data_MBE
#

_chem_comp.id                                   MBE
_chem_comp.name                                 "4-nitrophenyl beta-D-mannopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C12 H15 N O8"
_chem_comp.mon_nstd_parent_comp_id              BMA
_chem_comp.pdbx_synonyms                        
;4-Nitrophenyl-beta-D-mannopyranoside; 4-nitrophenyl beta-D-mannoside; 4-nitrophenyl D-mannoside; 4-nitrophenyl
mannoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-07-07
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       301.249
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MBE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5GGK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  MBE  4-Nitrophenyl-beta-D-mannopyranoside    PDB  ?  
2  MBE  "4-nitrophenyl beta-D-mannoside"        PDB  ?  
3  MBE  "4-nitrophenyl D-mannoside"             PDB  ?  
4  MBE  "4-nitrophenyl mannoside"               PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MBE  C1   C1   C   0  1  N  N  S  -26.767  -18.306  -11.049   1.114   0.824  -0.353  C1   MBE   1  
MBE  C2   C2   C   0  1  N  N  S  -27.971  -18.593  -10.161   2.434   1.594  -0.272  C2   MBE   2  
MBE  C3   C3   C   0  1  N  N  S  -27.804  -17.865   -8.837   3.570   0.701  -0.780  C3   MBE   3  
MBE  C4   C4   C   0  1  N  N  S  -26.447  -18.225   -8.216   3.598  -0.589   0.047  C4   MBE   4  
MBE  C5   C5   C   0  1  N  N  R  -25.303  -17.959   -9.203   2.233  -1.275  -0.046  C5   MBE   5  
MBE  C6   C6   C   0  1  N  N  N  -23.945  -18.405   -8.677   2.234  -2.533   0.825  C6   MBE   6  
MBE  C7   C7   C   0  1  Y  N  N  -26.197  -18.850  -13.333  -1.203   1.134   0.079  C7   MBE   7  
MBE  C8   C8   C   0  1  Y  N  N  -25.179  -17.897  -13.336  -2.276   1.865   0.568  C8   MBE   8  
MBE  C9   C9   C   0  1  Y  N  N  -24.500  -17.627  -14.510  -3.557   1.357   0.473  C9   MBE   9  
MBE  C10  C10  C   0  1  Y  N  N  -24.842  -18.324  -15.656  -3.771   0.121  -0.109  C10  MBE  10  
MBE  C11  C11  C   0  1  Y  N  N  -25.844  -19.278  -15.645  -2.703  -0.610  -0.597  C11  MBE  11  
MBE  C12  C12  C   0  1  Y  N  N  -26.532  -19.541  -14.482  -1.421  -0.104  -0.509  C12  MBE  12  
MBE  N1   N1   N   1  1  N  N  N  -24.185  -18.095  -16.859  -5.144  -0.424  -0.204  N1   MBE  13  
MBE  O1   O1   O   0  1  N  N  N  -26.896  -19.136  -12.197   0.058   1.631   0.172  O1   MBE  14  
MBE  O2   O2   O   0  1  N  N  N  -28.073  -20.003   -9.930   2.688   1.966   1.084  O2   MBE  15  
MBE  O3   O3   O   0  1  N  N  N  -28.893  -18.208   -7.970   4.816   1.386  -0.640  O3   MBE  16  
MBE  O4   O4   O   0  1  N  N  N  -26.251  -17.441   -7.029   4.608  -1.462  -0.465  O4   MBE  17  
MBE  O5   O5   O   0  1  N  N  N  -25.546  -18.682  -10.408   1.219  -0.379   0.412  O5   MBE  18  
MBE  O6   O6   O   0  1  N  N  N  -23.912  -19.826   -8.420   1.003  -3.236   0.649  O6   MBE  19  
