data_8BF
#

_chem_comp.id                                   8BF
_chem_comp.name                                 
;(1~{R},3~{R})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-1-[(2~{R},6~{R})-6-(4-hydroxyphenyl)-6-oxidanyl-hexan-2-yl]-7~{
a}-methyl-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C31 H44 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "25RS-(Hydroxyphenyl)-2-methylidene-19,26,27-trinor-1,25-dihydroxyvitamin D3"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-07
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       480.679
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8BF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5XPP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8BF  O35  O1   O  0  1  N  N  N   6.110   2.273  29.031  -11.094  -1.683   1.110  O35  8BF   1  
8BF  C26  C1   C  0  1  Y  N  N   7.030   1.461  28.463   -9.897  -1.354   0.557  C26  8BF   2  
8BF  C25  C2   C  0  1  Y  N  N   8.102   1.976  27.750   -9.698  -0.084   0.034  C25  8BF   3  
8BF  C24  C3   C  0  1  Y  N  N   9.009   1.105  27.177   -8.479   0.249  -0.523  C24  8BF   4  
8BF  C27  C4   C  0  1  Y  N  N   6.851   0.105  28.610   -8.870  -2.286   0.519  C27  8BF   5  
8BF  C28  C5   C  0  1  Y  N  N   7.751  -0.779  28.040   -7.654  -1.949  -0.044  C28  8BF   6  
8BF  C23  C6   C  0  1  Y  N  N   8.840  -0.287  27.317   -7.457  -0.681  -0.559  C23  8BF   7  
8BF  C22  C7   C  0  1  N  N  R   9.773  -1.297  26.729   -6.128  -0.315  -1.168  C22  8BF   8  
8BF  O34  O2   O  0  1  N  N  N  10.106  -2.252  27.767   -5.629  -1.420  -1.925  O34  8BF   9  
8BF  C21  C8   C  0  1  N  N  N  11.007  -0.646  26.066   -5.135   0.030  -0.055  C21  8BF  10  
8BF  C20  C9   C  0  1  N  N  N  11.966   0.011  27.083   -3.825   0.522  -0.675  C20  8BF  11  
8BF  C19  C10  C  0  1  N  N  N  12.960   0.974  26.414   -2.833   0.867   0.438  C19  8BF  12  
8BF  C18  C11  C  0  1  N  N  R  13.309   2.166  27.302   -1.523   1.358  -0.181  C18  8BF  13  
8BF  C33  C12  C  0  1  N  N  N  13.763   1.639  28.670   -1.772   2.672  -0.924  C33  8BF  14  
8BF  C17  C13  C  0  1  N  N  R  14.386   3.093  26.720   -0.490   1.584   0.924  C17  8BF  15  
8BF  C13  C14  C  0  1  N  N  R  13.929   4.432  26.158    0.832   2.040   0.326  C13  8BF  16  
8BF  C32  C15  C  0  1  N  N  N  12.839   4.289  25.091    1.027   1.372  -1.036  C32  8BF  17  
8BF  C12  C16  C  0  1  N  N  N  13.493   5.481  27.166    1.087   3.523   0.196  C12  8BF  18  
8BF  C11  C17  C  0  1  N  N  N  13.445   6.872  26.529    2.430   3.701  -0.532  C11  8BF  19  
8BF  C10  C18  C  0  1  N  N  N  14.732   7.268  25.777    3.578   3.036   0.226  C10  8BF  20  
8BF  C16  C19  C  0  1  N  N  N  15.267   2.511  25.610   -0.170   0.249   1.644  C16  8BF  21  
8BF  C15  C20  C  0  1  N  N  N  15.867   3.689  24.857    1.365   0.039   1.513  C15  8BF  22  
8BF  C14  C21  C  0  1  N  N  S  15.253   4.872  25.575    1.886   1.467   1.316  C14  8BF  23  
8BF  C9   C22  C  0  1  N  N  N  15.067   6.142  24.832    3.208   1.614   0.623  C9   8BF  24  
8BF  C8   C23  C  0  1  N  N  N  15.214   6.209  23.507    4.001   0.577   0.375  C8   8BF  25  
