data_LSE
#

_chem_comp.id                                   LSE
_chem_comp.name                                 "2-(trimethylsilyl)ethyl 4-O-beta-D-galactopyranosyl-6-Se-methyl-6-seleno-beta-D-glucopyranoside"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H36 O10 Se Si"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-12-03
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       519.518
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LSE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3WLU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LSE  O4   O4    O   0  1  N  N  N  42.058   3.685  163.849  -0.548   3.468  -0.752  O4    LSE   1  
LSE  C9   C9    C   0  1  N  N  R  43.271   4.172  163.337  -0.382   2.207  -0.101  C9    LSE   2  
LSE  C10  C10   C   0  1  N  N  R  43.114   4.529  161.837   0.879   1.518  -0.631  C10   LSE   3  
LSE  O3   O3    O   0  1  N  N  N  42.180   5.599  161.664   2.026   2.305  -0.305  O3    LSE   4  
LSE  C8   C8    C   0  1  N  N  R  44.340   3.080  163.517  -1.597   1.320  -0.387  C8    LSE   5  
LSE  O5   O5    O   0  1  N  N  N  44.684   2.876  164.849  -2.770   1.930   0.154  O5    LSE   6  
LSE  C13  C13   C   0  1  N  N  N  45.211   1.509  164.999  -3.981   1.237  -0.156  C13   LSE   7  
LSE  C14  C14   C   0  1  N  N  N  45.639   1.292  166.381  -5.166   1.975   0.471  C14   LSE   8  
LSE  SI   SI15  SI  0  0  N  N  N  46.155  -0.495  166.747  -6.744   1.072   0.067  SI15  LSE   9  
LSE  C18  C18   C   0  1  N  N  N  46.570  -0.676  168.520  -6.661  -0.660   0.748  C18   LSE  10  
LSE  C17  C17   C   0  1  N  N  N  44.799  -1.663  166.477  -8.187   1.970   0.831  C17   LSE  11  
LSE  C16  C16   C   0  1  N  N  N  47.558  -1.004  165.626  -6.964   1.003  -1.782  C16   LSE  12  
LSE  O2   O2    O   0  1  N  N  N  45.534   3.544  162.955  -1.403   0.040   0.217  O2    LSE  13  
LSE  C7   C7    C   0  1  N  N  S  45.454   3.680  161.523  -0.265  -0.671  -0.274  C7    LSE  14  
LSE  C11  C11   C   0  1  N  N  N  46.870   3.944  160.952  -0.175  -2.032   0.419  C11   LSE  15  
LSE  SE6  SE6   SE  0  0  N  N  N  48.022   2.319  161.138  -1.723  -3.124  -0.081  SE6   LSE  16  
LSE  C12  C12   C   0  1  N  N  N  47.794   1.103  159.518  -1.360  -4.769   0.922  C12   LSE  17  
LSE  C6   C6    C   0  1  N  N  S  44.447   4.904  161.225   1.003   0.136   0.016  C6    LSE  18  
LSE  O1   O1    O   0  1  N  N  N  44.323   5.061  159.860   2.137  -0.545  -0.525  O1    LSE  19  
LSE  C5   C5    C   0  1  N  N  S  44.955   6.159  159.267   3.349  -0.321   0.197  C5    LSE  20  
LSE  O    O     O   0  1  N  N  N  44.270   7.283  159.749   3.717   1.057   0.096  O     LSE  21  
LSE  C4   C4    C   0  1  N  N  R  44.743   6.108  157.728   4.464  -1.189  -0.393  C4    LSE  22  
LSE  O7   O7    O   0  1  N  N  N  45.497   4.991  157.255   4.124  -2.569  -0.242  O7    LSE  23  
LSE  C3   C3    C   0  1  N  N  S  45.265   7.363  157.084   5.773  -0.899   0.347  C3    LSE  24  
LSE  O8   O8    O   0  1  N  N  N  44.885   7.371  155.733   6.834  -1.651  -0.245  O8    LSE  25  
LSE  C2   C2    C   0  1  N  N  R  44.639   8.558  157.755   6.085   0.597   0.242  C2    LSE  26  
LSE  O9   O9    O   0  1  N  N  N  43.195   8.644  157.478   6.286   0.948  -1.128  O9    LSE  27  
LSE  C1   C1    C   0  1  N  N  R  44.856   8.476  159.257   4.908   1.397   0.808  C1    LSE  28  
LSE  C    C     C   0  1  N  N  N  44.152   9.630  159.991   5.186   2.893   0.651  C     LSE  29  
LSE  O10  O10   O   0  1  N  N  N  44.446   9.575  161.329   4.144   3.640   1.283  O10   LSE  30  
LSE  H1   H1    H   0  1  N  N  N  42.165   3.470  164.768  -1.331   3.958  -0.468  H1    LSE  31  
