data_ZUD
# 
_chem_comp.id                                    ZUD 
_chem_comp.name                                  Udenafil 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H36 N6 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(3P)-3-(1-methyl-7-oxo-3-propyl-4,7-dihydro-1H-pyrazolo[4,3-d]pyrimidin-5-yl)-N-{2-[(2R)-1-methylpyrrolidin-2-yl]ethyl}-4-propoxybenzene-1-sulfonamide" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-06 
_chem_comp.pdbx_modified_date                    2024-01-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        516.656 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZUD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UGB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZUD N1   N1  N 0 1 Y N N N N N 176.368 193.455 198.358 -3.090 -4.259 -0.703 N1   ZUD 1  
ZUD C2   C1  C 0 1 N N N N N N 175.759 193.391 195.345 0.201  -4.555 -0.826 C2   ZUD 2  
ZUD N3   N2  N 0 1 N N N N N N 179.502 194.836 197.406 -1.495 -1.071 -0.799 N3   ZUD 3  
ZUD C4   C2  C 0 1 Y N N N N N 177.233 193.586 197.385 -2.054 -3.555 -1.081 C4   ZUD 4  
ZUD C5   C3  C 0 1 Y N N N N N 177.996 194.647 199.220 -3.469 -2.164 -0.022 C5   ZUD 5  
ZUD C6   C4  C 0 1 Y N N N N N 178.336 194.370 197.900 -2.241 -2.228 -0.677 C6   ZUD 6  
ZUD O2   O1  O 0 1 N N N N N N 181.327 198.696 194.007 2.356  1.168  -2.917 O2   ZUD 7  
ZUD O4   O2  O 0 1 N N N N N N 182.795 194.959 199.383 -2.768 2.615  0.722  O4   ZUD 8  
ZUD C1   C5  C 0 1 N N N N N N 174.672 192.359 195.639 1.416  -5.094 -1.583 C1   ZUD 9  
ZUD C10  C6  C 0 1 Y N N N N N 182.829 195.768 198.241 -1.576 2.540  0.078  C10  ZUD 10 
ZUD C11  C7  C 0 1 Y N N N N N 184.030 196.247 197.748 -0.792 3.673  -0.070 C11  ZUD 11 
ZUD C12  C8  C 0 1 Y N N N N N 184.043 197.035 196.610 0.424  3.594  -0.722 C12  ZUD 12 
ZUD C13  C9  C 0 1 Y N N N N N 182.860 197.350 195.965 0.867  2.386  -1.232 C13  ZUD 13 
ZUD C14  C10 C 0 1 Y N N N N N 181.660 196.869 196.460 0.100  1.249  -1.095 C14  ZUD 14 
ZUD C15  C11 C 0 1 N N N N N N 182.763 196.577 192.646 3.541  0.678  -0.213 C15  ZUD 15 
ZUD C16  C12 C 0 1 N N N N N N 182.526 196.839 191.161 4.881  0.455  0.492  C16  ZUD 16 
ZUD C17  C13 C 0 1 N N R N N N 183.785 196.471 190.280 4.905  -0.944 1.110  C17  ZUD 17 
ZUD C18  C14 C 0 1 N N N N N N 183.464 196.493 189.054 6.295  -1.228 1.711  C18  ZUD 18 
ZUD C19  C15 C 0 1 N N N N N N 183.693 197.898 188.646 6.038  -1.501 3.210  C19  ZUD 19 
ZUD C20  C16 C 0 1 N N N N N N 184.904 198.328 189.487 4.545  -1.912 3.237  C20  ZUD 20 
ZUD C21  C17 C 0 1 N N N N N N 185.981 197.059 190.559 2.646  -1.565 1.753  C21  ZUD 21 
ZUD C22  C18 C 0 1 N N N N N N 183.559 195.396 200.469 -3.153 3.895  1.226  C22  ZUD 22 
ZUD C23  C19 C 0 1 N N N N N N 183.056 194.651 201.703 -4.514 3.783  1.916  C23  ZUD 23 
ZUD C24  C20 C 0 1 N N N N N N 182.152 195.523 202.576 -4.927 5.155  2.455  C24  ZUD 24 