8BF  C7   C24  C  0  1  N  N  N  14.990   7.439  22.753    5.288   0.782  -0.308  C7   8BF  26  
8BF  C6   C25  C  0  1  N  N  N  14.854   7.468  21.409    6.030  -0.264  -0.654  C6   8BF  27  
8BF  C1   C26  C  0  1  N  N  N  14.975   6.201  20.578    7.412  -0.068  -1.234  C1   8BF  28  
8BF  C5   C27  C  0  1  N  N  N  14.572   8.816  20.761    5.510  -1.671  -0.468  C5   8BF  29  
8BF  C4   C28  C  0  1  N  N  R  15.223   8.890  19.374    6.519  -2.458   0.380  C4   8BF  30  
8BF  O30  O3   O  0  1  N  N  N  16.661   8.890  19.427    6.182  -3.846   0.360  O30  8BF  31  
8BF  C3   C29  C  0  1  N  N  N  14.805   7.679  18.594    7.898  -2.262  -0.207  C3   8BF  32  
8BF  C31  C30  C  0  1  N  N  N  14.025   7.804  17.530    8.632  -3.292  -0.548  C31  8BF  33  
8BF  C2   C31  C  0  1  N  N  R  15.324   6.372  19.109    8.416  -0.858  -0.385  C2   8BF  34  
8BF  O29  O4   O  0  1  N  N  N  14.754   5.232  18.465    8.566  -0.236   0.893  O29  8BF  35  
8BF  H1   H1   H  0  1  N  N  N   5.454   1.748  29.475  -11.154  -1.495   2.057  H1   8BF  36  
8BF  H2   H2   H  0  1  N  N  N   8.226   3.044  27.644  -10.496   0.643   0.062  H2   8BF  37  
8BF  H3   H3   H  0  1  N  N  N   9.850   1.492  26.620   -8.324   1.237  -0.930  H3   8BF  38  
8BF  H4   H4   H  0  1  N  N  N   6.008  -0.270  29.171   -9.020  -3.273   0.929  H4   8BF  39  
8BF  H5   H5   H  0  1  N  N  N   7.612  -1.844  28.154   -6.854  -2.674  -0.074  H5   8BF  40  
8BF  H6   H6   H  0  1  N  N  N   9.227  -1.830  25.937   -6.253   0.547  -1.823  H6   8BF  41  
8BF  H7   H7   H  0  1  N  N  N   9.308  -2.614  28.133   -5.493  -2.224  -1.404  H7   8BF  42  
8BF  H8   H8   H  0  1  N  N  N  11.559  -1.422  25.516   -5.555   0.813   0.576  H8   8BF  43  
8BF  H9   H9   H  0  1  N  N  N  10.660   0.126  25.363   -4.942  -0.857   0.547  H9   8BF  44  
8BF  H10  H10  H  0  1  N  N  N  11.371   0.572  27.818   -3.406  -0.262  -1.306  H10  8BF  45  
8BF  H11  H11  H  0  1  N  N  N  12.532  -0.780  27.597   -4.019   1.409  -1.277  H11  8BF  46  
8BF  H12  H12  H  0  1  N  N  N  13.884   0.423  26.184   -3.253   1.650   1.069  H12  8BF  47  
8BF  H13  H13  H  0  1  N  N  N  12.514   1.348  25.481   -2.640  -0.021   1.040  H13  8BF  48  
8BF  H14  H14  H  0  1  N  N  N  12.395   2.759  27.452   -1.149   0.611  -0.881  H14  8BF  49  
8BF  H15  H15  H  0  1  N  N  N  14.019   2.486  29.323   -0.839   3.023  -1.365  H15  8BF  50  
8BF  H16  H16  H  0  1  N  N  N  12.949   1.056  29.127   -2.508   2.511  -1.712  H16  8BF  51  
8BF  H17  H17  H  0  1  N  N  N  14.646   0.996  28.540   -2.146   3.420  -0.225  H17  8BF  52  
8BF  H18  H18  H  0  1  N  N  N  15.065   3.328  27.553   -0.856   2.322   1.639  H18  8BF  53  
8BF  H19  H19  H  0  1  N  N  N  11.900   3.968  25.566    0.293   1.763  -1.741  H19  8BF  54  
8BF  H20  H20  H  0  1  N  N  N  12.685   5.257  24.592    2.031   1.583  -1.404  H20  8BF  55  
8BF  H21  H21  H  0  1  N  N  N  13.149   3.539  24.348    0.896   0.295  -0.935  H21  8BF  56  
8BF  H22  H22  H  0  1  N  N  N  12.492   5.223  27.542    0.288   3.987  -0.384  H22  8BF  57  
8BF  H23  H23  H  0  1  N  N  N  14.207   5.494  28.003    1.138   3.979   1.185  H23  8BF  58  
