data_5AE
#

_chem_comp.id                                   5AE
_chem_comp.name                                 "4-amino-1-(beta-D-ribofuranosyl)-1,3,5-triazin-2(1H)-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H12 N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        5-azacytidine
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-05-19
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       244.205
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5AE
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4QD3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5AE  O2     O2     O  0  1  N  N  N   -5.831  15.810   5.854  -1.691  -1.515   1.670  O2     5AE   1  
5AE  C2     C2     C  0  1  N  N  N   -7.019  15.549   6.110  -1.961  -0.660   0.844  C2     5AE   2  
5AE  N3     N3     N  0  1  N  N  N   -7.969  16.401   5.663  -3.234  -0.326   0.613  N3     5AE   3  
5AE  C4     C4     C  0  1  N  N  N   -9.264  16.163   5.934  -3.522   0.604  -0.286  C4     5AE   4  
5AE  N4     N4     N  0  1  N  N  N  -10.195  17.025   5.476  -4.832   0.944  -0.520  N4     5AE   5  
5AE  N5     N5     N  0  1  N  N  N   -9.616  15.060   6.655  -2.544   1.214  -0.970  N5     5AE   6  
5AE  N1     N1     N  0  1  N  N  N   -7.365  14.452   6.826  -0.976  -0.042   0.159  N1     5AE   7  
5AE  C6     C6     C  0  1  N  N  N   -8.664  14.220   7.092  -1.290   0.899  -0.757  C6     5AE   8  
5AE  "C1'"  "C1'"  C  0  1  N  N  R   -6.325  13.532   7.319   0.425  -0.393   0.405  "C1'"  5AE   9  
5AE  "O4'"  "O4'"  O  0  1  N  N  N   -6.646  12.158   7.065   1.219   0.796   0.608  "O4'"  5AE  10  
5AE  "C4'"  "C4'"  C  0  1  N  N  R   -5.858  11.393   7.975   2.584   0.440   0.336  "C4'"  5AE  11  
5AE  "C5'"  "C5'"  C  0  1  N  N  N   -6.382   9.964   8.086   3.316   1.628  -0.292  "C5'"  5AE  12  
5AE  "O5'"  "O5'"  O  0  1  N  N  N   -7.738   9.954   8.554   3.420   2.684   0.665  "O5'"  5AE  13  
5AE  "C3'"  "C3'"  C  0  1  N  N  S   -5.894  12.191   9.275   2.561  -0.742  -0.652  "C3'"  5AE  14  
5AE  "O3'"  "O3'"  O  0  1  N  N  N   -4.689  12.037  10.026   3.222  -1.878  -0.088  "O3'"  5AE  15  
5AE  "C2'"  "C2'"  C  0  1  N  N  R   -6.114  13.633   8.831   1.055  -1.038  -0.855  "C2'"  5AE  16  
5AE  "O2'"  "O2'"  O  0  1  N  N  N   -4.989  14.473   9.163   0.811  -2.445  -0.885  "O2'"  5AE  17  
5AE  H1     H1     H  0  1  N  N  N   -9.917  17.825   4.944  -5.542   0.505  -0.026  H1     5AE  18  
5AE  H2     H2     H  0  1  N  N  N  -11.163  16.864   5.668  -5.046   1.624  -1.177  H2     5AE  19  
5AE  H3     H3     H  0  1  N  N  N   -8.944  13.348   7.664  -0.508   1.395  -1.312  H3     5AE  20  
5AE  H4     H4     H  0  1  N  N  N   -5.373  13.779   6.826   0.507  -1.063   1.261  H4     5AE  21  
5AE  H5     H5     H  0  1  N  N  N   -4.817  11.354   7.621   3.082   0.145   1.260  H5     5AE  22  
5AE  H6     H6     H  0  1  N  N  N   -6.338   9.486   7.096   4.314   1.318  -0.601  H6     5AE  23  
5AE  H7     H7     H  0  1  N  N  N   -5.753   9.403   8.792   2.759   1.979  -1.161  H7     5AE  24  
