data_RYE
#

_chem_comp.id                                   RYE
_chem_comp.name                                 "hydrolyzed ceftazidime"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H25 N6 O8 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2R)-2-[(1R)-1-[[(2Z)-2-(2-azanyl-1,3-thiazol-4-yl)-2-(2-methyl-1-oxidanyl-1-oxidanylidene-propan-2-yl)oxyimino-ethanoyl]amino]-2-oxidanyl-2-oxidanylidene-ethyl]-5-(pyridin-1-ium-1-ylmethyl)-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2020-11-03
_chem_comp.pdbx_modified_date                   2020-12-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       565.599
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RYE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7ASS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RYE  C       C1   C  0  1  N  N  N  36.574  -68.957  31.784  -0.294  -1.431  -1.299  C       RYE   1  
RYE  S1      S1   S  0  1  N  N  N  34.861  -72.544  32.080  -1.831   0.973  -0.107  S1      RYE   2  
RYE  C2      C2   C  0  1  N  N  N  34.710  -73.371  33.604  -3.352   1.336   0.820  C2      RYE   3  
RYE  C3      C3   C  0  1  N  N  N  35.805  -73.226  34.447  -4.098   0.058   1.074  C3      RYE   4  
RYE  C4      C4   C  0  1  N  N  N  37.142  -72.356  33.875  -3.579  -1.147   1.060  C4      RYE   5  
RYE  N5      N1   N  0  1  N  N  N  36.661  -71.044  33.393  -2.260  -1.491   0.794  N5      RYE   6  
RYE  C6      C5   C  0  1  N  N  R  35.378  -71.107  32.431  -1.198  -0.474   0.803  C6      RYE   7  
RYE  CA      C6   C  0  1  N  N  R  35.950  -70.236  31.253   0.052  -1.020   0.109  CA      RYE   8  
RYE  N10     N2   N  0  1  N  N  N  36.945  -71.031  30.650   1.084   0.019   0.075  N10     RYE   9  
RYE  C11     C7   C  0  1  N  N  N  37.134  -70.907  29.231   2.385  -0.326  -0.005  C11     RYE  10  
RYE  O12     O1   O  0  1  N  N  N  36.521  -70.182  28.582   2.697  -1.493  -0.144  O12     RYE  11  
RYE  C13     C8   C  0  1  N  N  N  38.147  -71.675  28.497   3.434   0.717   0.074  C13     RYE  12  
RYE  C14     C9   C  0  1  Y  N  N  39.460  -71.009  28.286   3.055   2.145   0.124  C14     RYE  13  
RYE  C15     C10  C  0  1  Y  N  N  39.910  -69.664  28.576   3.966   3.137   0.071  C15     RYE  14  
RYE  N16     N3   N  0  1  N  N  N  37.877  -72.712  27.944   4.692   0.375   0.101  N16     RYE  15  
RYE  S16     S2   S  0  1  Y  N  N  41.354  -69.597  28.150   3.113   4.676   0.158  S16     RYE  16  
RYE  C17     C11  C  0  1  Y  N  N  41.726  -71.015  27.591   1.576   3.823   0.259  C17     RYE  17  
RYE  O17     O2   O  0  1  N  N  N  36.824  -73.406  28.440   5.060  -0.982  -0.063  O17     RYE  18  
RYE  C18     C12  C  0  1  N  N  N  36.202  -74.185  27.443   6.470  -1.212  -0.012  C18     RYE  19  
RYE  N18     N4   N  0  1  N  N  N  43.057  -71.268  27.108   0.333   4.426   0.361  N18     RYE  20  