8BF  H24  H24  H  0  1  N  N  N  13.270   7.610  27.325    2.357   3.258  -1.526  H24  8BF  59  
8BF  H25  H25  H  0  1  N  N  N  12.608   6.896  25.816    2.642   4.766  -0.633  H25  8BF  60  
8BF  H26  H26  H  0  1  N  N  N  15.555   7.416  26.492    4.462   3.013  -0.410  H26  8BF  61  
8BF  H27  H27  H  0  1  N  N  N  14.566   8.197  25.211    3.796   3.614   1.124  H27  8BF  62  
8BF  H28  H28  H  0  1  N  N  N  14.660   1.896  24.929   -0.451   0.313   2.695  H28  8BF  63  
8BF  H29  H29  H  0  1  N  N  N  16.067   1.894  26.046   -0.703  -0.572   1.164  H29  8BF  64  
8BF  H30  H30  H  0  1  N  N  N  15.579   3.673  23.796    1.775  -0.399   2.423  H30  8BF  65  
8BF  H31  H31  H  0  1  N  N  N  16.964   3.698  24.939    1.597  -0.581   0.647  H31  8BF  66  
8BF  H32  H32  H  0  1  N  N  N  15.911   5.095  26.428    1.873   2.016   2.257  H32  8BF  67  
8BF  H33  H33  H  0  1  N  N  N  15.510   5.319  22.972    3.701  -0.416   0.674  H33  8BF  68  
8BF  H34  H34  H  0  1  N  N  N  14.930   8.371  23.296    5.629   1.783  -0.528  H34  8BF  69  
8BF  H35  H35  H  0  1  N  N  N  14.010   5.676  20.631    7.433  -0.435  -2.260  H35  8BF  70  
8BF  H36  H36  H  0  1  N  N  N  15.758   5.578  21.035    7.669   0.991  -1.218  H36  8BF  71  
8BF  H37  H37  H  0  1  N  N  N  14.980   9.616  21.396    4.548  -1.641   0.043  H37  8BF  72  
8BF  H38  H38  H  0  1  N  N  N  13.485   8.948  20.658    5.394  -2.150  -1.440  H38  8BF  73  
8BF  H39  H39  H  0  1  N  N  N  14.863   9.794  18.861    6.499  -2.091   1.406  H39  8BF  74  
8BF  H40  H40  H  0  1  N  N  N  16.960   9.647  19.916    6.780  -4.403   0.877  H40  8BF  75  
8BF  H41  H41  H  0  1  N  N  N  13.687   8.782  17.220    9.618  -3.139  -0.961  H41  8BF  76  
8BF  H42  H42  H  0  1  N  N  N  13.728   6.928  16.973    8.252  -4.294  -0.416  H42  8BF  77  
8BF  H43  H43  H  0  1  N  N  N  16.419   6.355  19.002    9.379  -0.886  -0.896  H43  8BF  78  
8BF  H44  H44  H  0  1  N  N  N  15.124   4.440  18.837    9.180  -0.693   1.483  H44  8BF  79  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8BF  C31  C3   DOUB  N  N   1  
8BF  O29  C2   SING  N  N   2  
8BF  C3   C2   SING  N  N   3  
8BF  C3   C4   SING  N  N   4  
8BF  C2   C1   SING  N  N   5  
8BF  C4   O30  SING  N  N   6  
8BF  C4   C5   SING  N  N   7  
8BF  C1   C6   SING  N  N   8  
8BF  C5   C6   SING  N  N   9  
8BF  C6   C7   DOUB  N  N  10  
8BF  C7   C8   SING  N  N  11  
8BF  C8   C9   DOUB  N  E  12  
8BF  C9   C14  SING  N  N  13  
8BF  C9   C10  SING  N  N  14  
8BF  C15  C14  SING  N  N  15  
8BF  C15  C16  SING  N  N  16  
8BF  C32  C13  SING  N  N  17  
8BF  C14  C13  SING  N  N  18  
8BF  C16  C17  SING  N  N  19  
8BF  C10  C11  SING  N  N  20  
8BF  C21  C22  SING  N  N  21  
8BF  C21  C20  SING  N  N  22  
8BF  C13  C17  SING  N  N  23  
8BF  C13  C12  SING  N  N  24  
8BF  C19  C20  SING  N  N  25  
8BF  C19  C18  SING  N  N  26  
8BF  C11  C12  SING  N  N  27  
8BF  C17  C18  SING  N  N  28  
8BF  C22  C23  SING  N  N  29  
8BF  C22  O34  SING  N  N  30  
8BF  C24  C23  DOUB  Y  N  31  
8BF  C24  C25  SING  Y  N  32  
