data_A1BDF
# 
_chem_comp.id                                    A1BDF 
_chem_comp.name                                  "(5R,8R)-6,7,8,9-tetrahydro-5H-5,8-epiminocyclohepta[d]pyrimidine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H11 N3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-10-15 
_chem_comp.pdbx_modified_date                    2024-10-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        161.204 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1BDF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7HKR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1BDF N1  N1  N 0 1 Y N N N N N -27.221 -27.506 -41.532 -1.714 -1.299 0.184  N1  A1BDF 1  
A1BDF C4  C1  C 0 1 N N N N N N -28.185 -29.743 -41.441 0.684  -1.695 -0.131 C4  A1BDF 2  
A1BDF C5  C2  C 0 1 Y N N N N N -27.955 -28.382 -40.833 -0.514 -0.788 -0.055 C5  A1BDF 3  
A1BDF C6  C3  C 0 1 Y N N N N N -27.080 -26.303 -40.969 -2.776 -0.522 0.244  C6  A1BDF 4  
A1BDF C7  C4  C 0 1 Y N N N N N -28.280 -26.798 -39.119 -1.534 1.365  -0.168 C7  A1BDF 5  
A1BDF C8  C5  C 0 1 Y N N N N N -28.522 -28.080 -39.591 -0.400 0.577  -0.231 C8  A1BDF 6  
A1BDF N   N2  N 0 1 N N N N N N -28.786 -30.383 -39.183 1.760  0.202  -1.229 N   A1BDF 7  
A1BDF C   C6  C 0 1 N N N N N N -30.582 -30.078 -40.689 2.255  -0.153 1.092  C   A1BDF 8  
A1BDF C1  C7  C 0 1 N N N N N N -30.755 -29.093 -39.512 1.652  1.257  0.913  C1  A1BDF 9  
A1BDF C2  C8  C 0 1 N N R N N N -29.372 -29.084 -38.836 0.956  1.202  -0.473 C2  A1BDF 10 
A1BDF C3  C9  C 0 1 N N S N N N -29.133 -30.585 -40.599 1.974  -0.882 -0.235 C3  A1BDF 11 
A1BDF N2  N3  N 0 1 Y N N N N N -27.571 -25.889 -39.801 -2.700 0.782  0.070  N2  A1BDF 12 
A1BDF H8  H1  H 0 1 N N N N N N -27.220 -30.265 -41.521 0.722  -2.315 0.765  H8  A1BDF 13 
A1BDF H7  H2  H 0 1 N N N N N N -28.617 -29.616 -42.445 0.594  -2.336 -1.008 H7  A1BDF 14 
A1BDF H9  H3  H 0 1 N N N N N N -26.500 -25.581 -41.525 -3.740 -0.967 0.442  H9  A1BDF 15 
A1BDF H10 H4  H 0 1 N N N N N N -28.682 -26.520 -38.156 -1.470 2.434  -0.310 H10 A1BDF 16 
A1BDF H11 H5  H 0 1 N N N N N N -27.793 -30.365 -39.062 1.251  -0.139 -2.031 H11 A1BDF 17 
A1BDF H   H7  H 0 1 N N N N N N -31.288 -30.916 -40.594 3.328  -0.085 1.267  H   A1BDF 18 
A1BDF H1  H8  H 0 1 N N N N N N -30.749 -29.564 -41.647 1.767  -0.670 1.918  H1  A1BDF 19 
A1BDF H3  H9  H 0 1 N N N N N N -31.020 -28.089 -39.876 0.924  1.463  1.697  H3  A1BDF 20 
A1BDF H2  H10 H 0 1 N N N N N N -31.530 -29.447 -38.816 2.439  2.011  0.915  H2  A1BDF 21 
A1BDF H4  H11 H 0 1 N N N N N N -29.423 -28.887 -37.755 0.896  2.175  -0.960 H4  A1BDF 22 
A1BDF H6  H12 H 0 1 N N N N N N -29.074 -31.646 -40.884 2.818  -1.510 -0.519 H6  A1BDF 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1BDF C  C1  SING N N 1  
A1BDF C1 C2  SING N N 2  
A1BDF C2 N   SING N N 3  
A1BDF N  C3  SING N N 4  
A1BDF C  C3  SING N N 5  
A1BDF C3 C4  SING N N 6  
A1BDF C4 C5  SING N N 7  
A1BDF C5 N1  DOUB Y N 8  
A1BDF N1 C6  SING Y N 9  
A1BDF C6 N2  DOUB Y N 10 
A1BDF N2 C7  SING Y N 11 
A1BDF C8 C7  DOUB Y N 12 
A1BDF C2 C8  SING N N 13 
A1BDF C5 C8  SING Y N 14 
A1BDF C4 H8  SING N N 15 
A1BDF C4 H7  SING N N 16 
A1BDF C6 H9  SING N N 17 
A1BDF C7 H10 SING N N 18 
A1BDF N  H11 SING N N 19 
A1BDF C  H   SING N N 20 
A1BDF C  H1  SING N N 21 
A1BDF C1 H3  SING N N 22 
A1BDF C1 H2  SING N N 23 
A1BDF C2 H4  SING N N 24 
A1BDF C3 H6  SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1BDF SMILES           ACDLabs              14.52   "c1nc2CC3CCC(N3)c2cn1"                                                
A1BDF InChI            InChI                1.06    "InChI=1S/C9H11N3/c1-2-8-7-4-10-5-11-9(7)3-6(1)12-8/h4-6,8,12H,1-3H2" 
A1BDF InChIKey         InChI                1.06    OTYQMHKAYHPBDY-UHFFFAOYSA-N                                           
A1BDF SMILES_CANONICAL CACTVS               3.385   "C1C[C@H]2N[C@@H]1Cc3ncncc23"                                         
A1BDF SMILES           CACTVS               3.385   "C1C[CH]2N[CH]1Cc3ncncc23"                                            
A1BDF SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c2c(ncn1)C[C@@H]3CC[C@H]2N3"                                       
A1BDF SMILES           "OpenEye OEToolkits" 3.1.0.0 "c1c2c(ncn1)CC3CCC2N3"                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1BDF "SYSTEMATIC NAME" ACDLabs              14.52   "(5R,8R)-6,7,8,9-tetrahydro-5H-5,8-epiminocyclohepta[d]pyrimidine"      
A1BDF "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(1~{R},9~{S})-4,6,12-triazatricyclo[7.2.1.0^{2,7}]dodeca-2,4,6-triene" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1BDF "Create component" 2024-10-15 RCSB 
A1BDF "Initial release"  2024-10-30 RCSB 
# 
