data_9PF
#

_chem_comp.id                                   9PF
_chem_comp.name                                 "1-deoxy-1-{5-[(1S)-2-fluoro-1-hydroxyethyl]-7,8-dimethyl-2,4-dioxo-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl}-5-O-phosphono-D-ribitol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H26 F N4 O10 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-06-20
_chem_comp.pdbx_modified_date                   2019-06-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       520.403
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9PF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6A36
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9PF  CAP  C1   C  0  1  N  N  N   -9.301  -25.471  -27.949  -1.863   4.586  -1.652  CAP  9PF   1  
9PF  CAQ  C2   C  0  1  N  N  N   -8.624  -27.719  -26.344  -4.264   4.533  -0.055  CAQ  9PF   2  
9PF  CBB  C3   C  0  1  Y  N  N   -8.708  -28.067  -30.541  -2.049   0.933  -0.712  CBB  9PF   3  
9PF  CBA  C4   C  0  1  Y  N  N   -8.446  -29.172  -29.742  -3.211   0.908   0.060  CBA  9PF   4  
9PF  CAZ  C5   C  0  1  Y  N  N   -8.394  -29.027  -28.360  -3.927   2.073   0.272  CAZ  9PF   5  
9PF  CAM  C6   C  0  1  N  N  N   -8.957  -26.980  -32.734   0.025  -0.212  -1.469  CAM  9PF   6  
9PF  PAD  P1   P  0  1  N  N  N  -11.280  -21.068  -31.360   7.415   0.090   0.524  PAD  9PF   7  
9PF  OAB  O1   O  0  1  N  N  N  -12.825  -20.727  -31.514   7.806  -1.012  -0.383  OAB  9PF   8  
9PF  OAE  O2   O  0  1  N  N  N   -9.702  -25.231  -34.818   2.702  -1.255  -1.645  OAE  9PF   9  
9PF  OAC  O3   O  0  1  N  N  N  -10.523  -19.860  -30.931   8.169  -0.085   1.936  OAC  9PF  10  
9PF  CAL  C7   C  0  1  N  N  S  -10.427  -26.574  -32.953   1.032  -0.114  -0.322  CAL  9PF  11  
9PF  CAT  C8   C  0  1  N  N  N   -9.149  -30.742  -34.347  -1.936  -3.821  -0.763  CAT  9PF  12  
9PF  CAI  C9   C  0  1  N  N  N  -11.011  -22.938  -33.163   4.878   0.079  -0.314  CAI  9PF  13  
9PF  CAJ  C10  C  0  1  N  N  R  -10.091  -24.067  -32.731   3.459   0.032   0.256  CAJ  9PF  14  
9PF  OAA  O4   O  0  1  N  N  N  -11.293  -22.057  -30.141   7.828   1.500  -0.134  OAA  9PF  15  
9PF  OAH  O5   O  0  1  N  N  N  -10.608  -21.699  -32.676   5.823   0.053   0.758  OAH  9PF  16  
9PF  OAF  O6   O  0  1  N  N  N  -10.268  -24.356  -31.311   3.208   1.220   1.009  OAF  9PF  17  
9PF  CAK  C11  C  0  1  N  N  S  -10.519  -25.216  -33.638   2.451  -0.067  -0.892  CAK  9PF  18  
9PF  OAG  O7   O  0  1  N  N  N  -11.098  -27.516  -33.791   0.782   1.075   0.431  OAG  9PF  19  
9PF  NAY  N1   N  0  1  N  N  N   -8.792  -28.209  -31.888  -1.334  -0.257  -0.924  NAY  9PF  20  