MBE  O7   O7   O  -1  1  N  N  N  -24.564  -18.815  -17.973  -5.332  -1.515  -0.711  O7   MBE  20  
MBE  O8   O8   O   0  1  N  N  N  -23.150  -17.190  -16.907  -6.085   0.219   0.226  O8   MBE  21  
MBE  H1   H1   H   0  1  N  N  N  -26.756  -17.242  -11.327   0.900   0.576  -1.392  H1   MBE  22  
MBE  H2   H2   H   0  1  N  N  N  -28.879  -18.224  -10.660   2.371   2.491  -0.890  H2   MBE  23  
MBE  H3   H3   H   0  1  N  N  N  -27.816  -16.783   -9.032   3.402   0.458  -1.829  H3   MBE  24  
MBE  H4   H4   H   0  1  N  N  N  -26.450  -19.295   -7.962   3.817  -0.350   1.087  H4   MBE  25  
MBE  H5   H5   H   0  1  N  N  N  -25.264  -16.880   -9.412   2.034  -1.551  -1.082  H5   MBE  26  
MBE  H61  H6   H   0  1  N  N  N  -23.175  -18.160   -9.424   3.065  -3.176   0.534  H61  MBE  27  
MBE  H62  H7   H   0  1  N  N  N  -23.732  -17.868   -7.741   2.344  -2.250   1.872  H62  MBE  28  
MBE  H8   H8   H   0  1  N  N  N  -24.922  -17.373  -12.427  -2.110   2.830   1.023  H8   MBE  29  
MBE  H9   H9   H   0  1  N  N  N  -23.716  -16.885  -14.532  -4.393   1.926   0.853  H9   MBE  30  
MBE  H10  H10  H   0  1  N  N  N  -26.086  -19.817  -16.549  -2.872  -1.575  -1.050  H10  MBE  31  
MBE  H11  H11  H   0  1  N  N  N  -27.322  -20.277  -14.468  -0.587  -0.675  -0.891  H11  MBE  32  
MBE  HO2  H12  H   0  1  N  Y  N  -28.824  -20.180   -9.376   2.005   2.530   1.472  HO2  MBE  33  
MBE  HO3  H13  H   0  1  N  Y  N  -28.793  -17.755   -7.141   4.866   2.216  -1.132  HO3  MBE  34  
MBE  HO4  H14  H   0  1  N  Y  N  -26.960  -17.607   -6.419   5.499  -1.088  -0.441  HO4  MBE  35  
MBE  HO6  H15  H   0  1  N  Y  N  -23.053  -20.069   -8.094   0.933  -4.046   1.172  HO6  MBE  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MBE  O7   N1   SING  N  N   1  
MBE  O8   N1   DOUB  N  N   2  
MBE  N1   C10  SING  N  N   3  
MBE  C10  C11  DOUB  Y  N   4  
MBE  C10  C9   SING  Y  N   5  
MBE  C11  C12  SING  Y  N   6  
MBE  C9   C8   DOUB  Y  N   7  
MBE  C12  C7   DOUB  Y  N   8  
MBE  C8   C7   SING  Y  N   9  
MBE  C7   O1   SING  N  N  10  
MBE  O1   C1   SING  N  N  11  
MBE  C1   O5   SING  N  N  12  
MBE  C1   C2   SING  N  N  13  
MBE  O5   C5   SING  N  N  14  
MBE  C2   O2   SING  N  N  15  
MBE  C2   C3   SING  N  N  16  
MBE  C5   C6   SING  N  N  17  
MBE  C5   C4   SING  N  N  18  
MBE  C3   C4   SING  N  N  19  
MBE  C3   O3   SING  N  N  20  
MBE  C6   O6   SING  N  N  21  
MBE  C4   O4   SING  N  N  22  
MBE  C1   H1   SING  N  N  23  
MBE  C2   H2   SING  N  N  24  
MBE  C3   H3   SING  N  N  25  
MBE  C4   H4   SING  N  N  26  
MBE  C5   H5   SING  N  N  27  
MBE  C6   H61  SING  N  N  28  
MBE  C6   H62  SING  N  N  29  
MBE  C8   H8   SING  N  N  30  
MBE  C9   H9   SING  N  N  31  
MBE  C11  H10  SING  N  N  32  
MBE  C12  H11  SING  N  N  33  
MBE  O2   HO2  SING  N  N  34  
MBE  O3   HO3  SING  N  N  35  
MBE  O4   HO4  SING  N  N  36  