RYE  C19     C13  C  0  1  N  N  N  34.752  -74.571  27.886   7.156  -0.420  -1.128  C19     RYE  21  
RYE  N19     N5   N  0  1  Y  N  N  40.594  -71.839  27.680   1.786   2.545   0.219  N19     RYE  22  
RYE  C20     C14  C  0  1  N  N  N  36.120  -73.514  26.052   7.012  -0.757   1.344  C20     RYE  23  
RYE  C21     C15  C  0  1  N  N  N  37.160  -75.395  27.313   6.746  -2.682  -0.197  C21     RYE  24  
RYE  O2A     O3   O  0  1  N  N  N  37.607  -75.828  26.185   5.830  -3.454  -0.355  O2A     RYE  25  
RYE  O2B     O4   O  0  1  N  N  N  37.498  -75.955  28.401   8.010  -3.134  -0.185  O2B     RYE  26  
RYE  "C3'"   C16  C  0  1  N  N  N  36.232  -74.317  35.359  -5.571   0.169   1.373  "C3'"   RYE  27  
RYE  "C4'"   C17  C  0  1  N  N  N  38.286  -72.176  34.799  -4.499  -2.261   1.359  "C4'"   RYE  28  
RYE  O4A     O5   O  0  1  N  N  N  39.416  -72.310  34.413  -4.889  -2.984   0.464  O4A     RYE  29  
RYE  O4B     O6   O  0  1  N  N  N  38.117  -71.902  35.968  -4.907  -2.476   2.625  O4B     RYE  30  
RYE  N6      N6   N  1  1  Y  N  N  35.150  -75.259  35.514  -6.320   0.248   0.116  N6      RYE  31  
RYE  C26     C18  C  0  1  Y  N  N  33.998  -74.848  36.099  -6.850  -0.850  -0.385  C26     RYE  32  
RYE  C25     C19  C  0  1  Y  N  N  32.960  -75.749  36.247  -7.563  -0.814  -1.569  C25     RYE  33  
RYE  C24     C20  C  0  1  Y  N  N  33.110  -77.022  35.807  -7.717   0.396  -2.228  C24     RYE  34  
RYE  C23     C21  C  0  1  Y  N  N  34.264  -77.424  35.222  -7.146   1.529  -1.670  C23     RYE  35  
RYE  C22     C22  C  0  1  Y  N  N  35.307  -76.530  35.070  -6.451   1.417  -0.481  C22     RYE  36  
RYE  OB      O7   O  0  1  N  N  N  35.915  -68.284  32.624   0.265  -0.910  -2.235  OB      RYE  37  
RYE  OA      O8   O  0  1  N  N  N  37.719  -68.468  31.465  -1.219  -2.380  -1.513  OA      RYE  38  
RYE  H2A     H1   H  0  1  N  N  N  33.823  -72.978  34.122  -3.096   1.803   1.770  H2A     RYE  39  
RYE  H2      H2   H  0  1  N  N  N  34.572  -74.443  33.401  -3.979   2.013   0.239  H2      RYE  40  
RYE  HN5     H6   H  0  1  N  N  N  36.425  -70.488  34.190  -2.036  -2.415   0.600  HN5     RYE  41  
RYE  H6      H7   H  0  1  N  N  N  34.562  -70.549  32.913  -0.962  -0.193   1.829  H6      RYE  42  
RYE  HA      H8   H  0  1  N  N  N  35.139  -69.996  30.550   0.424  -1.885   0.659  HA      RYE  43  
RYE  HN10    H9   H  0  0  N  N  N  37.501  -71.661  31.192   0.832   0.955   0.111  HN10    RYE  44  
RYE  H15     H11  H  0  1  N  N  N  39.326  -68.866  29.011   5.036   3.010  -0.009  H15     RYE  45  
RYE  HN18    H13  H  0  0  N  N  N  43.609  -70.439  27.201   0.264   5.393   0.381  HN18    RYE  46  
RYE  H8      H14  H  0  1  N  N  N  43.470  -72.006  27.642  -0.467   3.881   0.412  H8      RYE  47  
RYE  H19A    H16  H  0  0  N  N  N  34.278  -75.178  27.101   6.956   0.643  -0.994  H19A    RYE  48  
