data_2NE
# 
_chem_comp.id                                    2NE 
_chem_comp.name                                  "Salicylyl CoA" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H40 N7 O18 P3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-12-20 
_chem_comp.pdbx_modified_date                    2013-05-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        887.640 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     2NE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4I4Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
2NE C01 C01 C 0 1 N N N 45.268 -48.145 15.587 1.340   4.510  -2.355 C01 2NE 1  
2NE C02 C02 C 0 1 N N N 43.882 -48.050 14.934 0.916   5.769  -1.595 C02 2NE 2  
2NE C03 C03 C 0 1 N N N 43.903 -46.992 13.845 -0.226  6.457  -2.346 C03 2NE 3  
2NE C04 C04 C 0 1 N N N 42.890 -47.636 16.012 0.444   5.383  -0.192 C04 2NE 4  
2NE O05 O05 O 0 1 N N N 42.754 -48.655 16.957 -0.667  4.490  -0.292 O05 2NE 5  
2NE P06 P06 P 0 1 N N N 41.385 -48.733 17.772 -1.419  3.878  0.994  P06 2NE 6  
2NE O07 O07 O 0 1 N N N 41.475 -49.892 18.766 -0.407  2.923  1.804  O07 2NE 7  
2NE O08 O08 O 0 1 N N N 41.097 -47.435 18.444 -1.867  4.981  1.874  O08 2NE 8  
2NE O09 O09 O 0 1 N N N 40.181 -48.920 16.740 -2.695  3.023  0.513  O09 2NE 9  
2NE P10 P10 P 0 1 N N N 39.693 -50.306 16.147 -4.042  2.520  1.237  P10 2NE 10 
2NE O11 O11 O 0 1 N N N 38.745 -50.963 17.096 -5.104  3.729  1.295  O11 2NE 11 
2NE O12 O12 O 0 1 N N N 40.865 -51.221 15.883 -3.726  2.076  2.613  O12 2NE 12 
2NE O13 O13 O 0 1 N N N 38.964 -49.971 14.788 -4.671  1.292  0.408  O13 2NE 13 
2NE C14 C14 C 0 1 N N N 37.717 -49.370 14.780 -5.814  0.557  0.852  C14 2NE 14 
2NE C15 C15 C 0 1 N N R 36.998 -49.761 13.565 -6.144  -0.535 -0.167 C15 2NE 15 
2NE O16 O16 O 0 1 N N N 37.521 -49.030 12.364 -5.095  -1.517 -0.188 O16 2NE 16 
2NE C17 C17 C 0 1 N N R 38.145 -50.147 11.555 -5.717  -2.794 -0.448 C17 2NE 17 
2NE C18 C18 C 0 1 N N R 38.304 -51.252 12.465 -7.016  -2.741 0.395  C18 2NE 18 
2NE O19 O19 O 0 1 N N N 38.353 -52.517 11.769 -8.011  -3.614 -0.145 O19 2NE 19 
2NE C20 C20 C 0 1 N N S 37.166 -51.181 13.297 -7.443  -1.257 0.242  C20 2NE 20 
2NE O21 O21 O 0 1 N N N 36.038 -51.713 12.560 -8.436  -1.125 -0.777 O21 2NE 21 
2NE P22 P22 P 0 1 N N N 34.899 -52.529 13.291 -9.896  -0.505 -0.504 P22 2NE 22 
2NE O23 O23 O 0 1 N N N 33.941 -53.058 12.254 -10.548 -1.247 0.599  O23 2NE 23 
2NE O24 O24 O 0 1 N N N 35.522 -53.691 14.045 -9.754  1.046  -0.097 O24 2NE 24 