MBE  O6   HO6  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MBE  InChI             InChI                 1.03   "InChI=1S/C12H15NO8/c14-5-8-9(15)10(16)11(17)12(21-8)20-7-3-1-6(2-4-7)13(18)19/h1-4,8-12,14-17H,5H2/t8-,9-,10+,11+,12-/m1/s1"  
MBE  InChIKey          InChI                 1.03   IFBHRQDFSNCLOZ-LDMBFOFVSA-N  
MBE  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@@H](Oc2ccc(cc2)[N+]([O-])=O)[C@@H](O)[C@@H](O)[C@@H]1O"  
MBE  SMILES            CACTVS                3.385  "OC[CH]1O[CH](Oc2ccc(cc2)[N+]([O-])=O)[CH](O)[CH](O)[CH]1O"  
MBE  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "c1cc(ccc1[N+](=O)[O-])O[C@H]2[C@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O"  
MBE  SMILES            "OpenEye OEToolkits"  2.0.5  "c1cc(ccc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          MBE
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{S},5~{S},6~{S})-2-(hydroxymethyl)-6-(4-nitrophenoxy)oxane-3,4,5-triol"
#
_pdbx_chem_comp_related.comp_id            MBE
_pdbx_chem_comp_related.related_comp_id    BMA
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  MBE  C1   BMA  C1   "Carbohydrate core"  
 2  MBE  C2   BMA  C2   "Carbohydrate core"  
 3  MBE  C3   BMA  C3   "Carbohydrate core"  
 4  MBE  C4   BMA  C4   "Carbohydrate core"  
 5  MBE  C5   BMA  C5   "Carbohydrate core"  
 6  MBE  C6   BMA  C6   "Carbohydrate core"  
 7  MBE  O1   BMA  O1   "Carbohydrate core"  
 8  MBE  O2   BMA  O2   "Carbohydrate core"  
 9  MBE  O3   BMA  O3   "Carbohydrate core"  
10  MBE  O4   BMA  O4   "Carbohydrate core"  
11  MBE  O5   BMA  O5   "Carbohydrate core"  
12  MBE  O6   BMA  O6   "Carbohydrate core"  
13  MBE  H1   BMA  H1   "Carbohydrate core"  
14  MBE  HO2  BMA  HO2  "Carbohydrate core"  
15  MBE  HO3  BMA  HO3  "Carbohydrate core"  
16  MBE  HO4  BMA  HO4  "Carbohydrate core"  
17  MBE  HO6  BMA  HO6  "Carbohydrate core"  
18  MBE  H2   BMA  H2   "Carbohydrate core"  
19  MBE  H3   BMA  H3   "Carbohydrate core"  
20  MBE  H4   BMA  H4   "Carbohydrate core"  
21  MBE  H5   BMA  H5   "Carbohydrate core"  
22  MBE  H61  BMA  H61  "Carbohydrate core"  
23  MBE  H62  BMA  H62  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
MBE  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
MBE  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
MBE  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
MBE  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MBE  "Create component"          2016-07-07  RCSB  
MBE  "Initial release"           2016-08-10  RCSB  
MBE  "Other modification"        2020-07-03  RCSB  
MBE  "Modify parent residue"     2020-07-17  RCSB  
MBE  "Modify name"               2020-07-17  RCSB  
MBE  "Modify synonyms"           2020-07-17  RCSB  
MBE  "Modify atom id"            2020-07-17  RCSB  
MBE  "Modify component atom id"  2020-07-17  RCSB  
MBE  "Modify leaving atom flag"  2020-07-17  RCSB  
##