RYE  H19     H17  H  0  1  N  N  N  34.796  -75.150  28.820   8.231  -0.595  -1.089  H19     RYE  49  
RYE  H19B    H18  H  0  0  N  N  N  34.163  -73.656  28.049   6.769  -0.744  -2.094  H19B    RYE  50  
RYE  H20     H21  H  0  1  N  N  N  35.622  -74.194  25.345   6.523  -1.321   2.138  H20     RYE  51  
RYE  H20B    H22  H  0  0  N  N  N  35.545  -72.580  26.129   8.087  -0.932   1.383  H20B    RYE  52  
RYE  H20A    H23  H  0  0  N  N  N  37.135  -73.291  25.692   6.812   0.306   1.477  H20A    RYE  53  
RYE  H11     H24  H  0  1  N  N  N  38.085  -76.679  28.216   8.137  -4.084  -0.307  H11     RYE  54  
RYE  "H3'A"  H25  H  0  0  N  N  N  37.108  -74.830  34.934  -5.895  -0.707   1.934  "H3'A"  RYE  55  
RYE  "H3'"   H26  H  0  1  N  N  N  36.495  -73.894  36.340  -5.756   1.067   1.963  "H3'"   RYE  56  
RYE  H12     H27  H  0  1  N  N  N  38.959  -71.837  36.403  -5.509  -3.218   2.772  H12     RYE  57  
RYE  H26     H28  H  0  1  N  N  N  33.893  -73.830  36.445  -6.726  -1.788   0.134  H26     RYE  58  
RYE  H25     H29  H  0  1  N  N  N  32.035  -75.440  36.711  -7.994  -1.717  -1.975  H25     RYE  59  
RYE  H24     H30  H  0  1  N  N  N  32.299  -77.725  35.924  -8.269   0.454  -3.155  H24     RYE  60  
RYE  H23     H31  H  0  1  N  N  N  34.369  -78.441  34.875  -7.246   2.488  -2.157  H23     RYE  61  
RYE  H22     H32  H  0  1  N  N  N  36.232  -76.839  34.605  -6.006   2.295  -0.037  H22     RYE  62  
RYE  H13     H33  H  0  1  N  N  N  37.862  -67.658  31.940  -1.406  -2.610  -2.434  H13     RYE  63  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RYE  C      CA      SING  N  N   1  
RYE  C      OB      DOUB  N  N   2  
RYE  C      OA      SING  N  N   3  
RYE  S1     C2      SING  N  N   4  
RYE  S1     C6      SING  N  N   5  
RYE  C2     C3      SING  N  N   6  
RYE  C3     C4      DOUB  N  N   7  
RYE  C3     "C3'"   SING  N  N   8  
RYE  C4     N5      SING  N  N   9  
RYE  C4     "C4'"   SING  N  N  10  
RYE  N5     C6      SING  N  N  11  
RYE  C6     CA      SING  N  N  12  
RYE  CA     N10     SING  N  N  13  
RYE  N10    C11     SING  N  N  14  
RYE  C11    O12     DOUB  N  N  15  
RYE  C11    C13     SING  N  N  16  
RYE  C13    C14     SING  N  N  17  
RYE  C13    N16     DOUB  N  Z  18  
RYE  C14    C15     DOUB  Y  N  19  
RYE  C14    N19     SING  Y  N  20  
RYE  C15    S16     SING  Y  N  21  
RYE  N16    O17     SING  N  N  22  
RYE  S16    C17     SING  Y  N  23  
RYE  C17    N18     SING  N  N  24  
RYE  C17    N19     DOUB  Y  N  25  
RYE  O17    C18     SING  N  N  26  
RYE  C18    C19     SING  N  N  27  
RYE  C18    C20     SING  N  N  28  
RYE  C18    C21     SING  N  N  29  
RYE  C21    O2A     DOUB  N  N  30  
RYE  C21    O2B     SING  N  N  31  
RYE  "C3'"  N6      SING  N  N  32  
RYE  "C4'"  O4A     DOUB  N  N  33  
RYE  "C4'"  O4B     SING  N  N  34  
RYE  N6     C26     DOUB  Y  N  35  
