data_LPE
#

_chem_comp.id                                   LPE
_chem_comp.name                                 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H57 N O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        LPC-ETHER
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2002-03-29
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       510.708
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LPE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LPE  C1    C1    C  0  1  N  N  N  53.174  22.947  -11.809  -13.660    1.938   7.981  C1    LPE   1  
LPE  O1    O1    O  0  1  N  N  N  52.028  23.760  -11.808  -13.855    0.698   7.313  O1    LPE   2  
LPE  C2    C2    C  0  1  N  N  R  53.916  23.119  -13.108  -13.762    3.068   6.966  C2    LPE   3  
LPE  O2H   O2H   O  0  1  N  N  N  54.211  24.513  -13.270  -15.060    3.009   6.369  O2H   LPE   4  
LPE  C3    C3    C  0  1  N  N  N  55.192  22.339  -13.079  -13.591    4.430   7.629  C3    LPE   5  
LPE  C11   C11   C  0  1  N  N  N  50.918  23.096  -11.257  -13.750   -0.400   8.207  C11   LPE   6  
LPE  C12   C12   C  0  1  N  N  N  49.628  23.667  -11.808  -13.964   -1.708   7.455  C12   LPE   7  
LPE  O3    O3    O  0  1  N  N  N  55.724  22.137  -14.367  -13.688    5.460   6.651  O3    LPE   8  
LPE  P     P     P  0  1  N  N  R  57.314  21.900  -14.526  -13.534    6.994   7.137  P     LPE   9  
LPE  O31   O31   O  0  1  N  N  N  57.960  22.444  -13.260  -12.225    7.329   7.792  O31   LPE  10  
LPE  O32   O32   O  0  1  N  N  N  57.595  20.471  -14.919  -13.838    7.843   5.793  O32   LPE  11  
LPE  O33   O33   O  0  1  N  N  N  57.691  22.912  -15.709  -14.842    7.219   8.064  O33   LPE  12  
LPE  C31   C31   C  0  1  N  N  N  57.743  24.314  -15.415  -16.133    6.936   7.551  C31   LPE  13  
LPE  C32   C32   C  0  1  N  N  N  57.622  25.121  -16.711  -17.176    7.229   8.612  C32   LPE  14  
LPE  N     N     N  1  1  N  N  N  56.230  25.590  -16.872  -18.522    6.894   8.081  N     LPE  15  
LPE  C1N   C1N   C  0  1  N  N  N  56.139  27.065  -17.000  -18.849    7.748   6.849  C1N   LPE  16  
LPE  C2N   C2N   C  0  1  N  N  N  55.637  24.988  -18.093  -18.593    5.417   7.672  C2N   LPE  17  
LPE  C3N   C3N   C  0  1  N  N  N  55.429  25.151  -15.703  -19.603    7.150   9.140  C3N   LPE  18  
LPE  C13   C13   C  0  1  N  N  N  49.872  24.470  -13.070  -13.875   -2.927   8.379  C13   LPE  19  
LPE  C14   C14   C  0  1  N  N  N  49.926  25.964  -12.759  -14.110   -4.257   7.656  C14   LPE  20  
LPE  C15   C15   C  0  1  N  N  N  49.064  26.718  -13.798  -14.052   -5.473   8.583  C15   LPE  21  
LPE  C16   C16   C  0  1  N  N  N  49.982  27.600  -14.683  -14.220   -6.776   7.798  C16   LPE  22  
LPE  C17   C17   C  0  1  N  N  N       ?       ?        ?  -14.124   -7.994   8.718  C17   LPE  23  