5AE  H8     H8     H  0  1  N  N  N   -8.045   9.057   8.616   3.873   3.471   0.335  H8     5AE  25  
5AE  H9     H9     H  0  1  N  N  N   -6.759  11.864   9.871   3.028  -0.460  -1.596  H9     5AE  26  
5AE  H10    H10    H  0  1  N  N  N   -4.747  12.546  10.826   4.155  -1.729   0.114  H10    5AE  27  
5AE  H11    H11    H  0  1  N  N  N   -7.032  14.020   9.298   0.684  -0.561  -1.763  H11    5AE  28  
5AE  H12    H12    H  0  1  N  N  N   -4.890  14.511  10.107   1.186  -2.893  -1.655  H12    5AE  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5AE  N4     C4     SING  N  N   1  
5AE  N3     C4     DOUB  N  N   2  
5AE  N3     C2     SING  N  N   3  
5AE  O2     C2     DOUB  N  N   4  
5AE  C4     N5     SING  N  N   5  
5AE  C2     N1     SING  N  N   6  
5AE  N5     C6     DOUB  N  N   7  
5AE  N1     C6     SING  N  N   8  
5AE  N1     "C1'"  SING  N  N   9  
5AE  "O4'"  "C1'"  SING  N  N  10  
5AE  "O4'"  "C4'"  SING  N  N  11  
5AE  "C1'"  "C2'"  SING  N  N  12  
5AE  "C4'"  "C5'"  SING  N  N  13  
5AE  "C4'"  "C3'"  SING  N  N  14  
5AE  "C5'"  "O5'"  SING  N  N  15  
5AE  "C2'"  "O2'"  SING  N  N  16  
5AE  "C2'"  "C3'"  SING  N  N  17  
5AE  "C3'"  "O3'"  SING  N  N  18  
5AE  N4     H1     SING  N  N  19  
5AE  N4     H2     SING  N  N  20  
5AE  C6     H3     SING  N  N  21  
5AE  "C1'"  H4     SING  N  N  22  
5AE  "C4'"  H5     SING  N  N  23  
5AE  "C5'"  H6     SING  N  N  24  
5AE  "C5'"  H7     SING  N  N  25  
5AE  "O5'"  H8     SING  N  N  26  
5AE  "C3'"  H9     SING  N  N  27  
5AE  "O3'"  H10    SING  N  N  28  
5AE  "C2'"  H11    SING  N  N  29  
5AE  "O2'"  H12    SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5AE  SMILES            ACDLabs               12.01  "O=C1N=C(N=CN1C2OC(C(O)C2O)CO)N"  
5AE  InChI             InChI                 1.03   "InChI=1S/C8H12N4O5/c9-7-10-2-12(8(16)11-7)6-5(15)4(14)3(1-13)17-6/h2-6,13-15H,1H2,(H2,9,11,16)/t3-,4-,5-,6-/m1/s1"  
5AE  InChIKey          InChI                 1.03   NMUSYJAQQFHJEW-KVTDHHQDSA-N  
5AE  SMILES_CANONICAL  CACTVS                3.385  "NC1=NC(=O)N(C=N1)[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O"  
5AE  SMILES            CACTVS                3.385  "NC1=NC(=O)N(C=N1)[CH]2O[CH](CO)[CH](O)[CH]2O"  
5AE  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1=NC(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O)N"  
5AE  SMILES            "OpenEye OEToolkits"  1.7.6  "C1=NC(=NC(=O)N1C2C(C(C(O2)CO)O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
5AE  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-amino-1-(beta-D-ribofuranosyl)-1,3,5-triazin-2(1H)-one"  
5AE  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "4-azanyl-1-[(2R,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-1,3,5-triazin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5AE  "Create component"  2014-05-19  PDBJ  
5AE  "Initial release"   2014-06-25  RCSB  
5AE  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     5AE
_pdbx_chem_comp_synonyms.name        5-azacytidine
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