9PF  CBC  C12  C  0  1  Y  N  N   -9.037  -26.862  -29.925  -1.615   2.125  -1.265  CBC  9PF  21  
9PF  CBD  C13  C  0  1  Y  N  N   -9.002  -26.707  -28.538  -2.336   3.287  -1.049  CBD  9PF  22  
9PF  CBE  C14  C  0  1  Y  N  N   -8.673  -27.811  -27.754  -3.486   3.262  -0.284  CBE  9PF  23  
9PF  N    N2   N  0  1  N  N  N   -8.113  -30.310  -30.345  -3.639  -0.309   0.611  N    9PF  24  
9PF  CBF  C15  C  0  1  N  N  S   -6.867  -30.927  -29.818  -4.673  -0.337   1.649  CBF  9PF  25  
9PF  CBH  C16  C  0  1  N  N  N   -6.047  -31.669  -30.842  -6.049  -0.165   1.002  CBH  9PF  26  
9PF  FBI  F1   F  0  1  N  N  N   -6.227  -31.347  -31.925  -6.052   0.990   0.213  FBI  9PF  27  
9PF  OBG  O8   O  0  1  N  N  N   -7.185  -31.710  -28.680  -4.446   0.726   2.576  OBG  9PF  28  
9PF  CA   C17  C  0  1  N  N  N   -8.629  -30.580  -31.672  -3.052  -1.511   0.144  CA   9PF  29  
9PF  CAX  C18  C  0  1  N  N  N   -8.874  -29.432  -32.446  -1.916  -1.467  -0.616  CAX  9PF  30  
9PF  NAU  N3   N  0  1  N  N  N   -9.049  -29.546  -33.761  -1.363  -2.641  -1.067  NAU  9PF  31  
9PF  OAO  O9   O  0  1  N  N  N   -9.343  -30.855  -35.559  -1.435  -4.851  -1.171  OAO  9PF  32  
9PF  NAS  N4   N  0  1  N  N  N   -9.039  -31.884  -33.572  -3.047  -3.881  -0.013  NAS  9PF  33  
9PF  C    C19  C  0  1  N  N  N   -8.824  -31.771  -32.221  -3.627  -2.754   0.447  C    9PF  34  
9PF  O    O10  O  0  1  N  N  N   -8.686  -32.818  -31.566  -4.636  -2.815   1.130  O    9PF  35  
9PF  H1   H1   H  0  1  N  N  N  -10.380  -25.414  -27.743  -2.306   4.710  -2.640  H1   9PF  36  
9PF  H2   H2   H  0  1  N  N  N   -8.742  -25.369  -27.007  -2.166   5.415  -1.012  H2   9PF  37  
9PF  H3   H3   H  0  1  N  N  N   -9.015  -24.660  -28.634  -0.777   4.572  -1.739  H3   9PF  38  
9PF  H4   H4   H  0  1  N  N  N   -9.614  -27.954  -25.926  -3.895   5.027   0.843  H4   9PF  39  
9PF  H5   H5   H  0  1  N  N  N   -7.883  -28.434  -25.956  -4.139   5.195  -0.912  H5   9PF  40  
9PF  H6   H6   H  0  1  N  N  N   -8.336  -26.698  -26.053  -5.320   4.295   0.069  H6   9PF  41  
9PF  H7   H7   H  0  1  N  N  N   -8.132  -29.877  -27.747  -4.826   2.055   0.870  H7   9PF  42  
9PF  H8   H8   H  0  1  N  N  N   -8.499  -27.170  -33.716   0.127   0.658  -2.118  H8   9PF  43  
9PF  H9   H9   H  0  1  N  N  N   -8.436  -26.146  -32.241   0.216  -1.118  -2.044  H9   9PF  44  
9PF  H10  H10  H  0  1  N  N  N   -9.754  -24.387  -35.251   2.628  -2.070  -1.129  H10  9PF  45  
9PF  H11  H11  H  0  1  N  N  N  -11.121  -19.128  -30.836   9.133  -0.072   1.871  H11  9PF  46  