LPE  C18   C18   C  0  1  N  N  N       ?       ?        ?  -14.265   -9.330   7.981  C18   LPE  24  
LPE  C19   C19   C  0  1  N  N  N       ?       ?        ?  -14.092  -10.587   8.839  C19   LPE  25  
LPE  C20   C20   C  0  1  N  N  N       ?       ?        ?  -14.299  -11.889   8.062  C20   LPE  26  
LPE  C21   C21   C  0  1  N  N  N       ?       ?        ?  -14.105  -13.110   8.965  C21   LPE  27  
LPE  C22   C22   C  0  1  N  N  N       ?       ?        ?  -14.348  -14.411   8.198  C22   LPE  28  
LPE  C23   C23   C  0  1  N  N  N       ?       ?        ?  -14.185  -15.667   9.059  C23   LPE  29  
LPE  C24   C24   C  0  1  N  N  N       ?       ?        ?  -14.500  -16.996   8.365  C24   LPE  30  
LPE  C25   C25   C  0  1  N  N  N       ?       ?        ?  -14.267  -18.217   9.258  C25   LPE  31  
LPE  C26   C26   C  0  1  N  N  N       ?       ?        ?  -14.589  -19.545   8.565  C26   LPE  32  
LPE  C27   C27   C  0  1  N  N  N       ?       ?        ?  -14.292  -20.806   9.380  C27   LPE  33  
LPE  C28   C28   C  0  1  N  N  N       ?       ?        ?  -14.676  -22.095   8.670  C28   LPE  34  
LPE  H11   1H1   H  0  1  N  N  N  53.828  23.236  -10.973  -14.430    2.027   8.754  H11   LPE  35  
LPE  H12   2H1   H  0  1  N  N  N  52.875  21.895  -11.696  -12.671    1.918   8.451  H12   LPE  36  
LPE  H21   1H2   H  0  1  N  N  N  53.301  22.754  -13.944  -13.036    2.928   6.157  H21   LPE  37  
LPE  HO21  1HO2  H  0  0  N  N  N  54.276  24.925  -12.416  -15.470    2.193   6.691  HO21  LPE  38  
LPE  H31   1H3   H  0  1  N  N  N  55.928  22.895  -12.480  -12.617    4.520   8.120  H31   LPE  39  
LPE  H32   2H3   H  0  1  N  N  N  54.975  21.352  -12.644  -14.377    4.610   8.369  H32   LPE  40  
LPE  H111  1H11  H  0  0  N  N  N  50.976  22.027  -11.511  -12.764   -0.377   8.681  H111  LPE  41  
LPE  H112  2H11  H  0  0  N  N  N  50.929  23.231  -10.165  -14.515   -0.285   8.982  H112  LPE  42  
LPE  H121  1H12  H  0  0  N  N  N  48.944  22.838  -12.042  -13.205   -1.802   6.669  H121  LPE  43  
LPE  H122  2H12  H  0  0  N  N  N  49.193  24.335  -11.050  -14.946   -1.673   6.971  H122  LPE  44  
LPE  HO31  1HO3  H  0  0  N  N  N  57.654  20.408  -15.865  -13.124    7.947   5.127  HO31  LPE  45  
LPE  H311  1H31  H  0  0  N  N  N  56.913  24.577  -14.743  -16.164    5.875   7.283  H311  LPE  46  
LPE  H312  2H31  H  0  0  N  N  N  58.702  24.548  -14.930  -16.296    7.532   6.648  H312  LPE  47  
LPE  H321  1H32  H  0  0  N  N  N  58.298  25.988  -16.668  -17.205    8.289   8.879  H321  LPE  48  
LPE  H322  2H32  H  0  0  N  N  N  57.895  24.485  -17.566  -17.029    6.616   9.504  H322  LPE  49  
LPE  H1N1  1H1N  H  0  0  N  N  N  56.116  27.520  -15.999  -19.896    7.575   6.591  H1N1  LPE  50  
LPE  H1N2  2H1N  H  0  0  N  N  N  57.013  27.439  -17.553  -18.677    8.794   7.111  H1N2  LPE  51  
