data_OOE
#

_chem_comp.id                                   OOE
_chem_comp.name                                 "2',2'-difluoro-3',3'-cGAMP"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H22 F2 N10 O11 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-
3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]-2-azan
yl-1~{H}-purin-6-one
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-24
_chem_comp.pdbx_modified_date                   2021-03-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       678.393
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    OOE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YEA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OOE  N     N1   N  0  1  Y  N  N  -13.387  20.090   -8.448  -10.180   0.500   0.795  N     OOE   1  
OOE  C     C1   C  0  1  Y  N  N  -13.637  21.399   -8.659   -9.528   1.155  -0.148  C     OOE   2  
OOE  O     O1   O  0  1  N  N  N  -21.468  18.591   -6.325    0.626  -2.436   1.063  O     OOE   3  
OOE  N11   N2   N  0  1  N  N  N  -14.017  17.953   -7.665  -10.290  -1.158   2.468  111   OOE   4  
OOE  C1    C2   C  0  1  Y  N  N  -15.796  21.267   -7.720   -7.614  -0.076   0.172  C1    OOE   5  
OOE  C10   C3   C  0  1  N  N  N  -21.149  13.620   -9.387    9.046  -1.082   0.011  C10   OOE   6  
OOE  C11   C4   C  0  1  Y  N  N  -21.150  15.843  -10.189    7.143   0.205   0.256  C11   OOE   7  
OOE  C12   C5   C  0  1  Y  N  N  -19.711  15.726  -10.446    7.782   0.990   1.222  C12   OOE   8  
OOE  C13   C6   C  0  1  N  N  N  -19.067  14.434  -10.112    9.122   0.688   1.562  C13   OOE   9  
OOE  C14   C7   C  0  1  Y  N  N  -20.402  17.721  -11.024    5.774   1.771   0.985  C14   OOE  10  
OOE  C15   C8   C  0  1  N  N  R  -22.664  19.393   -8.827    2.585  -0.571  -0.255  C15   OOE  11  
OOE  C16   C9   C  0  1  N  N  R  -23.183  17.966   -9.017    4.075  -0.931  -0.102  C16   OOE  12  
OOE  C17   C10  C  0  1  N  N  R  -22.860  17.643  -10.476    4.834   0.223  -0.774  C17   OOE  13  
OOE  C18   C11  C  0  1  N  N  R  -23.072  20.013  -10.171    2.573   0.731  -1.071  C18   OOE  14  
OOE  C19   C12  C  0  1  N  N  N  -22.326  21.238  -10.677    1.597   1.728  -0.445  C19   OOE  15  
OOE  C2    C13  C  0  1  Y  N  N  -15.593  19.839   -7.460   -8.264  -0.803   1.184  C2    OOE  16  
OOE  C3    C14  C  0  1  Y  N  N  -14.291  19.264   -7.868   -9.598  -0.477   1.482  C3    OOE  17  
OOE  C4    C15  C  0  1  Y  N  N  -17.582  20.437   -6.770   -6.249  -1.586   1.020  C4    OOE  18  
OOE  C5    C16  C  0  1  N  N  R  -19.434  22.684   -8.959   -3.049   0.674  -0.326  C5    OOE  19  
OOE  C6    C17  C  0  1  N  N  R  -18.009  23.218   -8.801   -4.541   1.042  -0.223  C6    OOE  20  
OOE  C7    C18  C  0  1  N  N  R  -17.644  22.897   -7.351   -5.289  -0.157  -0.825  C7    OOE  21  
