data_YCE
# 
_chem_comp.id                                    YCE 
_chem_comp.name                                  "[(2R)-2-hydroxy-3-{[(4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]amino}propyl]phosphonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H15 N4 O5 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-24 
_chem_comp.pdbx_modified_date                    2023-07-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        302.224 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YCE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FWZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YCE C10  C1  C 0 1 Y N N -1.016 106.725 104.749 2.395  -1.128 0.578  C10  YCE 1  
YCE N12  N1  N 0 1 N N N 1.149  107.880 105.035 0.002  -0.736 0.420  N12  YCE 2  
YCE C13  C2  C 0 1 N N N 1.641  107.411 103.739 -1.304 -0.825 1.086  C13  YCE 3  
YCE C15  C3  C 0 1 N N N 1.749  107.826 101.223 -3.733 -0.273 0.883  C15  YCE 4  
YCE C02  C4  C 0 1 N N N -2.410 103.591 105.771 5.272  0.673  -0.574 C02  YCE 5  
YCE C04  C5  C 0 1 N N N -1.548 104.465 107.865 3.928  2.221  0.580  C04  YCE 6  
YCE C06  C6  C 0 1 Y N N -1.322 105.757 105.682 3.175  0.041  0.442  C06  YCE 7  
YCE C07  C7  C 0 1 Y N N -1.955 104.776 104.992 4.311  -0.320 -0.290 C07  YCE 8  
YCE C09  C8  C 0 1 Y N N -1.500 106.252 103.523 3.047  -2.134 -0.041 C09  YCE 9  
YCE C11  C9  C 0 1 N N N -0.301 108.028 105.112 1.073  -1.235 1.293  C11  YCE 10 
YCE C14  C10 C 0 1 N N R 1.138  108.262 102.548 -2.391 -0.298 0.147  C14  YCE 11 
YCE N03  N2  N 0 1 N N N -2.220 103.437 107.153 5.050  1.928  -0.127 N03  YCE 12 
YCE N05  N3  N 0 1 N N N -1.099 105.633 107.128 3.028  1.322  0.854  N05  YCE 13 
YCE N08  N4  N 0 1 Y N N -2.053 105.080 103.712 4.206  -1.661 -0.577 N08  YCE 14 
YCE O01  O1  O 0 1 N N N -2.927 102.790 105.189 6.278  0.404  -1.209 O01  YCE 15 
YCE O17  O2  O 0 1 N N N 1.422  107.495 98.755  -4.536 1.831  -0.613 O17  YCE 16 
YCE O18  O3  O 0 1 N N N 0.877  109.727 99.339  -5.239 -0.434 -1.478 O18  YCE 17 
YCE O19  O4  O 0 1 N N N -0.687 108.103 99.877  -6.375 0.637  0.637  O19  YCE 18 
YCE O20  O5  O 0 1 N N N 1.320  109.627 102.800 -2.490 -1.151 -0.995 O20  YCE 19 
YCE P16  P1  P 0 1 N N N 0.759  108.317 99.728  -4.997 0.492  -0.183 P16  YCE 20 
YCE H121 H1  H 0 0 N N N 1.434  107.224 105.734 -0.006 -1.230 -0.460 H121 YCE 21 
YCE H131 H3  H 0 0 N N N 1.306  106.374 103.593 -1.514 -1.865 1.337  H131 YCE 22 
YCE H132 H4  H 0 0 N N N 2.740  107.443 103.751 -1.289 -0.227 1.997  H132 YCE 23 
YCE H152 H5  H 0 0 N N N 1.842  106.730 101.230 -4.031 -1.293 1.127  H152 YCE 24 
YCE H151 H6  H 0 0 N N N 2.748  108.278 101.139 -3.633 0.305  1.801  H151 YCE 25 
YCE H041 H7  H 0 0 N N N -1.375 104.381 108.928 3.778  3.234  0.926  H041 YCE 26 
YCE H091 H8  H 0 0 N N N -1.429 106.769 102.577 2.700  -3.154 -0.107 H091 YCE 27 
YCE H112 H9  H 0 0 N N N -0.618 108.816 104.413 0.880  -2.277 1.546  H112 YCE 28 
YCE H111 H10 H 0 0 N N N -0.577 108.314 106.138 1.105  -0.639 2.206  H111 YCE 29 
YCE H141 H11 H 0 0 N N N 0.057  108.073 102.470 -2.136 0.712  -0.175 H141 YCE 30 
YCE H031 H12 H 0 0 N N N -2.551 102.620 107.626 5.699  2.625  -0.311 H031 YCE 31 