RYE  N6     C22     SING  Y  N  36  
RYE  C26    C25     SING  Y  N  37  
RYE  C25    C24     DOUB  Y  N  38  
RYE  C24    C23     SING  Y  N  39  
RYE  C23    C22     DOUB  Y  N  40  
RYE  C2     H2A     SING  N  N  41  
RYE  C2     H2      SING  N  N  42  
RYE  N5     HN5     SING  N  N  43  
RYE  C6     H6      SING  N  N  44  
RYE  CA     HA      SING  N  N  45  
RYE  N10    HN10    SING  N  N  46  
RYE  C15    H15     SING  N  N  47  
RYE  N18    HN18    SING  N  N  48  
RYE  N18    H8      SING  N  N  49  
RYE  C19    H19A    SING  N  N  50  
RYE  C19    H19     SING  N  N  51  
RYE  C19    H19B    SING  N  N  52  
RYE  C20    H20     SING  N  N  53  
RYE  C20    H20B    SING  N  N  54  
RYE  C20    H20A    SING  N  N  55  
RYE  O2B    H11     SING  N  N  56  
RYE  "C3'"  "H3'A"  SING  N  N  57  
RYE  "C3'"  "H3'"   SING  N  N  58  
RYE  O4B    H12     SING  N  N  59  
RYE  C26    H26     SING  N  N  60  
RYE  C25    H25     SING  N  N  61  
RYE  C24    H24     SING  N  N  62  
RYE  C23    H23     SING  N  N  63  
RYE  C22    H22     SING  N  N  64  
RYE  OA     H13     SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RYE  InChI             InChI                 1.03   "InChI=1S/C22H24N6O8S2/c1-22(2,20(34)35)36-27-14(12-10-38-21(23)24-12)16(29)25-15(19(32)33)17-26-13(18(30)31)11(9-37-17)8-28-6-4-3-5-7-28/h3-7,10,15,17,26H,8-9H2,1-2H3,(H5-,23,24,25,29,30,31,32,33,34,35)/p+1/b27-14-/t15-,17+/m0/s1"  
RYE  InChIKey          InChI                 1.03   ZFKSAQZBKJRFHB-NUYJMBSPSA-O  
RYE  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(O\N=C(/C(=O)N[C@@H]([C@@H]1NC(=C(CS1)C[n+]2ccccc2)C(O)=O)C(O)=O)c3csc(N)n3)C(O)=O"  
RYE  SMILES            CACTVS                3.385  "CC(C)(ON=C(C(=O)N[CH]([CH]1NC(=C(CS1)C[n+]2ccccc2)C(O)=O)C(O)=O)c3csc(N)n3)C(O)=O"  
RYE  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C(=O)O)O/N=C(/c1csc(n1)N)\C(=O)N[C@@H]([C@@H]2NC(=C(CS2)C[n+]3ccccc3)C(=O)O)C(=O)O"  
RYE  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C(=O)O)ON=C(c1csc(n1)N)C(=O)NC(C2NC(=C(CS2)C[n+]3ccccc3)C(=O)O)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          RYE
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R})-2-[(1~{R})-1-[[(2~{Z})-2-(2-azanyl-1,3-thiazol-4-yl)-2-(2-methyl-1-oxidanyl-1-oxidanylidene-propan-2-yl)oxyimino-ethanoyl]amino]-2-oxidanyl-2-oxidanylidene-ethyl]-5-(pyridin-1-ium-1-ylmethyl)-3,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     RYE
_pdbx_chem_comp_synonyms.name        "(2R)-2-[(1R)-1-[[(2Z)-2-(2-azanyl-1,3-thiazol-4-yl)-2-(2-methyl-1-oxidanyl-1-oxidanylidene-propan-2-yl)oxyimino-ethanoyl]amino]-2-oxidanyl-2-oxidanylidene-ethyl]-5-(pyridin-1-ium-1-ylmethyl)-3,6-dihydro-2H-1,3-thiazine-4-carboxylic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RYE  "Create component"  2020-11-03  PDBE  
RYE  "Modify synonyms"   2020-11-06  PDBE  
RYE  "Initial release"   2020-12-16  RCSB  
##