LSE  H2   H2    H   0  1  N  N  N  43.589   5.073  163.882  -0.289   2.361   0.974  H2    LSE  32  
LSE  H3   H3    H   0  1  N  N  N  42.739   3.634  161.318   0.807   1.409  -1.713  H3    LSE  33  
LSE  H4   H4    H   0  1  N  N  N  41.346   5.358  162.050   2.010   3.197  -0.679  H4    LSE  34  
LSE  H5   H5    H   0  1  N  N  N  44.001   2.150  163.037  -1.714   1.200  -1.464  H5    LSE  35  
LSE  H6   H6    H   0  1  N  N  N  44.424   0.784  164.742  -4.110   1.197  -1.237  H6    LSE  36  
LSE  H7   H7    H   0  1  N  N  N  46.070   1.373  164.325  -3.932   0.224   0.242  H7    LSE  37  
LSE  H8   H8    H   0  1  N  N  N  46.496   1.950  166.587  -5.037   2.015   1.553  H8    LSE  38  
LSE  H9   H9    H   0  1  N  N  N  44.805   1.556  167.048  -5.215   2.989   0.073  H9    LSE  39  
LSE  H10  H10   H   0  1  N  N  N  45.711  -0.363  169.132  -6.532  -0.620   1.829  H10   LSE  40  
LSE  H11  H11   H   0  1  N  N  N  46.810  -1.728  168.735  -7.585  -1.188   0.511  H11   LSE  41  
LSE  H12  H12   H   0  1  N  N  N  47.439  -0.046  168.759  -5.817  -1.186   0.301  H12   LSE  42  
LSE  H13  H13   H   0  1  N  N  N  43.950  -1.395  167.123  -8.236   2.984   0.433  H13   LSE  43  
LSE  H14  H14   H   0  1  N  N  N  44.485  -1.623  165.423  -9.110   1.442   0.594  H14   LSE  44  
LSE  H15  H15   H   0  1  N  N  N  45.138  -2.681  166.720  -8.058   2.011   1.912  H15   LSE  45  
LSE  H16  H16   H   0  1  N  N  N  47.848  -2.042  165.848  -6.120   0.477  -2.229  H16   LSE  46  
LSE  H17  H17   H   0  1  N  N  N  47.234  -0.930  164.577  -7.888   0.475  -2.018  H17   LSE  47  
LSE  H18  H18   H   0  1  N  N  N  48.419  -0.340  165.792  -7.013   2.017  -2.180  H18   LSE  48  
LSE  H19  H19   H   0  1  N  N  N  45.041   2.769  161.066  -0.364  -0.817  -1.350  H19   LSE  49  
LSE  H20  H20   H   0  1  N  N  N  47.331   4.778  161.501   0.741  -2.537   0.111  H20   LSE  50  
LSE  H21  H21   H   0  1  N  N  N  46.787   4.208  159.887  -0.164  -1.889   1.500  H21   LSE  51  
LSE  H22  H22   H   0  1  N  N  N  48.432   0.214  159.633  -0.409  -5.189   0.599  H22   LSE  52  
LSE  H23  H23   H   0  1  N  N  N  46.742   0.791  159.439  -1.314  -4.542   1.987  H23   LSE  53  
LSE  H24  H24   H   0  1  N  N  N  48.084   1.647  158.607  -2.158  -5.489   0.739  H24   LSE  54  
LSE  H25  H25   H   0  1  N  N  N  44.841   5.810  161.709   1.125   0.248   1.094  H25   LSE  55  
LSE  H26  H26   H   0  1  N  N  N  46.030   6.196  159.497   3.202  -0.581   1.245  H26   LSE  56  
LSE  H27  H27   H   0  1  N  N  N  43.672   5.987  157.509   4.584  -0.958  -1.451  H27   LSE  57  
LSE  H28  H28   H   0  1  N  N  N  45.172   4.195  157.659   3.302  -2.822  -0.682  H28   LSE  58  
LSE  H29  H29   H   0  1  N  N  N  46.359   7.408  157.191   5.668  -1.177   1.396  H29   LSE  59  
LSE  H30  H30   H   0  1  N  N  N  45.210   8.161  155.317   6.699  -2.608  -0.220  H30   LSE  60  
LSE  H31  H31   H   0  1  N  N  N  45.131   9.468  157.381   6.986   0.822   0.813  H31   LSE  61  
LSE  H32  H32   H   0  1  N  N  N  42.833   9.406  157.915   7.014   0.475  -1.553  H32   LSE  62  
LSE  H33  H33   H   0  1  N  N  N  45.933   8.508  159.477   4.781   1.159   1.864  H33   LSE  63  
LSE  H34  H34   H   0  1  N  N  N  44.498  10.590  159.580   6.141   3.136   1.118  H34   LSE  64  
LSE  H35  H35   H   0  1  N  N  N  43.064   9.542  159.852   5.224   3.147  -0.408  H35   LSE  65  
LSE  H36  H36   H   0  1  N  N  N  44.010  10.289  161.779   4.255   4.598   1.223  H36   LSE  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LSE  O8   C3   SING  N  N   1  
LSE  C3   C4   SING  N  N   2  
LSE  C3   C2   SING  N  N   3  
LSE  O7   C4   SING  N  N   4  