OOE  C8    C19  C  0  1  N  N  R  -20.023  23.055   -7.591   -3.023  -0.677  -1.059  C8    OOE  22  
OOE  C9    C20  C  0  1  N  N  N  -21.223  22.273   -7.081   -2.054  -1.630  -0.357  C9    OOE  23  
OOE  F6    F1   F  0  1  N  N  N  -24.529  17.972   -8.802    4.352  -2.139  -0.752  F6    OOE  24  
OOE  F9    F2   F  0  1  N  N  N  -18.040  24.566   -9.003   -4.808   2.202  -0.958  F9    OOE  25  
OOE  N1    N3   N  0  1  Y  N  N  -14.803  21.979   -8.311   -8.278   0.885  -0.462  N1    OOE  26  
OOE  N2    N4   N  0  1  Y  N  N  -17.026  21.552   -7.277   -6.346  -0.593   0.091  N2    OOE  27  
OOE  N21   N5   N  0  1  N  N  N  -21.924  12.483   -8.817    9.682  -2.131  -0.604  N21   OOE  28  
OOE  N3    N6   N  0  1  Y  N  N  -16.722  19.391   -6.877   -7.376  -1.708   1.660  N3    OOE  29  
OOE  N4    N7   N  0  1  N  N  N  -19.827  13.456   -9.600    9.723  -0.350   0.940  N4    OOE  30  
OOE  N5    N8   N  0  1  N  N  N  -21.808  14.777   -9.669    7.803  -0.808  -0.317  N5    OOE  31  
OOE  N6    N9   N  0  1  Y  N  N  -21.492  17.082  -10.565    5.881   0.717   0.125  N6    OOE  32  
OOE  N7    N10  N  0  1  Y  N  N  -19.316  16.909  -10.955    6.894   1.929   1.629  N7    OOE  33  
OOE  O1    O2   O  0  1  N  N  N  -18.902  23.006   -6.662   -4.348  -1.215  -1.017  O1    OOE  34  
OOE  O10   O3   O  0  1  N  N  N  -20.076  23.198  -10.104   -2.343   1.661  -1.080  O10   OOE  35  
OOE  O2    O4   O  0  1  N  N  N  -20.855  20.946   -6.803   -0.717  -1.340  -0.771  O2    OOE  36  
OOE  O22   O5   O  0  1  N  N  N  -18.649  21.515  -11.460   -1.106   2.616   1.035  O22   OOE  37  
OOE  O3    O6   O  0  1  N  N  N  -22.760  20.428   -5.235    0.343  -3.725  -1.089  O3    OOE  38  
OOE  O4    O7   O  0  1  N  N  N  -20.488  22.814  -12.541   -0.816   3.664  -1.243  O4    OOE  39  
OOE  O5    O8   O  0  1  N  N  N  -23.015  18.916  -11.130    3.898   1.268  -1.045  O5    OOE  40  
OOE  O7    O9   O  0  1  N  N  N  -23.174  20.002   -7.663    1.892  -1.604  -0.956  O7    OOE  41  
OOE  O8    O10  O  0  1  N  N  N  -21.002  20.892  -10.993    0.266   1.416  -0.861  O8    OOE  42  
OOE  O9    O11  O  0  1  N  N  N  -17.845  14.264  -10.303    9.718   1.346   2.398  O9    OOE  43  
OOE  P     P1   P  0  1  N  N  N  -22.073  19.964   -6.484    0.538  -2.280  -0.406  P     OOE  44  
OOE  P1    P2   P  0  1  N  N  N  -20.024  22.115  -11.299   -0.996   2.368  -0.552  P1    OOE  45  
OOE  H     H1   H  0  1  N  N  N  -12.874  22.005   -9.124  -10.039   1.942  -0.683  H     OOE  46  
OOE  H111  H2   H  0  0  N  N  N  -13.098  17.748   -8.001  -11.211  -0.924   2.665  H111  OOE  47  
OOE  H1    H3   H  0  1  N  N  N  -14.067  17.750   -6.687   -9.854  -1.870   2.963  H1    OOE  48  
OOE  H14   H4   H  0  1  N  N  N  -20.392  18.735  -11.395    4.893   2.382   1.112  H14   OOE  49  