9PF  H12  H12  H  0  1  N  N  N  -10.925  -26.514  -31.974   0.930  -0.983   0.327  H12  9PF  47  
9PF  H13  H13  H  0  1  N  N  N  -11.024  -22.896  -34.262   5.038  -0.784  -0.960  H13  9PF  48  
9PF  H14  H14  H  0  1  N  N  N  -12.025  -23.149  -32.792   5.008   0.994  -0.891  H14  9PF  49  
9PF  H15  H15  H  0  1  N  N  N   -9.046  -23.797  -32.943   3.356  -0.838   0.905  H15  9PF  50  
9PF  H16  H16  H  0  1  N  N  N  -12.186  -22.177  -29.840   7.602   2.268   0.407  H16  9PF  51  
9PF  H17  H17  H  0  1  N  N  N   -9.986  -23.608  -30.798   3.282   2.035   0.494  H17  9PF  52  
9PF  H18  H18  H  0  1  N  N  N  -11.568  -25.050  -33.926   2.554   0.803  -1.541  H18  9PF  53  
9PF  H19  H19  H  0  1  N  N  N  -11.060  -28.378  -33.393   0.856   1.890  -0.084  H19  9PF  54  
9PF  H20  H20  H  0  1  N  N  N   -9.328  -26.022  -30.539  -0.715   2.149  -1.863  H20  9PF  55  
9PF  H21  H21  H  0  1  N  N  N   -6.236  -30.095  -29.470  -4.635  -1.292   2.174  H21  9PF  56  
9PF  H22  H22  H  0  1  N  N  N   -6.284  -32.740  -30.759  -6.269  -1.032   0.379  H22  9PF  57  
9PF  H23  H23  H  0  1  N  N  N   -4.984  -31.510  -30.610  -6.807  -0.075   1.780  H23  9PF  58  
9PF  H24  H24  H  0  1  N  N  N   -7.700  -31.192  -28.073  -4.547   1.609   2.195  H24  9PF  59  
9PF  H25  H25  H  0  1  N  N  N   -9.107  -28.720  -34.321  -0.557  -2.620  -1.607  H25  9PF  60  
9PF  H26  H26  H  0  1  N  N  N   -9.116  -32.787  -33.995  -3.441  -4.743   0.194  H26  9PF  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9PF  OAO  CAT  DOUB  N  N   1  
9PF  OAE  CAK  SING  N  N   2  
9PF  CAT  NAU  SING  N  N   3  
9PF  CAT  NAS  SING  N  N   4  
9PF  OAG  CAL  SING  N  N   5  
9PF  NAU  CAX  SING  N  N   6  
9PF  CAK  CAL  SING  N  N   7  
9PF  CAK  CAJ  SING  N  N   8  
9PF  NAS  C    SING  N  N   9  
9PF  CAI  CAJ  SING  N  N  10  
9PF  CAI  OAH  SING  N  N  11  
9PF  CAL  CAM  SING  N  N  12  
9PF  CAM  NAY  SING  N  N  13  
9PF  CAJ  OAF  SING  N  N  14  
9PF  OAH  PAD  SING  N  N  15  
9PF  CAX  NAY  SING  N  N  16  
9PF  CAX  CA   DOUB  N  N  17  
9PF  C    CA   SING  N  N  18  
9PF  C    O    DOUB  N  N  19  
9PF  FBI  CBH  SING  N  N  20  
9PF  NAY  CBB  SING  N  N  21  
9PF  CA   N    SING  N  N  22  
9PF  OAB  PAD  DOUB  N  N  23  
9PF  PAD  OAC  SING  N  N  24  
9PF  PAD  OAA  SING  N  N  25  
9PF  CBH  CBF  SING  N  N  26  
9PF  CBB  CBC  SING  Y  N  27  
9PF  CBB  CBA  DOUB  Y  N  28  
9PF  N    CBF  SING  N  N  29  
9PF  N    CBA  SING  N  N  30  
9PF  CBC  CBD  DOUB  Y  N  31  
9PF  CBF  OBG  SING  N  N  32  
9PF  CBA  CAZ  SING  Y  N  33  
9PF  CBD  CAP  SING  N  N  34  
9PF  CBD  CBE  SING  Y  N  35  