YCE H081 H13 H 0 0 N N N -2.477 104.512 103.006 4.854  -2.185 -1.073 H081 YCE 32 
YCE H2   H14 H 0 1 N N N 1.366  109.792 98.527  -5.543 -1.328 -1.271 H2   YCE 33 
YCE H3   H15 H 0 1 N N N -0.970 107.422 99.278  -7.095 1.038  0.130  H3   YCE 34 
YCE H201 H16 H 0 0 N N N 0.924  109.851 103.634 -2.716 -2.068 -0.783 H201 YCE 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YCE O17 P16  DOUB N N 1  
YCE O18 P16  SING N N 2  
YCE P16 O19  SING N N 3  
YCE P16 C15  SING N N 4  
YCE C15 C14  SING N N 5  
YCE C14 O20  SING N N 6  
YCE C14 C13  SING N N 7  
YCE C09 N08  SING Y N 8  
YCE C09 C10  DOUB Y N 9  
YCE N08 C07  SING Y N 10 
YCE C13 N12  SING N N 11 
YCE C10 C11  SING N N 12 
YCE C10 C06  SING Y N 13 
YCE C07 C06  DOUB Y N 14 
YCE C07 C02  SING N N 15 
YCE N12 C11  SING N N 16 
YCE O01 C02  DOUB N N 17 
YCE C06 N05  SING N N 18 
YCE C02 N03  SING N N 19 
YCE N05 C04  DOUB N N 20 
YCE N03 C04  SING N N 21 
YCE N12 H121 SING N N 22 
YCE C13 H131 SING N N 23 
YCE C13 H132 SING N N 24 
YCE C15 H152 SING N N 25 
YCE C15 H151 SING N N 26 
YCE C04 H041 SING N N 27 
YCE C09 H091 SING N N 28 
YCE C11 H112 SING N N 29 
YCE C11 H111 SING N N 30 
YCE C14 H141 SING N N 31 
YCE N03 H031 SING N N 32 
YCE N08 H081 SING N N 33 
YCE O18 H2   SING N N 34 
YCE O19 H3   SING N N 35 
YCE O20 H201 SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YCE SMILES           ACDLabs              12.01 "O=P(O)(O)CC(O)CNCc1c[NH]c2c1N=CNC2=O"                                                                                                      
YCE InChI            InChI                1.06  "InChI=1S/C10H15N4O5P/c15-7(4-20(17,18)19)3-11-1-6-2-12-9-8(6)13-5-14-10(9)16/h2,5,7,11-12,15H,1,3-4H2,(H,13,14,16)(H2,17,18,19)/t7-/m1/s1" 
YCE InChIKey         InChI                1.06  GLYTVTTVHOOYFN-SSDOTTSWSA-N                                                                                                                 
YCE SMILES_CANONICAL CACTVS               3.385 "O[C@H](CNCc1c[nH]c2C(=O)NC=Nc12)C[P](O)(O)=O"                                                                                              
YCE SMILES           CACTVS               3.385 "O[CH](CNCc1c[nH]c2C(=O)NC=Nc12)C[P](O)(O)=O"                                                                                               
YCE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c2c([nH]1)C(=O)NC=N2)CNC[C@H](CP(=O)(O)O)O"                                                                                            
YCE SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(c2c([nH]1)C(=O)NC=N2)CNCC(CP(=O)(O)O)O"                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YCE "SYSTEMATIC NAME" ACDLabs              12.01 "[(2R)-2-hydroxy-3-{[(4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]amino}propyl]phosphonic acid"         
YCE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R})-2-oxidanyl-3-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)methylamino]propyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YCE "Create component" 2023-01-24 RCSB 
YCE "Initial release"  2023-07-19 RCSB 
# 
