data_YWD
# 
_chem_comp.id                                    YWD 
_chem_comp.name                                  "3-[(prop-2-yn-1-yl)oxy]propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H8 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-04-01 
_chem_comp.pdbx_modified_date                    2022-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        128.126 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YWD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7MAV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YWD C10  C1  C 0 1 N N N 27.541 -5.719  27.079 2.267  -0.731 0.000  C10  YWD 1  
YWD C01  C10 C 0 1 N N N 25.908 -8.834  28.633 -2.543 0.060  0.000  C01  YWD 2  
YWD C05  C12 C 0 1 N N N 25.176 -7.602  29.140 -1.177 0.696  -0.000 C05  YWD 3  
YWD C08  C15 C 0 1 N N N 26.123 -6.440  28.815 -0.106 -0.396 0.000  C08  YWD 4  
YWD C11  C16 C 0 1 N N N 28.293 -4.734  27.978 3.549  -0.006 -0.000 C11  YWD 5  
YWD C12  C17 C 0 1 N N N 28.874 -3.962  28.667 4.570  0.572  -0.000 C12  YWD 6  
YWD O03  O1  O 0 1 N N N 26.816 -9.240  29.286 -2.649 -1.144 0.000  O03  YWD 7  
YWD O09  O2  O 0 1 N N N 27.081 -6.803  27.842 1.189  0.207  -0.000 O09  YWD 8  
YWD H102 H1  H 0 0 N N N 28.218 -6.086  26.294 2.204  -1.357 -0.890 H102 YWD 9  
YWD H101 H2  H 0 0 N N N 26.684 -5.209  26.615 2.204  -1.357 0.890  H101 YWD 10 
YWD H051 H13 H 0 0 N N N 24.214 -7.478  28.620 -1.065 1.315  -0.890 H051 YWD 11 
YWD H052 H14 H 0 0 N N N 25.001 -7.671  30.224 -1.065 1.315  0.890  H052 YWD 12 
YWD H082 H17 H 0 0 N N N 26.646 -6.138  29.735 -0.218 -1.015 0.890  H082 YWD 13 
YWD H081 H18 H 0 0 N N N 25.532 -5.594  28.435 -0.218 -1.015 -0.890 H081 YWD 14 
YWD H121 H19 H 0 0 N N N 29.393 -3.272  29.282 5.484  1.089  -0.000 H121 YWD 15 
YWD OXT  OXT O 0 1 N Y N 25.532 -9.491  27.387 -3.642 0.831  -0.000 OXT  YWD 16 
YWD HXT  HXT H 0 1 N Y N 26.108 -10.230 27.232 -4.497 0.377  -0.000 HXT  YWD 17 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YWD C10 O09  SING N N 1  
YWD C10 C11  SING N N 2  
YWD O09 C08  SING N N 3  
YWD C11 C12  TRIP N N 4  
YWD C01 C05  SING N N 5  
YWD C01 O03  DOUB N N 6  
YWD C08 C05  SING N N 7  
YWD C10 H102 SING N N 8  
YWD C10 H101 SING N N 9  
YWD C05 H051 SING N N 10 
YWD C05 H052 SING N N 11 
YWD C08 H082 SING N N 12 
YWD C08 H081 SING N N 13 
YWD C12 H121 SING N N 14 
YWD C01 OXT  SING N N 15 
YWD OXT HXT  SING N N 16 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YWD SMILES           ACDLabs              12.01 "O=C(O)CCOCC#C"                                        
YWD InChI            InChI                1.03  "InChI=1S/C6H8O3/c1-2-4-9-5-3-6(7)8/h1H,3-5H2,(H,7,8)" 
YWD InChIKey         InChI                1.03  GMFDYXLFHSFUHE-UHFFFAOYSA-N                            
YWD SMILES_CANONICAL CACTVS               3.385 "OC(=O)CCOCC#C"                                        
YWD SMILES           CACTVS               3.385 "OC(=O)CCOCC#C"                                        
YWD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C#CCOCCC(=O)O"                                        
YWD SMILES           "OpenEye OEToolkits" 2.0.7 "C#CCOCCC(=O)O"                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YWD "SYSTEMATIC NAME" ACDLabs              12.01 "3-[(prop-2-yn-1-yl)oxy]propanoic acid" 
YWD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-prop-2-ynoxypropanoic acid"          
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YWD "Create component" 2021-04-01 RCSB 
YWD "Initial release"  2022-10-12 RCSB 
# 