9PF  CAZ  CBE  DOUB  Y  N  36  
9PF  CBE  CAQ  SING  N  N  37  
9PF  CAP  H1   SING  N  N  38  
9PF  CAP  H2   SING  N  N  39  
9PF  CAP  H3   SING  N  N  40  
9PF  CAQ  H4   SING  N  N  41  
9PF  CAQ  H5   SING  N  N  42  
9PF  CAQ  H6   SING  N  N  43  
9PF  CAZ  H7   SING  N  N  44  
9PF  CAM  H8   SING  N  N  45  
9PF  CAM  H9   SING  N  N  46  
9PF  OAE  H10  SING  N  N  47  
9PF  OAC  H11  SING  N  N  48  
9PF  CAL  H12  SING  N  N  49  
9PF  CAI  H13  SING  N  N  50  
9PF  CAI  H14  SING  N  N  51  
9PF  CAJ  H15  SING  N  N  52  
9PF  OAA  H16  SING  N  N  53  
9PF  OAF  H17  SING  N  N  54  
9PF  CAK  H18  SING  N  N  55  
9PF  OAG  H19  SING  N  N  56  
9PF  CBC  H20  SING  N  N  57  
9PF  CBF  H21  SING  N  N  58  
9PF  CBH  H22  SING  N  N  59  
9PF  CBH  H23  SING  N  N  60  
9PF  OBG  H24  SING  N  N  61  
9PF  NAU  H25  SING  N  N  62  
9PF  NAS  H26  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9PF  SMILES            ACDLabs               12.01  "Cc1cc2c(cc1C)N(C(O)CF)C3=C(N2CC(C(O)C(COP(O)(O)=O)O)O)NC(NC3=O)=O"  
9PF  InChI             InChI                 1.03   "InChI=1S/C19H26FN4O10P/c1-8-3-10-11(4-9(8)2)24(14(27)5-20)15-17(21-19(30)22-18(15)29)23(10)6-12(25)16(28)13(26)7-34-35(31,32)33/h3-4,12-14,16,25-28H,5-7H2,1-2H3,(H2,31,32,33)(H2,21,22,29,30)/t12-,13+,14-,16-/m0/s1"  
9PF  InChIKey          InChI                 1.03   OZHHWIFDZLGTFX-FQLMCAECSA-N  
9PF  SMILES_CANONICAL  CACTVS                3.385  "Cc1cc2N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)C3=C(N([C@@H](O)CF)c2cc1C)C(=O)NC(=O)N3"  
9PF  SMILES            CACTVS                3.385  "Cc1cc2N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)C3=C(N([CH](O)CF)c2cc1C)C(=O)NC(=O)N3"  
9PF  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "Cc1cc2c(cc1C)N(C3=C(N2C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)NC(=O)NC3=O)[C@H](CF)O"  
9PF  SMILES            "OpenEye OEToolkits"  2.0.6  "Cc1cc2c(cc1C)N(C3=C(N2CC(C(C(COP(=O)(O)O)O)O)O)NC(=O)NC3=O)C(CF)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9PF  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-deoxy-1-{5-[(1S)-2-fluoro-1-hydroxyethyl]-7,8-dimethyl-2,4-dioxo-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl}-5-O-phosphono-D-ribitol"  
9PF  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "[(2~{R},3~{S},4~{S})-5-[5-[(1~{S})-2-fluoranyl-1-oxidanyl-ethyl]-7,8-dimethyl-2,4-bis(oxidanylidene)-1~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9PF  "Create component"  2018-06-20  PDBJ  
9PF  "Modify name"       2018-07-23  PDBJ  
9PF  "Initial release"   2019-06-19  RCSB  
##