ZUD C25  C21 C 0 1 N N N N N N 176.065 194.113 200.705 -5.282 -3.826 0.538  C25  ZUD 25 
ZUD C3   C22 C 0 1 N N N N N N 177.097 193.019 195.977 -0.857 -4.086 -1.827 C3   ZUD 26 
ZUD C7   C23 C 0 1 N N N N N N 180.330 195.550 198.159 -1.957 0.102  -0.287 C7   ZUD 27 
ZUD C8   C24 C 0 1 N N N N N N 178.906 195.413 199.988 -3.908 -0.871 0.505  C8   ZUD 28 
ZUD C9   C25 C 0 1 Y N N N N N 181.647 196.077 197.595 -1.131 1.315  -0.438 C9   ZUD 29 
ZUD N2   N3  N 0 1 Y N N N N N 176.796 194.072 199.452 -3.997 -3.422 -0.038 N2   ZUD 30 
ZUD N4   N4  N 0 1 N N N N N N 180.033 195.835 199.429 -3.112 0.197  0.337  N4   ZUD 31 
ZUD N5   N5  N 0 1 N N N N N N 183.668 197.566 193.204 3.569  1.961  -0.919 N5   ZUD 32 
ZUD N6   N6  N 0 1 N N N N N N 184.926 197.579 190.474 3.930  -1.023 2.219  N6   ZUD 33 
ZUD O1   O3  O 0 1 N N N N N N 178.640 195.737 201.323 -4.976 -0.766 1.086  O1   ZUD 34 
ZUD O3   O4  O 0 1 N N N N N N 183.670 199.800 194.776 2.696  3.614  -2.530 O3   ZUD 35 
ZUD S1   S1  S 0 1 N N N N N N 182.877 198.385 194.473 2.420  2.301  -2.062 S1   ZUD 36 
ZUD H23  H1  H 0 1 N N N N N N 175.891 193.465 194.255 -0.216 -5.344 -0.200 H23  ZUD 37 
ZUD H22  H2  H 0 1 N N N N N N 175.439 194.365 195.743 0.505  -3.717 -0.199 H22  ZUD 38 
ZUD H13  H4  H 0 1 N N N N N N 173.731 192.672 195.164 1.111  -5.932 -2.210 H13  ZUD 39 
ZUD H11  H5  H 0 1 N N N N N N 174.977 191.381 195.239 1.833  -4.305 -2.209 H11  ZUD 40 
ZUD H12  H6  H 0 1 N N N N N N 174.525 192.281 196.726 2.170  -5.428 -0.870 H12  ZUD 41 
ZUD H111 H7  H 0 0 N N N N N N 184.955 196.006 198.250 -1.131 4.619  0.326  H111 ZUD 42 
ZUD H121 H8  H 0 0 N N N N N N 184.981 197.406 196.224 1.031  4.480  -0.834 H121 ZUD 43 
ZUD H141 H9  H 0 0 N N N N N N 180.734 197.112 195.960 0.450  0.309  -1.495 H141 ZUD 44 
ZUD H151 H10 H 0 0 N N N N N N 181.802 196.626 193.179 3.368  -0.127 -0.927 H151 ZUD 45 
ZUD H152 H11 H 0 0 N N N N N N 183.201 195.576 192.771 2.739  0.687  0.526  H152 ZUD 46 
ZUD H162 H12 H 0 0 N N N N N N 181.671 196.233 190.827 5.691  0.547  -0.231 H162 ZUD 47 
ZUD H161 H13 H 0 0 N N N N N N 182.296 197.906 191.022 5.007  1.201  1.277  H161 ZUD 48 
ZUD H171 H14 H 0 0 N N N N N N 184.180 195.501 190.615 4.670  -1.690 0.350  H171 ZUD 49 
ZUD H181 H15 H 0 0 N N N N N N 184.099 195.809 188.472 6.740  -2.104 1.237  H181 ZUD 50 
ZUD H182 H16 H 0 0 N N N N N N 182.408 196.215 188.922 6.944  -0.361 1.589  H182 ZUD 51 
ZUD H192 H17 H 0 0 N N N N N N 183.919 197.963 187.571 6.669  -2.316 3.568  H192 ZUD 52 
ZUD H191 H18 H 0 0 N N N N N N 182.816 198.521 188.874 6.201  -0.599 3.800  H191 ZUD 53 
ZUD H202 H19 H 0 0 N N N N N N 185.831 198.218 188.905 4.428  -2.958 2.956  H202 ZUD 54 
ZUD H201 H20 H 0 0 N N N N N N 184.794 199.375 189.806 4.113  -1.726 4.221  H201 ZUD 55 
ZUD H212 H21 H 0 0 N N N N N N 186.759 197.826 190.692 2.780  -2.604 1.449  H212 ZUD 56 
ZUD H213 H22 H 0 0 N N N N N N 185.986 196.379 191.423 1.916  -1.514 2.560  H213 ZUD 57 