LPE  H1N3  3H1N  H  0  0  N  N  N  55.220  27.330  -17.543  -18.188    7.433   6.039  H1N3  LPE  52  
LPE  H2N1  1H2N  H  0  0  N  N  N  55.490  25.769  -18.853  -19.327    4.927   8.315  H2N1  LPE  53  
LPE  H2N2  2H2N  H  0  0  N  N  N  56.314  24.216  -18.487  -18.899    5.375   6.625  H2N2  LPE  54  
LPE  H2N3  3H2N  H  0  0  N  N  N  54.667  24.533  -17.843  -17.600    4.984   7.809  H2N3  LPE  55  
LPE  H3N1  1H3N  H  0  0  N  N  N  56.086  25.042  -14.828  -19.351    6.561  10.024  H3N1  LPE  56  
LPE  H3N2  2H3N  H  0  0  N  N  N  54.653  25.901  -15.488  -19.604    8.218   9.366  H3N2  LPE  57  
LPE  H3N3  3H3N  H  0  0  N  N  N  54.954  24.184  -15.927  -20.561    6.837   8.720  H3N3  LPE  58  
LPE  H131  1H13  H  0  0  N  N  N  50.830  24.161  -13.513  -12.878   -2.964   8.837  H131  LPE  59  
LPE  H132  2H13  H  0  0  N  N  N  49.046  24.285  -13.772  -14.594   -2.822   9.200  H132  LPE  60  
LPE  H141  1H14  H  0  0  N  N  N  49.534  26.147  -11.748  -15.078   -4.229   7.141  H141  LPE  61  
LPE  H142  2H14  H  0  0  N  N  N  50.966  26.319  -12.807  -13.343   -4.363   6.880  H142  LPE  62  
LPE  H151  1H15  H  0  0  N  N  N  48.531  25.992  -14.430  -14.842   -5.408   9.340  H151  LPE  63  
LPE  H152  2H15  H  0  0  N  N  N  48.333  27.354  -13.278  -13.092   -5.485   9.114  H152  LPE  64  
LPE  H161  1H16  H  0  0  N  N  N  50.628  28.456  -14.928  -15.192   -6.764   7.291  H161  LPE  65  
LPE  H162  2H16  H  0  0  N  N  N  50.857  27.866  -15.295  -13.448   -6.841   7.021  H162  LPE  66  
LPE  H171  1H17  H  0  0  N  N  N       ?       ?        ?  -14.876   -7.922   9.512  H171  LPE  67  
LPE  H172  2H17  H  0  0  N  N  N       ?       ?        ?  -13.148   -7.987   9.221  H172  LPE  68  
LPE  H181  1H18  H  0  0  N  N  N       ?       ?        ?  -13.531   -9.354   7.166  H181  LPE  69  
LPE  H182  2H18  H  0  0  N  N  N       ?       ?        ?  -15.253   -9.369   7.507  H182  LPE  70  
LPE  H191  1H19  H  0  0  N  N  N       ?       ?        ?  -14.819  -10.541   9.659  H191  LPE  71  
LPE  H192  2H19  H  0  0  N  N  N       ?       ?        ?  -13.101  -10.588   9.309  H192  LPE  72  
LPE  H201  1H20  H  0  0  N  N  N       ?       ?        ?  -13.590  -11.947   7.229  H201  LPE  73  
LPE  H202  2H20  H  0  0  N  N  N       ?       ?        ?  -15.308  -11.904   7.633  H202  LPE  74  
LPE  H211  1H21  H  0  0  N  N  N       ?       ?        ?  -13.086  -13.094   9.368  H211  LPE  75  
LPE  H212  2H21  H  0  0  N  N  N       ?       ?        ?  -14.794  -13.052   9.817  H212  LPE  76  
LPE  H221  1H22  H  0  0  N  N  N       ?       ?        ?  -13.680  -14.462   7.330  H221  LPE  77  
LPE  H222  2H22  H  0  0  N  N  N       ?       ?        ?  -15.369  -14.404   7.797  H222  LPE  78  
LPE  H231  1H23  H  0  0  N  N  N       ?       ?        ?  -14.831  -15.567   9.941  H231  LPE  79  
LPE  H232  2H23  H  0  0  N  N  N       ?       ?        ?  -13.156  -15.708   9.436  H232  LPE  80  
