data_LME
# 
_chem_comp.id                                    LME 
_chem_comp.name                                  "(2S,3R)-2-azanyl-3-methyl-pentanedioic acid" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H11 N O4" 
_chem_comp.mon_nstd_parent_comp_id               GLU 
_chem_comp.pdbx_synonyms                         "(3R)-3-methyl-L-glutamic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2004-11-05 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        161.156 
_chem_comp.one_letter_code                       E 
_chem_comp.three_letter_code                     LME 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1XT7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LME N   N   N 0 1 N N N Y Y N -7.673  -17.247 -4.828 1.200  1.888  -0.104 N   LME 1  
LME CA  CA  C 0 1 N N S Y N N -7.596  -17.916 -3.525 1.143  0.579  0.560  CA  LME 2  
LME CB  CB  C 0 1 N N R N N N -7.247  -19.438 -3.656 -0.108 -0.172 0.099  CB  LME 3  
LME C1  C1  C 0 1 N N N N N N -5.791  -19.677 -4.123 -0.054 -0.370 -1.417 C1  LME 4  
LME CG  CG  C 0 1 N N N N N N -8.243  -20.189 -4.593 -1.353 0.640  0.463  CG  LME 5  
LME CD  CD  C 0 1 N N N N N N -9.677  -20.046 -4.143 -2.588 -0.154 0.120  CD  LME 6  
LME OE1 OE1 O 0 1 N N N N N N -10.064 -20.543 -2.936 -2.483 -1.255 -0.365 OE1 LME 7  
LME OE2 OE2 O 0 1 N N N N N N -10.510 -19.449 -4.880 -3.804 0.363  0.354  OE2 LME 8  
LME C   C   C 0 1 N N N Y N Y -6.794  -17.195 -2.449 2.369  -0.220 0.202  C   LME 9  
LME O   O   O 0 1 N N N Y N Y -6.528  -17.838 -1.395 3.013  0.069  -0.779 O   LME 10 
LME H2  H2  H 0 1 N Y N Y Y N -7.897  -16.282 -4.695 1.237  1.784  -1.107 H2  LME 11 
LME H   H   H 0 1 N N N Y Y N -6.792  -17.323 -5.294 0.421  2.468  0.171  H   LME 12 
LME HA  HA  H 0 1 N N N Y N N -8.622  -17.854 -3.134 1.104  0.721  1.640  HA  LME 13 
LME HB  HB  H 0 1 N N N N N N -7.346  -19.853 -2.642 -0.151 -1.143 0.592  HB  LME 14 
LME H11 H11 H 0 1 N N N N N N -5.602  -20.758 -4.197 -0.011 0.601  -1.910 H11 LME 15 
LME H12 H12 H 0 1 N N N N N N -5.641  -19.210 -5.108 0.833  -0.949 -1.676 H12 LME 16 
LME H13 H13 H 0 1 N N N N N N -5.095  -19.232 -3.396 -0.945 -0.905 -1.745 H13 LME 17 
LME HG2 HG2 H 0 1 N N N N N N -8.152  -19.770 -5.606 -1.346 0.858  1.531  HG2 LME 18 
LME HG3 HG3 H 0 1 N N N N N N -7.983  -21.258 -4.594 -1.355 1.574  -0.098 HG3 LME 19 
LME HE2 HE2 H 0 1 N N N N N N -11.357 -19.431 -4.451 -4.566 -0.183 0.118  HE2 LME 20 
LME OXT OXT O 0 1 N Y N Y N Y -6.271  -15.864 -2.428 2.746  -1.252 0.972  OXT LME 21 
LME HXT HXT H 0 1 N Y N Y N Y -5.814  -15.716 -1.608 3.539  -1.735 0.702  HXT LME 22 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LME N   CA  SING N N 1  
LME N   H2  SING N N 2  
LME N   H   SING N N 3  
LME CA  CB  SING N N 4  
LME CA  C   SING N N 5  
LME CA  HA  SING N N 6  
LME CB  C1  SING N N 7  
LME CB  CG  SING N N 8  
LME CB  HB  SING N N 9  
LME C1  H11 SING N N 10 
LME C1  H12 SING N N 11 
LME C1  H13 SING N N 12 
LME CG  CD  SING N N 13 
LME CG  HG2 SING N N 14 
LME CG  HG3 SING N N 15 
LME CD  OE1 DOUB N N 16 
LME CD  OE2 SING N N 17 
LME OE2 HE2 SING N N 18 
LME C   O   DOUB N N 19 
LME C   OXT SING N N 20 
LME OXT HXT SING N N 21 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LME SMILES           ACDLabs              12.01 "O=C(O)C(N)C(CC(=O)O)C"                                                                    
LME SMILES_CANONICAL CACTVS               3.370 "C[C@H](CC(O)=O)[C@H](N)C(O)=O"                                                            
LME SMILES           CACTVS               3.370 "C[CH](CC(O)=O)[CH](N)C(O)=O"                                                              
LME SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@H](CC(=O)O)[C@@H](C(=O)O)N"                                                           
LME SMILES           "OpenEye OEToolkits" 1.7.0 "CC(CC(=O)O)C(C(=O)O)N"                                                                    
LME InChI            InChI                1.03  "InChI=1S/C6H11NO4/c1-3(2-4(8)9)5(7)6(10)11/h3,5H,2,7H2,1H3,(H,8,9)(H,10,11)/t3-,5+/m1/s1" 
LME InChIKey         InChI                1.03  FHJNAFIJPFGZRI-WUJLRWPWSA-N                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LME "SYSTEMATIC NAME" ACDLabs              12.01 "(3R)-3-methyl-L-glutamic acid"               
LME "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S,3R)-2-azanyl-3-methyl-pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LME "Create component"   2004-11-05 RCSB 
LME "Other modification" 2010-10-26 RCSB 
LME "Modify descriptor"  2011-06-04 RCSB 
LME "Modify synonyms"    2021-03-01 PDBE 
LME "Modify backbone"    2023-11-03 PDBE 
LME "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      LME 
_pdbx_chem_comp_synonyms.name         "(3R)-3-methyl-L-glutamic acid" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LME 
_pdbx_chem_comp_pcm.modified_residue_id                GLU 
_pdbx_chem_comp_pcm.type                               Methylation 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