2NE O25 O25 O 0 1 N N N 34.190 -51.588 14.263 -10.791 -0.631 -1.837 O25 2NE 25 
2NE N26 N26 N 0 1 Y N N 39.353 -49.765 10.986 -4.854  -3.889 0.002  N26 2NE 26 
2NE C27 C27 C 0 1 Y N N 40.331 -49.010 11.532 -3.883  -3.812 0.956  C27 2NE 27 
2NE N28 N28 N 0 1 Y N N 41.342 -48.876 10.651 -3.313  -4.972 1.105  N28 2NE 28 
2NE C29 C29 C 0 1 Y N N 41.010 -49.550 9.522  -3.881  -5.866 0.260  C29 2NE 29 
2NE C30 C30 C 0 1 Y N N 41.633 -49.768 8.294  -3.686  -7.230 -0.012 C30 2NE 30 
2NE N31 N31 N 0 1 N N N 42.945 -49.212 7.999  -2.717  -7.955 0.660  N31 2NE 31 
2NE N32 N32 N 0 1 Y N N 41.024 -50.516 7.349  -4.453  -7.809 -0.930 N32 2NE 32 
2NE C33 C33 C 0 1 Y N N 39.812 -51.042 7.594  -5.380  -7.126 -1.576 C33 2NE 33 
2NE N34 N34 N 0 1 Y N N 39.188 -50.849 8.754  -5.598  -5.846 -1.354 N34 2NE 34 
2NE C35 C35 C 0 1 Y N N 39.759 -50.111 9.738  -4.880  -5.183 -0.454 C35 2NE 35 
2NE C36 C36 C 0 1 N N R 43.476 -49.430 14.399 2.105   6.726  -1.488 C36 2NE 36 
2NE O37 O37 O 0 1 N N N 42.205 -49.375 13.885 1.677   7.954  -0.898 O37 2NE 37 
2NE C38 C38 C 0 1 N N N 44.406 -49.948 13.339 3.176   6.102  -0.629 C38 2NE 38 
2NE O39 O39 O 0 1 N N N 45.540 -50.396 13.587 3.432   6.575  0.458  O39 2NE 39 
2NE N40 N40 N 0 1 N N N 43.985 -49.933 11.927 3.848   5.020  -1.069 N40 2NE 40 
2NE C41 C41 C 0 1 N N N 44.943 -50.461 10.986 4.819   4.356  -0.197 C41 2NE 41 
2NE C42 C42 C 0 1 N N N 45.578 -49.364 10.231 5.435   3.165  -0.933 C42 2NE 42 
2NE C43 C43 C 0 1 N N N 46.551 -50.018 9.281  6.435   2.482  -0.035 C43 2NE 43 
2NE O44 O44 O 0 1 N N N 47.155 -51.045 9.634  6.634   2.906  1.083  O44 2NE 44 
2NE N45 N45 N 0 1 N N N 46.778 -49.472 7.941  7.107   1.400  -0.476 N45 2NE 45 
2NE C46 C46 C 0 1 N N N 47.721 -50.167 7.098  8.078   0.735  0.397  C46 2NE 46 
2NE C47 C47 C 0 1 N N N 47.115 -50.413 5.762  8.694   -0.456 -0.339 C47 2NE 47 
2NE S48 S48 S 0 1 N N N 48.397 -50.027 4.604  9.895   -1.276 0.739  S48 2NE 48 
2NE C49 C49 C 0 1 N N N 48.145 -48.369 4.018  10.432  -2.569 -0.330 C49 2NE 49 
2NE O50 O50 O 0 1 N N N 47.798 -47.482 4.806  9.965   -2.668 -1.449 O50 2NE 50 
2NE C51 C51 C 0 1 Y N N 48.521 -48.018 2.585  11.449  -3.534 0.132  C51 2NE 51 
2NE C52 C52 C 0 1 Y N N 49.854 -47.708 2.277  11.879  -4.564 -0.715 C52 2NE 52 
2NE O53 O53 O 0 1 N N N 50.802 -47.722 3.281  11.363  -4.680 -1.964 O53 2NE 53 
2NE C54 C54 C 0 1 Y N N 50.202 -47.399 0.963  12.835  -5.465 -0.270 C54 2NE 54 
2NE C55 C55 C 0 1 Y N N 49.225 -47.393 -0.051 13.359  -5.346 1.002  C55 2NE 55 