8BF  C18  C33  SING  N  N  33  
8BF  C23  C28  SING  Y  N  34  
8BF  C25  C26  DOUB  Y  N  35  
8BF  C28  C27  DOUB  Y  N  36  
8BF  C26  C27  SING  Y  N  37  
8BF  C26  O35  SING  N  N  38  
8BF  O35  H1   SING  N  N  39  
8BF  C25  H2   SING  N  N  40  
8BF  C24  H3   SING  N  N  41  
8BF  C27  H4   SING  N  N  42  
8BF  C28  H5   SING  N  N  43  
8BF  C22  H6   SING  N  N  44  
8BF  O34  H7   SING  N  N  45  
8BF  C21  H8   SING  N  N  46  
8BF  C21  H9   SING  N  N  47  
8BF  C20  H10  SING  N  N  48  
8BF  C20  H11  SING  N  N  49  
8BF  C19  H12  SING  N  N  50  
8BF  C19  H13  SING  N  N  51  
8BF  C18  H14  SING  N  N  52  
8BF  C33  H15  SING  N  N  53  
8BF  C33  H16  SING  N  N  54  
8BF  C33  H17  SING  N  N  55  
8BF  C17  H18  SING  N  N  56  
8BF  C32  H19  SING  N  N  57  
8BF  C32  H20  SING  N  N  58  
8BF  C32  H21  SING  N  N  59  
8BF  C12  H22  SING  N  N  60  
8BF  C12  H23  SING  N  N  61  
8BF  C11  H24  SING  N  N  62  
8BF  C11  H25  SING  N  N  63  
8BF  C10  H26  SING  N  N  64  
8BF  C10  H27  SING  N  N  65  
8BF  C16  H28  SING  N  N  66  
8BF  C16  H29  SING  N  N  67  
8BF  C15  H30  SING  N  N  68  
8BF  C15  H31  SING  N  N  69  
8BF  C14  H32  SING  N  N  70  
8BF  C8   H33  SING  N  N  71  
8BF  C7   H34  SING  N  N  72  
8BF  C1   H35  SING  N  N  73  
8BF  C1   H36  SING  N  N  74  
8BF  C5   H37  SING  N  N  75  
8BF  C5   H38  SING  N  N  76  
8BF  C4   H39  SING  N  N  77  
8BF  O30  H40  SING  N  N  78  
8BF  C31  H41  SING  N  N  79  
8BF  C31  H42  SING  N  N  80  
8BF  C2   H43  SING  N  N  81  
8BF  O29  H44  SING  N  N  82  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8BF  InChI             InChI                 1.03   "InChI=1S/C31H44O4/c1-20(6-4-8-28(33)24-11-13-25(32)14-12-24)26-15-16-27-23(7-5-17-31(26,27)3)10-9-22-18-29(34)21(2)30(35)19-22/h9-14,20,26-30,32-35H,2,4-8,15-19H2,1,3H3/b23-10+/t20-,26-,27+,28-,29-,30-,31-/m1/s1"  
8BF  InChIKey          InChI                 1.03   YBYKLULOUNBMJL-PJZOPEKWSA-N  
8BF  SMILES_CANONICAL  CACTVS                3.385  "C[C@H](CCC[C@@H](O)c1ccc(O)cc1)[C@H]2CC[C@H]3C(/CCC[C@]23C)=C/C=C\4C[C@@H](O)C(=C)[C@H](O)C\4"  
8BF  SMILES            CACTVS                3.385  "C[CH](CCC[CH](O)c1ccc(O)cc1)[CH]2CC[CH]3C(CCC[C]23C)=CC=C4C[CH](O)C(=C)[CH](O)C4"  
8BF  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@H](CCC[C@H](c1ccc(cc1)O)O)[C@H]2CC[C@@H]\3[C@@]2(CCC/C3=C\C=C4C[C@H](C(=C)[C@@H](C4)O)O)C"  
8BF  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(CCCC(c1ccc(cc1)O)O)C2CCC3C2(CCCC3=CC=C4CC(C(=C)C(C4)O)O)C"  
#
_pdbx_chem_comp_identifier.comp_id          8BF
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(1~{R},3~{R})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-1-[(2~{R},6~{R})-6-(4-hydroxyphenyl)-6-oxidanyl-hexan-2-yl]-7~{a}-methyl-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8BF  "Create component"  2017-06-07  PDBJ  
8BF  "Initial release"   2018-06-06  RCSB  
8BF  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     8BF
_pdbx_chem_comp_synonyms.name        "25RS-(Hydroxyphenyl)-2-methylidene-19,26,27-trinor-1,25-dihydroxyvitamin D3"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