ZUD H211 H23 H 0 0 N N N N N N 186.183 196.487 189.641 2.292  -0.981 0.904  H211 ZUD 58 
ZUD H221 H24 H 0 0 N N N N N N 183.434 196.480 200.606 -2.410 4.243  1.943  H221 ZUD 59 
ZUD H222 H25 H 0 0 N N N N N N 184.622 195.168 200.298 -3.222 4.605  0.401  H222 ZUD 60 
ZUD H232 H26 H 0 0 N N N N N N 182.488 193.768 201.376 -5.258 3.436  1.199  H232 ZUD 61 
ZUD H231 H27 H 0 0 N N N N N N 183.922 194.330 202.300 -4.446 3.074  2.741  H231 ZUD 62 
ZUD H243 H28 H 0 0 N N N N N N 181.816 194.945 203.449 -5.897 5.075  2.947  H243 ZUD 63 
ZUD H242 H29 H 0 0 N N N N N N 182.712 196.407 202.915 -4.183 5.502  3.172  H242 ZUD 64 
ZUD H241 H30 H 0 0 N N N N N N 181.278 195.845 201.991 -4.995 5.864  1.630  H241 ZUD 65 
ZUD H253 H31 H 0 0 N N N N N N 175.120 193.560 200.597 -5.136 -4.133 1.574  H253 ZUD 66 
ZUD H251 H32 H 0 0 N N N N N N 176.671 193.651 201.498 -5.976 -2.987 0.502  H251 ZUD 67 
ZUD H252 H33 H 0 0 N N N N N N 175.850 195.159 200.970 -5.690 -4.660 -0.033 H252 ZUD 68 
ZUD H32  H34 H 0 1 N N N N N N 177.176 191.923 196.025 -0.440 -3.297 -2.453 H32  ZUD 69 
ZUD H31  H35 H 0 1 N N N N N N 177.910 193.418 195.352 -1.162 -4.924 -2.453 H31  ZUD 70 
ZUD H51  H36 H 0 1 N N N N N N 184.486 197.111 193.556 4.260  2.611  -0.718 H51  ZUD 71 
ZUD H2   H38 H 0 1 N N N N N N 179.747 194.640 196.456 -0.638 -1.094 -1.251 H2   ZUD 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZUD C1  C2   SING N N 1  
ZUD C10 C11  DOUB Y N 2  
ZUD C10 C9   SING Y N 3  
ZUD C10 O4   SING N N 4  
ZUD C11 C12  SING Y N 5  
ZUD C12 C13  DOUB Y N 6  
ZUD C13 C14  SING Y N 7  
ZUD C13 S1   SING N N 8  
ZUD C14 C9   DOUB Y N 9  
ZUD C15 C16  SING N N 10 
ZUD C15 N5   SING N N 11 
ZUD C16 C17  SING N N 12 
ZUD C17 C18  SING N N 13 
ZUD C17 N6   SING N N 14 
ZUD C18 C19  SING N N 15 
ZUD C19 C20  SING N N 16 
ZUD C2  C3   SING N N 17 
ZUD C20 N6   SING N N 18 
ZUD C21 N6   SING N N 19 
ZUD C22 C23  SING N N 20 
ZUD C22 O4   SING N N 21 
ZUD C23 C24  SING N N 22 
ZUD C25 N2   SING N N 23 
ZUD C3  C4   SING N N 24 
ZUD C4  C6   SING Y N 25 
ZUD C4  N1   DOUB Y N 26 
ZUD C5  C6   DOUB Y N 27 
ZUD C5  C8   SING N N 28 
ZUD C5  N2   SING Y N 29 
ZUD C6  N3   SING N N 30 
ZUD C7  C9   SING N N 31 
ZUD C7  N3   SING N N 32 
ZUD C7  N4   DOUB N N 33 
ZUD C8  N4   SING N N 34 
ZUD C8  O1   DOUB N N 35 
ZUD N1  N2   SING Y N 36 
ZUD N5  S1   SING N N 37 
ZUD O2  S1   DOUB N N 38 
ZUD O3  S1   DOUB N N 39 
ZUD C2  H23  SING N N 40 
ZUD C2  H22  SING N N 41 
ZUD C1  H13  SING N N 42 
ZUD C1  H11  SING N N 43 
ZUD C1  H12  SING N N 44 
ZUD C11 H111 SING N N 45 
ZUD C12 H121 SING N N 46 
ZUD C14 H141 SING N N 47 
ZUD C15 H151 SING N N 48 
ZUD C15 H152 SING N N 49 
ZUD C16 H162 SING N N 50 
ZUD C16 H161 SING N N 51 
ZUD C17 H171 SING N N 52 
ZUD C18 H181 SING N N 53 
ZUD C18 H182 SING N N 54 
ZUD C19 H192 SING N N 55 
ZUD C19 H191 SING N N 56 
ZUD C20 H202 SING N N 57 
ZUD C20 H201 SING N N 58 
ZUD C21 H212 SING N N 59 