2NE C56 C56 C 0 1 Y N N 47.901 -47.699 0.259  12.937  -4.329 1.842  C56 2NE 56 
2NE C57 C57 C 0 1 Y N N 47.552 -48.016 1.574  11.992  -3.422 1.414  C57 2NE 57 
2NE H1  H1  H 0 1 N N N 45.251 -48.912 16.375 0.468   3.881  -2.531 H1  2NE 58 
2NE H2  H2  H 0 1 N N N 46.014 -48.419 14.826 1.782   4.794  -3.310 H2  2NE 59 
2NE H3  H3  H 0 1 N N N 45.533 -47.172 16.027 2.073   3.960  -1.765 H3  2NE 60 
2NE H4  H4  H 0 1 N N N 44.199 -46.025 14.278 -1.094  5.799  -2.369 H4  2NE 61 
2NE H5  H5  H 0 1 N N N 44.625 -47.281 13.067 -0.487  7.385  -1.837 H5  2NE 62 
2NE H6  H6  H 0 1 N N N 42.901 -46.903 13.401 0.091   6.678  -3.365 H6  2NE 63 
2NE H7  H7  H 0 1 N N N 43.253 -46.725 16.510 1.258   4.893  0.343  H7  2NE 64 
2NE H8  H8  H 0 1 N N N 41.912 -47.436 15.549 0.142   6.280  0.349  H8  2NE 65 
2NE H9  H9  H 0 1 N N N 41.328 -49.567 19.646 -0.073  2.177  1.287  H9  2NE 66 
2NE H10 H10 H 0 1 N N N 39.078 -51.820 17.335 -5.358  4.071  0.426  H10 2NE 67 
2NE H11 H11 H 0 1 N N N 37.836 -48.277 14.801 -5.599  0.101  1.818  H11 2NE 68 
2NE H12 H12 H 0 1 N N N 37.148 -49.693 15.664 -6.664  1.232  0.949  H12 2NE 69 
2NE H13 H13 H 0 1 N N N 35.928 -49.533 13.684 -6.261  -0.096 -1.157 H13 2NE 70 
2NE H14 H14 H 0 1 N N N 37.436 -50.433 10.764 -5.951  -2.899 -1.507 H14 2NE 71 
2NE H15 H15 H 0 1 N N N 39.220 -51.118 13.059 -6.813  -2.983 1.439  H15 2NE 72 
2NE H16 H16 H 0 1 N N N 38.458 -53.221 12.398 -7.752  -4.546 -0.154 H16 2NE 73 
2NE H17 H17 H 0 1 N N N 37.319 -51.738 14.233 -7.814  -0.867 1.190  H17 2NE 74 
2NE H18 H18 H 0 1 N N N 35.178 -54.509 13.706 -9.334  1.593  -0.774 H18 2NE 75 
2NE H19 H19 H 0 1 N N N 33.273 -51.517 14.024 -11.686 -0.276 -1.744 H19 2NE 76 
2NE H20 H20 H 0 1 N N N 40.307 -48.580 12.522 -3.625  -2.919 1.506  H20 2NE 77 
2NE H21 H21 H 0 1 N N N 43.223 -49.483 7.077  -2.163  -7.521 1.328  H21 2NE 78 
2NE H22 H22 H 0 1 N N N 42.904 -48.214 8.055  -2.592  -8.896 0.463  H22 2NE 79 
2NE H23 H23 H 0 1 N N N 39.332 -51.636 6.831  -5.982  -7.635 -2.314 H23 2NE 80 
2NE H24 H24 H 0 1 N N N 43.503 -50.133 15.244 2.506   6.920  -2.483 H24 2NE 81 
2NE H25 H25 H 0 1 N N N 41.609 -49.048 14.548 1.309   7.857  -0.009 H25 2NE 82 
2NE H26 H26 H 0 1 N N N 43.094 -49.580 11.640 3.688   4.681  -1.964 H26 2NE 83 
2NE H27 H27 H 0 1 N N N 44.429 -51.134 10.284 5.604   5.061  0.075  H27 2NE 84 
2NE H28 H28 H 0 1 N N N 45.717 -51.021 11.532 4.317   4.005  0.705  H28 2NE 85 
2NE H29 H29 H 0 1 N N N 46.110 -48.687 10.916 4.650   2.460  -1.205 H29 2NE 86 
2NE H30 H30 H 0 1 N N N 44.820 -48.797 9.671  5.937   3.515  -1.835 H30 2NE 87 
