING  N  N  20  
A5F  O2   C18  DOUB  N  N  21  
A5F  C19  O3   DOUB  N  N  22  
A5F  C13  N6   SING  N  N  23  
A5F  C13  C14  SING  N  N  24  
A5F  C13  C16  SING  N  N  25  
A5F  C14  C18  SING  N  N  26  
A5F  C18  N7   SING  N  N  27  
A5F  N7   O04  SING  N  N  28  
A5F  C10  H1   SING  N  N  29  
A5F  C10  H2   SING  N  N  30  
A5F  C8   H3   SING  N  N  31  
A5F  C9   H4   SING  N  N  32  
A5F  C11  H5   SING  N  N  33  
A5F  C11  H6   SING  N  N  34  
A5F  C14  H7   SING  N  N  35  
A5F  C16  H8   SING  N  N  36  
A5F  C16  H9   SING  N  N  37  
A5F  C16  H10  SING  N  N  38  
A5F  C17  H11  SING  N  N  39  
A5F  C17  H12  SING  N  N  40  
A5F  C17  H13  SING  N  N  41  
A5F  C22  H14  SING  N  N  42  
A5F  C23  H15  SING  N  N  43  
A5F  C26  H16  SING  N  N  44  
A5F  C27  H17  SING  N  N  45  
A5F  N5   H18  SING  N  N  46  
A5F  N6   H19  SING  N  N  47  
A5F  N6   H20  SING  N  N  48  
A5F  N7   H22  SING  N  N  49  
A5F  O1   H23  SING  N  N  50  
A5F  O04  H24  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A5F  InChI             InChI                 1.03   "InChI=1S/C20H23N3O4/c1-20(2,21)17(19(26)23-27)22-18(25)14-9-7-13(8-10-14)5-3-4-6-15-11-16(15)12-24/h7-10,15-17,24,27H,11-12,21H2,1-2H3,(H,22,25)(H,23,26)/t15-,16+,17-/m1/s1"  
A5F  InChIKey          InChI                 1.03   GOCUUDXEOKIQRU-IXDOHACOSA-N  
A5F  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(N)[C@H](NC(=O)c1ccc(cc1)C#CC#C[C@@H]2C[C@H]2CO)C(=O)NO"  
A5F  SMILES            CACTVS                3.385  "CC(C)(N)[CH](NC(=O)c1ccc(cc1)C#CC#C[CH]2C[CH]2CO)C(=O)NO"  
A5F  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(C)([C@@H](C(=O)NO)NC(=O)c1ccc(cc1)C#CC#C[C@@H]2C[C@H]2CO)N"  
A5F  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)(C(C(=O)NO)NC(=O)c1ccc(cc1)C#CC#CC2CC2CO)N"  
#
_pdbx_chem_comp_identifier.comp_id          A5F
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "~{N}-[(2~{S})-3-azanyl-3-methyl-1-(oxidanylamino)-1-oxidanylidene-butan-2-yl]-4-[4-[(1~{R},2~{R})-2-(hydroxymethyl)cyclopropyl]buta-1,3-diynyl]benzamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A5F  "Create component"  2018-10-02  PDBJ  
A5F  "Modify synonyms"   2018-10-02  PDBJ  
A5F  "Initial release"   2019-01-30  RCSB  
A5F  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     A5F
_pdbx_chem_comp_synonyms.name        ACHN-975
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