ZUD C21 H213 SING N N 60 
ZUD C21 H211 SING N N 61 
ZUD C22 H221 SING N N 62 
ZUD C22 H222 SING N N 63 
ZUD C23 H232 SING N N 64 
ZUD C23 H231 SING N N 65 
ZUD C24 H243 SING N N 66 
ZUD C24 H242 SING N N 67 
ZUD C24 H241 SING N N 68 
ZUD C25 H253 SING N N 69 
ZUD C25 H251 SING N N 70 
ZUD C25 H252 SING N N 71 
ZUD C3  H32  SING N N 72 
ZUD C3  H31  SING N N 73 
ZUD N5  H51  SING N N 74 
ZUD N3  H2   SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZUD SMILES           ACDLabs              12.01 "CN1CCCC1CCNS(=O)(=O)c1cc(C2=NC(=O)c3c(N2)c(nn3C)CCC)c(OCCC)cc1"                                                                                                                                  
ZUD InChI            InChI                1.06  "InChI=1S/C25H36N6O4S/c1-5-8-20-22-23(31(4)29-20)25(32)28-24(27-22)19-16-18(10-11-21(19)35-15-6-2)36(33,34)26-13-12-17-9-7-14-30(17)3/h10-11,16-17,26H,5-9,12-15H2,1-4H3,(H,27,28,32)/t17-/m1/s1" 
ZUD InChIKey         InChI                1.06  IYFNEFQTYQPVOC-QGZVFWFLSA-N                                                                                                                                                                       
ZUD SMILES_CANONICAL CACTVS               3.385 "CCCOc1ccc(cc1C2=NC(=O)c3n(C)nc(CCC)c3N2)[S](=O)(=O)NCC[C@H]4CCCN4C"                                                                                                                              
ZUD SMILES           CACTVS               3.385 "CCCOc1ccc(cc1C2=NC(=O)c3n(C)nc(CCC)c3N2)[S](=O)(=O)NCC[CH]4CCCN4C"                                                                                                                               
ZUD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCc1c2c(n(n1)C)C(=O)N=C(N2)c3cc(ccc3OCCC)S(=O)(=O)NCC[C@H]4CCCN4C"                                                                                                                              
ZUD SMILES           "OpenEye OEToolkits" 2.0.7 "CCCc1c2c(n(n1)C)C(=O)N=C(N2)c3cc(ccc3OCCC)S(=O)(=O)NCCC4CCCN4C"                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZUD "SYSTEMATIC NAME" ACDLabs              12.01 "(3P)-3-(1-methyl-7-oxo-3-propyl-4,7-dihydro-1H-pyrazolo[4,3-d]pyrimidin-5-yl)-N-{2-[(2R)-1-methylpyrrolidin-2-yl]ethyl}-4-propoxybenzene-1-sulfonamide" 
ZUD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-(1-methyl-7-oxidanylidene-3-propyl-4~{H}-pyrazolo[4,3-d]pyrimidin-5-yl)-~{N}-[2-[(2~{R})-1-methylpyrrolidin-2-yl]ethyl]-4-propoxy-benzenesulfonamide" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      ZUD 
_pdbx_chem_comp_synonyms.name         "(3P)-3-(1-methyl-7-oxo-3-propyl-4,7-dihydro-1H-pyrazolo[4,3-d]pyrimidin-5-yl)-N-{2-[(2R)-1-methylpyrrolidin-2-yl]ethyl}-4-propoxybenzene-1-sulfonamide" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZUD "Create component" 2023-10-06 RCSB 
ZUD "Initial release"  2024-01-17 RCSB 
# 