2NE H31 H31 H 0 1 N N N 46.300 -48.653 7.624  6.947   1.060  -1.370 H31 2NE 88 
2NE H32 H32 H 0 1 N N N 47.986 -51.129 7.562  8.863   1.441  0.669  H32 2NE 89 
2NE H33 H33 H 0 1 N N N 48.627 -49.554 6.981  7.576   0.385  1.299  H33 2NE 90 
2NE H34 H34 H 0 1 N N N 46.243 -49.761 5.606  7.909   -1.161 -0.611 H34 2NE 91 
2NE H35 H35 H 0 1 N N N 46.808 -51.465 5.664  9.196   -0.105 -1.241 H35 2NE 92 
2NE H36 H36 H 0 1 N N N 50.388 -47.952 4.105  11.853  -4.189 -2.639 H36 2NE 93 
2NE H37 H37 H 0 1 N N N 51.228 -47.163 0.721  13.170  -6.260 -0.920 H37 2NE 94 
2NE H38 H38 H 0 1 N N N 49.501 -47.152 -1.067 14.100  -6.053 1.345  H38 2NE 95 
2NE H39 H39 H 0 1 N N N 47.148 -47.691 -0.515 13.353  -4.245 2.835  H39 2NE 96 
2NE H40 H40 H 0 1 N N N 46.528 -48.261 1.813  11.665  -2.630 2.072  H40 2NE 97 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
2NE C55 C56 DOUB Y N 1   
2NE C55 C54 SING Y N 2   
2NE C56 C57 SING Y N 3   
2NE C54 C52 DOUB Y N 4   
2NE C57 C51 DOUB Y N 5   
2NE C52 C51 SING Y N 6   
2NE C52 O53 SING N N 7   
2NE C51 C49 SING N N 8   
2NE C49 S48 SING N N 9   
2NE C49 O50 DOUB N N 10  
2NE S48 C47 SING N N 11  
2NE C47 C46 SING N N 12  
2NE C46 N45 SING N N 13  
2NE N32 C33 DOUB Y N 14  
2NE N32 C30 SING Y N 15  
2NE C33 N34 SING Y N 16  
2NE N45 C43 SING N N 17  
2NE N31 C30 SING N N 18  
2NE C30 C29 DOUB Y N 19  
2NE N34 C35 DOUB Y N 20  
2NE C43 O44 DOUB N N 21  
2NE C43 C42 SING N N 22  
2NE C29 C35 SING Y N 23  
2NE C29 N28 SING Y N 24  
2NE C35 N26 SING Y N 25  
2NE C42 C41 SING N N 26  
2NE N28 C27 DOUB Y N 27  
2NE C41 N40 SING N N 28  
2NE N26 C27 SING Y N 29  
2NE N26 C17 SING N N 30  
2NE C17 O16 SING N N 31  
2NE C17 C18 SING N N 32  
2NE O19 C18 SING N N 33  
2NE N40 C38 SING N N 34  
2NE O23 P22 DOUB N N 35  
2NE O16 C15 SING N N 36  
2NE C18 C20 SING N N 37  
2NE O21 P22 SING N N 38  
2NE O21 C20 SING N N 39  
2NE P22 O24 SING N N 40  
2NE P22 O25 SING N N 41  
2NE C20 C15 SING N N 42  
2NE C38 O39 DOUB N N 43  
2NE C38 C36 SING N N 44  
2NE C15 C14 SING N N 45  
2NE C03 C02 SING N N 46  
2NE O37 C36 SING N N 47  
2NE C36 C02 SING N N 48  
2NE C14 O13 SING N N 49  
2NE O13 P10 SING N N 50  
2NE C02 C01 SING N N 51  
2NE C02 C04 SING N N 52  
2NE O12 P10 DOUB N N 53  
2NE C04 O05 SING N N 54  
2NE P10 O09 SING N N 55  
2NE P10 O11 SING N N 56  
2NE O09 P06 SING N N 57  
2NE O05 P06 SING N N 58  
2NE P06 O08 DOUB N N 59  
2NE P06 O07 SING N N 60  
2NE C01 H1  SING N N 61  
2NE C01 H2  SING N N 62  