OOE  H15   H5   H  0  1  N  N  N  -21.565  19.359   -8.782    2.133  -0.407   0.723  H15   OOE  50  
OOE  H16   H6   H  0  1  N  N  N  -22.648  17.276   -8.348    4.342  -0.999   0.952  H16   OOE  51  
OOE  H17   H7   H  0  1  N  N  N  -23.592  16.917  -10.861    5.282  -0.123  -1.706  H17   OOE  52  
OOE  H18   H8   H  0  1  N  N  N  -24.127  20.307  -10.071    2.281   0.521  -2.100  H18   OOE  53  
OOE  H192  H9   H  0  0  N  N  N  -22.325  22.013   -9.896    1.662   1.667   0.641  H192  OOE  54  
OOE  H191  H10  H  0  0  N  N  N  -22.827  21.625  -11.577    1.851   2.737  -0.769  H191  OOE  55  
OOE  H4    H11  H  0  1  N  N  N  -18.571  20.381   -6.339   -5.368  -2.184   1.197  H4    OOE  56  
OOE  H5    H12  H  0  1  N  N  N  -19.383  21.587   -9.022   -2.613   0.573   0.667  H5    OOE  57  
OOE  H6    H13  H  0  1  N  N  N  -17.328  22.697   -9.490   -4.825   1.181   0.821  H6    OOE  58  
OOE  H7    H14  H  0  1  N  N  N  -16.936  23.653   -6.981   -5.726   0.125  -1.783  H7    OOE  59  
OOE  H8    H15  H  0  1  N  N  N  -20.341  24.105   -7.664   -2.717  -0.533  -2.094  H8    OOE  60  
OOE  H92   H16  H  0  1  N  N  N  -21.601  22.745   -6.162   -2.136  -1.502   0.722  H92   OOE  61  
OOE  H91   H17  H  0  1  N  N  N  -22.012  22.278   -7.847   -2.301  -2.659  -0.621  H91   OOE  62  
OOE  HN22  H18  H  0  0  N  N  N  -22.905  12.580   -8.650   10.601  -2.342  -0.375  HN22  OOE  63  
OOE  HN23  H19  H  0  0  N  N  N  -21.463  11.622   -8.601    9.213  -2.661  -1.267  HN23  OOE  64  
OOE  HN4   H20  H  0  1  N  N  N  -19.402  12.580   -9.369   10.641  -0.576   1.157  HN4   OOE  65  
OOE  H2    H21  H  0  1  N  N  N  -18.325  21.694  -12.335   -0.327   3.039   1.421  H2    OOE  66  
OOE  H3    H22  H  0  1  N  N  N  -22.685  19.759   -4.565   -0.455  -4.191  -0.803  H3    OOE  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OOE  O4   P1    DOUB  N  N   1  
OOE  O22  P1    SING  N  N   2  
OOE  P1   O8    SING  N  N   3  
OOE  P1   O10   SING  N  N   4  
OOE  O5   C17   SING  N  N   5  
OOE  O5   C18   SING  N  N   6  
OOE  C14  N7    DOUB  Y  N   7  
OOE  C14  N6    SING  Y  N   8  
OOE  O8   C19   SING  N  N   9  
OOE  N7   C12   SING  Y  N  10  
OOE  C19  C18   SING  N  N  11  
OOE  N6   C17   SING  N  N  12  
OOE  N6   C11   SING  Y  N  13  
OOE  C17  C16   SING  N  N  14  
OOE  C12  C11   DOUB  Y  N  15  
OOE  C12  C13   SING  N  N  16  
OOE  O9   C13   DOUB  N  N  17  
OOE  C11  N5    SING  N  N  18  
OOE  C18  C15   SING  N  N  19  
OOE  C13  N4    SING  N  N  20  
OOE  O10  C5    SING  N  N  21  
OOE  N5   C10   DOUB  N  N  22  
OOE  N4   C10   SING  N  N  23  
OOE  C10  N21   SING  N  N  24  
OOE  C16  C15   SING  N  N  25  
OOE  C16  F6    SING  N  N  26  
OOE  F9   C6    SING  N  N  27  
OOE  C5   C6    SING  N  N  28  
OOE  C5   C8    SING  N  N  29  
OOE  C15  O7    SING  N  N  30  