LPE  H241  1H24  H  0  0  N  N  N       ?       ?        ?  -13.859  -17.074   7.477  H241  LPE  81  
LPE  H242  2H24  H  0  0  N  N  N       ?       ?        ?  -15.532  -16.983   7.999  H242  LPE  82  
LPE  H251  1H25  H  0  0  N  N  N       ?       ?        ?  -14.855  -18.133  10.178  H251  LPE  83  
LPE  H252  2H25  H  0  0  N  N  N       ?       ?        ?  -13.213  -18.240   9.564  H252  LPE  84  
LPE  H261  1H26  H  0  0  N  N  N       ?       ?        ?  -14.024  -19.590   7.626  H261  LPE  85  
LPE  H262  2H26  H  0  0  N  N  N       ?       ?        ?  -15.650  -19.553   8.286  H262  LPE  86  
LPE  H271  1H27  H  0  0  N  N  N       ?       ?        ?  -14.854  -20.747  10.321  H271  LPE  87  
LPE  H272  2H27  H  0  0  N  N  N       ?       ?        ?  -13.233  -20.842   9.656  H272  LPE  88  
LPE  H281  1H28  H  0  0  N  N  N       ?       ?        ?  -14.541  -22.948   9.341  H281  LPE  89  
LPE  H282  2H28  H  0  0  N  N  N       ?       ?        ?  -14.054  -22.267   7.787  H282  LPE  90  
LPE  H283  3H28  H  0  0  N  N  N       ?       ?        ?  -15.725  -22.073   8.356  H283  LPE  91  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LPE  C1   O1    SING  N  N   1  
LPE  C1   C2    SING  N  N   2  
LPE  C1   H11   SING  N  N   3  
LPE  C1   H12   SING  N  N   4  
LPE  O1   C11   SING  N  N   5  
LPE  C2   O2H   SING  N  N   6  
LPE  C2   C3    SING  N  N   7  
LPE  C2   H21   SING  N  N   8  
LPE  O2H  HO21  SING  N  N   9  
LPE  C3   O3    SING  N  N  10  
LPE  C3   H31   SING  N  N  11  
LPE  C3   H32   SING  N  N  12  
LPE  C11  C12   SING  N  N  13  
LPE  C11  H111  SING  N  N  14  
LPE  C11  H112  SING  N  N  15  
LPE  C12  C13   SING  N  N  16  
LPE  C12  H121  SING  N  N  17  
LPE  C12  H122  SING  N  N  18  
LPE  O3   P     SING  N  N  19  
LPE  P    O31   DOUB  N  N  20  
LPE  P    O32   SING  N  N  21  
LPE  P    O33   SING  N  N  22  
LPE  O32  HO31  SING  N  N  23  
LPE  O33  C31   SING  N  N  24  
LPE  C31  C32   SING  N  N  25  
LPE  C31  H311  SING  N  N  26  
LPE  C31  H312  SING  N  N  27  
LPE  C32  N     SING  N  N  28  
LPE  C32  H321  SING  N  N  29  
LPE  C32  H322  SING  N  N  30  
LPE  N    C1N   SING  N  N  31  
LPE  N    C2N   SING  N  N  32  
LPE  N    C3N   SING  N  N  33  
LPE  C1N  H1N1  SING  N  N  34  
LPE  C1N  H1N2  SING  N  N  35  
LPE  C1N  H1N3  SING  N  N  36  
LPE  C2N  H2N1  SING  N  N  37  
LPE  C2N  H2N2  SING  N  N  38  
LPE  C2N  H2N3  SING  N  N  39  
LPE  C3N  H3N1  SING  N  N  40  
LPE  C3N  H3N2  SING  N  N  41  
LPE  C3N  H3N3  SING  N  N  42  
LPE  C13  C14   SING  N  N  43  
LPE  C13  H131  SING  N  N  44  
LPE  C13  H132  SING  N  N  45  
LPE  C14  C15   SING  N  N  46  
LPE  C14  H141  SING  N  N  47  
LPE  C14  H142  SING  N  N  48  
LPE  C15  C16   SING  N  N  49  
LPE  C15  H151  SING  N  N  50  