2NE C01 H3  SING N N 63  
2NE C03 H4  SING N N 64  
2NE C03 H5  SING N N 65  
2NE C03 H6  SING N N 66  
2NE C04 H7  SING N N 67  
2NE C04 H8  SING N N 68  
2NE O07 H9  SING N N 69  
2NE O11 H10 SING N N 70  
2NE C14 H11 SING N N 71  
2NE C14 H12 SING N N 72  
2NE C15 H13 SING N N 73  
2NE C17 H14 SING N N 74  
2NE C18 H15 SING N N 75  
2NE O19 H16 SING N N 76  
2NE C20 H17 SING N N 77  
2NE O24 H18 SING N N 78  
2NE O25 H19 SING N N 79  
2NE C27 H20 SING N N 80  
2NE N31 H21 SING N N 81  
2NE N31 H22 SING N N 82  
2NE C33 H23 SING N N 83  
2NE C36 H24 SING N N 84  
2NE O37 H25 SING N N 85  
2NE N40 H26 SING N N 86  
2NE C41 H27 SING N N 87  
2NE C41 H28 SING N N 88  
2NE C42 H29 SING N N 89  
2NE C42 H30 SING N N 90  
2NE N45 H31 SING N N 91  
2NE C46 H32 SING N N 92  
2NE C46 H33 SING N N 93  
2NE C47 H34 SING N N 94  
2NE C47 H35 SING N N 95  
2NE O53 H36 SING N N 96  
2NE C54 H37 SING N N 97  
2NE C55 H38 SING N N 98  
2NE C56 H39 SING N N 99  
2NE C57 H40 SING N N 100 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
2NE SMILES           ACDLabs              12.01 "O=C(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O)c4ccccc4O" 
2NE InChI            InChI                1.03  
;InChI=1S/C28H40N7O18P3S/c1-28(2,22(39)25(40)31-8-7-18(37)30-9-10-57-27(41)15-5-3-4-6-16(15)36)12-50-56(47,48)53-55(45,46)49-11-17-21(52-54(42,43)44)20(38)26(51-17)35-14-34-19-23(29)32-13-33-24(19)35/h3-6,13-14,17,20-22,26,36,38-39H,7-12H2,1-2H3,(H,30,37)(H,31,40)(H,45,46)(H,47,48)(H2,29,32,33)(H2,42,43,44)/t17-,20-,21-,22+,26-/m1/s1
;
2NE InChIKey         InChI                1.03  YTKKDFTVSNSVEE-TYHXJLICSA-N 
2NE SMILES_CANONICAL CACTVS               3.370 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)c4ccccc4O" 
2NE SMILES           CACTVS               3.370 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSC(=O)c4ccccc4O" 
2NE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSC(=O)c4ccccc4O)O" 
2NE SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)c4ccccc4O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
2NE "SYSTEMATIC NAME" ACDLabs              12.01 
;S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} 2-hydroxybenzenecarbothioate (non-preferred name)
;
2NE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 
"S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-oxidanylbenzenecarbothioate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
2NE "Create component" 2012-12-20 PDBJ 
2NE "Initial release"  2013-05-08 RCSB 
# 