OOE  C6   C7    SING  N  N  31  
OOE  C    N     DOUB  Y  N  32  
OOE  C    N1    SING  Y  N  33  
OOE  N    C3    SING  Y  N  34  
OOE  N1   C1    DOUB  Y  N  35  
OOE  C3   N11   SING  N  N  36  
OOE  C3   C2    DOUB  Y  N  37  
OOE  C1   C2    SING  Y  N  38  
OOE  C1   N2    SING  Y  N  39  
OOE  O7   P     SING  N  N  40  
OOE  C8   C9    SING  N  N  41  
OOE  C8   O1    SING  N  N  42  
OOE  C2   N3    SING  Y  N  43  
OOE  C7   N2    SING  N  N  44  
OOE  C7   O1    SING  N  N  45  
OOE  N2   C4    SING  Y  N  46  
OOE  C9   O2    SING  N  N  47  
OOE  N3   C4    DOUB  Y  N  48  
OOE  O2   P     SING  N  N  49  
OOE  P    O     DOUB  N  N  50  
OOE  P    O3    SING  N  N  51  
OOE  C    H     SING  N  N  52  
OOE  N11  H111  SING  N  N  53  
OOE  N11  H1    SING  N  N  54  
OOE  C14  H14   SING  N  N  55  
OOE  C15  H15   SING  N  N  56  
OOE  C16  H16   SING  N  N  57  
OOE  C17  H17   SING  N  N  58  
OOE  C18  H18   SING  N  N  59  
OOE  C19  H192  SING  N  N  60  
OOE  C19  H191  SING  N  N  61  
OOE  C4   H4    SING  N  N  62  
OOE  C5   H5    SING  N  N  63  
OOE  C6   H6    SING  N  N  64  
OOE  C7   H7    SING  N  N  65  
OOE  C8   H8    SING  N  N  66  
OOE  C9   H92   SING  N  N  67  
OOE  C9   H91   SING  N  N  68  
OOE  N21  HN22  SING  N  N  69  
OOE  N21  HN23  SING  N  N  70  
OOE  N4   HN4   SING  N  N  71  
OOE  O22  H2    SING  N  N  72  
OOE  O3   H3    SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OOE  InChI             InChI                 1.03   "InChI=1S/C20H22F2N10O11P2/c21-8-12-6(40-18(8)31-4-27-10-14(23)25-3-26-15(10)31)1-38-45(36,37)43-13-7(2-39-44(34,35)42-12)41-19(9(13)22)32-5-28-11-16(32)29-20(24)30-17(11)33/h3-9,12-13,18-19H,1-2H2,(H,34,35)(H,36,37)(H2,23,25,26)(H3,24,29,30,33)/t6-,7-,8-,9-,12-,13-,18-,19-/m1/s1"  
OOE  InChIKey          InChI                 1.03   BFQVZDRNJPTWKS-ZVCHIEIFSA-N  
OOE  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@H]4[C@H]3F)n6cnc7c(N)ncnc67"  
OOE  SMILES            CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](O)(=O)O[CH]4[CH]3F)n6cnc7c(N)ncnc67"  
OOE  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@@H](COP(=O)(O4)O)O[C@H]([C@@H]5F)n6cnc7c6N=C(NC7=O)N)O)F)N"  
OOE  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(COP(=O)(O4)O)OC(C5F)n6cnc7c6N=C(NC7=O)N)O)F)N"  
#
_pdbx_chem_comp_identifier.comp_id          OOE
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]-2-azanyl-1~{H}-purin-6-one"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     OOE
_pdbx_chem_comp_synonyms.name        "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]-2-azanyl-1~{H}-purin-6-one"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OOE  "Create component"  2020-03-24  PDBE  
OOE  "Modify synonyms"   2020-06-05  PDBE  
OOE  "Initial release"   2021-03-31  RCSB  
##