LSE  O9   C2   SING  N  N   5  
LSE  C4   C5   SING  N  N   6  
LSE  C2   C1   SING  N  N   7  
LSE  C1   O    SING  N  N   8  
LSE  C1   C    SING  N  N   9  
LSE  C5   O    SING  N  N  10  
LSE  C5   O1   SING  N  N  11  
LSE  C12  SE6  SING  N  N  12  
LSE  O1   C6   SING  N  N  13  
LSE  C    O10  SING  N  N  14  
LSE  C11  SE6  SING  N  N  15  
LSE  C11  C7   SING  N  N  16  
LSE  C6   C7   SING  N  N  17  
LSE  C6   C10  SING  N  N  18  
LSE  C7   O2   SING  N  N  19  
LSE  O3   C10  SING  N  N  20  
LSE  C10  C9   SING  N  N  21  
LSE  O2   C8   SING  N  N  22  
LSE  C9   C8   SING  N  N  23  
LSE  C9   O4   SING  N  N  24  
LSE  C8   O5   SING  N  N  25  
LSE  O5   C13  SING  N  N  26  
LSE  C13  C14  SING  N  N  27  
LSE  C16  SI   SING  N  N  28  
LSE  C14  SI   SING  N  N  29  
LSE  C17  SI   SING  N  N  30  
LSE  SI   C18  SING  N  N  31  
LSE  O4   H1   SING  N  N  32  
LSE  C9   H2   SING  N  N  33  
LSE  C10  H3   SING  N  N  34  
LSE  O3   H4   SING  N  N  35  
LSE  C8   H5   SING  N  N  36  
LSE  C13  H6   SING  N  N  37  
LSE  C13  H7   SING  N  N  38  
LSE  C14  H8   SING  N  N  39  
LSE  C14  H9   SING  N  N  40  
LSE  C18  H10  SING  N  N  41  
LSE  C18  H11  SING  N  N  42  
LSE  C18  H12  SING  N  N  43  
LSE  C17  H13  SING  N  N  44  
LSE  C17  H14  SING  N  N  45  
LSE  C17  H15  SING  N  N  46  
LSE  C16  H16  SING  N  N  47  
LSE  C16  H17  SING  N  N  48  
LSE  C16  H18  SING  N  N  49  
LSE  C7   H19  SING  N  N  50  
LSE  C11  H20  SING  N  N  51  
LSE  C11  H21  SING  N  N  52  
LSE  C12  H22  SING  N  N  53  
LSE  C12  H23  SING  N  N  54  
LSE  C12  H24  SING  N  N  55  
LSE  C6   H25  SING  N  N  56  
LSE  C5   H26  SING  N  N  57  
LSE  C4   H27  SING  N  N  58  
LSE  O7   H28  SING  N  N  59  
LSE  C3   H29  SING  N  N  60  
LSE  O8   H30  SING  N  N  61  
LSE  C2   H31  SING  N  N  62  
LSE  O9   H32  SING  N  N  63  
LSE  C1   H33  SING  N  N  64  
LSE  C    H34  SING  N  N  65  
LSE  C    H35  SING  N  N  66  
LSE  O10  H36  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LSE  SMILES            ACDLabs               12.01  "O(C1C(OC(OCC[Si](C)(C)C)C(O)C1O)C[Se]C)C2OC(C(O)C(O)C2O)CO"  
LSE  InChI             InChI                 1.03   "InChI=1S/C18H36O10SeSi/c1-29-8-10-16(28-18-14(23)12(21)11(20)9(7-19)26-18)13(22)15(24)17(27-10)25-5-6-30(2,3)4/h9-24H,5-8H2,1-4H3/t9-,10-,11+,12+,13-,14-,15-,16-,17-,18+/m1/s1"  
LSE  InChIKey          InChI                 1.03   DAHDBHYUNUXOAL-MUKCROHVSA-N  
LSE  SMILES_CANONICAL  CACTVS                3.385  "C[Se]C[C@H]1O[C@@H](OCC[Si](C)(C)C)[C@H](O)[C@@H](O)[C@@H]1O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O"  
LSE  SMILES            CACTVS                3.385  "C[Se]C[CH]1O[CH](OCC[Si](C)(C)C)[CH](O)[CH](O)[CH]1O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O"  
LSE  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C[Si](C)(C)CCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)C[Se]C)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O"  
LSE  SMILES            "OpenEye OEToolkits"  1.7.6  "C[Si](C)(C)CCOC1C(C(C(C(O1)C[Se]C)OC2C(C(C(C(O2)CO)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LSE  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-(trimethylsilyl)ethyl 4-O-beta-D-galactopyranosyl-6-Se-methyl-6-seleno-beta-D-glucopyranoside"  
LSE  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-[(2S,3S,4R,5R,6R)-2-(methylselanylmethyl)-4,5-bis(oxidanyl)-6-(2-trimethylsilylethoxy)oxan-3-yl]oxy-oxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LSE  "Create component"    2013-12-03  PDBJ  
LSE  "Initial release"     2014-11-05  RCSB  
LSE  "Other modification"  2020-02-14  RCSB  
##