LPE  C15  H152  SING  N  N  51  
LPE  C16  C17   SING  N  N  52  
LPE  C16  H161  SING  N  N  53  
LPE  C16  H162  SING  N  N  54  
LPE  C17  C18   SING  N  N  55  
LPE  C17  H171  SING  N  N  56  
LPE  C17  H172  SING  N  N  57  
LPE  C18  C19   SING  N  N  58  
LPE  C18  H181  SING  N  N  59  
LPE  C18  H182  SING  N  N  60  
LPE  C19  C20   SING  N  N  61  
LPE  C19  H191  SING  N  N  62  
LPE  C19  H192  SING  N  N  63  
LPE  C20  C21   SING  N  N  64  
LPE  C20  H201  SING  N  N  65  
LPE  C20  H202  SING  N  N  66  
LPE  C21  C22   SING  N  N  67  
LPE  C21  H211  SING  N  N  68  
LPE  C21  H212  SING  N  N  69  
LPE  C22  C23   SING  N  N  70  
LPE  C22  H221  SING  N  N  71  
LPE  C22  H222  SING  N  N  72  
LPE  C23  C24   SING  N  N  73  
LPE  C23  H231  SING  N  N  74  
LPE  C23  H232  SING  N  N  75  
LPE  C24  C25   SING  N  N  76  
LPE  C24  H241  SING  N  N  77  
LPE  C24  H242  SING  N  N  78  
LPE  C25  C26   SING  N  N  79  
LPE  C25  H251  SING  N  N  80  
LPE  C25  H252  SING  N  N  81  
LPE  C26  C27   SING  N  N  82  
LPE  C26  H261  SING  N  N  83  
LPE  C26  H262  SING  N  N  84  
LPE  C27  C28   SING  N  N  85  
LPE  C27  H271  SING  N  N  86  
LPE  C27  H272  SING  N  N  87  
LPE  C28  H281  SING  N  N  88  
LPE  C28  H282  SING  N  N  89  
LPE  C28  H283  SING  N  N  90  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LPE  SMILES            ACDLabs               10.04  "O=P(OCC(O)COCCCCCCCCCCCCCCCCCC)(OCC[N+](C)(C)C)O"  
LPE  SMILES_CANONICAL  CACTVS                3.341  "CCCCCCCCCCCCCCCCCCOC[C@@H](O)CO[P@](O)(=O)OCC[N+](C)(C)C"  
LPE  SMILES            CACTVS                3.341  "CCCCCCCCCCCCCCCCCCOC[CH](O)CO[P](O)(=O)OCC[N+](C)(C)C"  
LPE  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CCCCCCCCCCCCCCCCCCOC[C@H](CO[P@@](=O)(O)OCC[N+](C)(C)C)O"  
LPE  SMILES            "OpenEye OEToolkits"  1.5.0  "CCCCCCCCCCCCCCCCCCOCC(COP(=O)(O)OCC[N+](C)(C)C)O"  
LPE  InChI             InChI                 1.03   "InChI=1S/C26H56NO6P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-22-31-24-26(28)25-33-34(29,30)32-23-21-27(2,3)4/h26,28H,5-25H2,1-4H3/p+1/t26-/m1/s1"  
LPE  InChIKey          InChI                 1.03   XKBJVQHMEXMFDZ-AREMUKBSSA-O  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LPE  "SYSTEMATIC NAME"  ACDLabs               10.04  "(4S,7R)-4,7-dihydroxy-N,N,N-trimethyl-3,5,9-trioxa-4-phosphaheptacosan-1-aminium 4-oxide"  
LPE  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[hydroxy-[(2R)-2-hydroxy-3-octadecoxy-propoxy]phosphoryl]oxyethyl-trimethyl-azanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LPE  "Create component"   2002-03-29  RCSB  
LPE  "Modify descriptor"  2011-06-04  RCSB  
LPE  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LPE
_pdbx_chem_comp_synonyms.name        LPC-ETHER
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
