data_YLD
# 
_chem_comp.id                                    YLD 
_chem_comp.name                                  "(1R,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H30 F N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-03-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        503.542 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YLD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7M03 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YLD C11 C1  C 0 1 N N S N N N 8.936  19.753 27.802 3.578  0.421  -0.359 C11 YLD 1  
YLD C12 C2  C 0 1 N N N N N N 7.761  19.750 26.721 3.691  -0.777 -1.305 C12 YLD 2  
YLD C13 C3  C 0 1 N N S N N N 7.647  20.999 25.799 3.997  -2.039 -0.496 C13 YLD 3  
YLD C14 C4  C 0 1 N N N N N N 6.597  20.987 24.644 4.109  -3.239 -1.410 C14 YLD 4  
YLD C02 C5  C 0 1 N N N N N N 10.800 23.943 25.849 -2.383 0.290  0.770  C02 YLD 5  
YLD C04 C6  C 0 1 N N S N N N 12.160 22.148 27.026 0.026  0.007  1.003  C04 YLD 6  
YLD C05 C7  C 0 1 N N N N N N 13.230 21.917 28.102 0.187  -1.228 1.891  C05 YLD 7  
YLD C06 C8  C 0 1 N N N N N N 14.680 22.305 27.724 -0.936 -1.260 2.929  C06 YLD 8  
YLD C07 C9  C 0 1 N N N N N N 15.708 22.140 28.898 -0.849 -2.557 3.735  C07 YLD 9  
YLD C08 C10 C 0 1 N N N N N N 15.106 21.533 26.464 -0.795 -0.063 3.871  C08 YLD 10 
YLD C09 C11 C 0 1 N N N N N N 10.799 21.557 27.578 1.199  0.106  0.062  C09 YLD 11 
YLD C16 C12 C 0 1 N N N N N N 5.708  22.473 26.278 5.899  -3.388 0.062  C16 YLD 12 
YLD C17 C13 C 0 1 N N N N N N 7.195  22.208 26.631 5.392  -1.933 0.163  C17 YLD 13 
YLD C19 C14 C 0 1 N N R N N N 9.256  18.338 28.341 3.353  1.696  -1.175 C19 YLD 14 
YLD C23 C15 C 0 1 N N N N N N 11.445 25.954 24.569 -4.744 0.630  0.704  C23 YLD 15 
YLD C24 C16 C 0 1 Y N N N N N 11.461 27.533 24.527 -5.906 0.440  -0.237 C24 YLD 16 
YLD C25 C17 C 0 1 Y N N N N N 12.441 28.256 25.194 -6.610 -0.749 -0.233 C25 YLD 17 
YLD C26 C18 C 0 1 Y N N N N N 12.472 29.679 25.165 -7.677 -0.924 -1.097 C26 YLD 18 
YLD C28 C19 C 0 1 Y N N N N N 11.484 30.397 24.448 -8.039 0.093  -1.964 C28 YLD 19 
YLD C29 C20 C 0 1 Y N N N N N 10.484 29.683 23.767 -7.333 1.281  -1.966 C29 YLD 20 
YLD C30 C21 C 0 1 Y N N N N N 10.485 28.277 23.813 -6.271 1.457  -1.099 C30 YLD 21 
YLD F27 F1  F 0 1 N N N N N N 13.403 30.324 25.800 -8.366 -2.087 -1.095 F27 YLD 22 
YLD N03 N1  N 0 1 N N N N N N 11.943 23.558 26.631 -1.213 -0.105 0.229  N03 YLD 23 
YLD N10 N2  N 0 1 N N N N N N 10.223 20.329 27.261 2.449  0.219  0.552  N10 YLD 24 
YLD N15 N3  N 0 1 N N N N N N 5.500  21.862 24.967 5.185  -3.974 -1.079 N15 YLD 25 
YLD O01 O1  O 0 1 N N N N N N 10.034 23.152 25.423 -2.410 0.739  1.898  O01 YLD 26 
YLD O18 O2  O 0 1 N N N N N N 6.721  20.348 23.665 3.340  -3.501 -2.310 O18 YLD 27 
YLD O20 O3  O 0 1 N N N N N N 10.129 18.443 29.444 4.440  1.877  -2.085 O20 YLD 28 
YLD O21 O4  O 0 1 N N N N N N 10.205 22.315 28.363 1.018  0.084  -1.137 O21 YLD 29 
YLD O22 O5  O 0 1 N N N N N N 10.604 25.332 25.573 -3.522 0.186  0.059  O22 YLD 30 
YLD H1  H1  H 0 1 N N N N N N 8.605  20.373 28.648 4.498  0.516  0.218  H1  YLD 31 
YLD H2  H2  H 0 1 N N N N N N 6.810  19.651 27.265 2.750  -0.907 -1.839 H2  YLD 32 
YLD H3  H3  H 0 1 N N N N N N 7.907  18.872 26.074 4.493  -0.600 -2.021 H3  YLD 33 
YLD H4  H4  H 0 1 N N N N N N 8.638  21.211 25.370 3.229  -2.202 0.259  H4  YLD 34 
YLD H5  H5  H 0 1 N N N N N N 12.438 21.567 26.134 -0.015 0.900  1.627  H5  YLD 35 
YLD H6  H6  H 0 1 N N N N N N 12.946 22.504 28.988 0.139  -2.126 1.276  H6  YLD 36 
YLD H7  H7  H 0 1 N N N N N N 13.225 20.846 28.355 1.151  -1.187 2.399  H7  YLD 37 
YLD H8  H8  H 0 1 N N N N N N 14.669 23.373 27.461 -1.900 -1.212 2.422  H8  YLD 38 
YLD H9  H9  H 0 1 N N N N N N 15.360 22.708 29.773 0.115  -2.606 4.242  H9  YLD 39 
YLD H10 H10 H 0 1 N N N N N N 15.794 21.076 29.163 -1.649 -2.580 4.475  H10 YLD 40 
YLD H11 H11 H 0 1 N N N N N N 16.690 22.520 28.581 -0.950 -3.410 3.064  H11 YLD 41 
YLD H12 H12 H 0 1 N N N N N N 16.136 21.809 26.195 0.169  -0.112 4.378  H12 YLD 42 
YLD H13 H13 H 0 1 N N N N N N 15.055 20.452 26.662 -0.857 0.861  3.297  H13 YLD 43 
YLD H14 H14 H 0 1 N N N N N N 14.431 21.786 25.633 -1.595 -0.086 4.611  H14 YLD 44 
YLD H15 H15 H 0 1 N N N N N N 5.511  23.554 26.233 6.974  -3.401 -0.119 H15 YLD 45 
YLD H16 H16 H 0 1 N N N N N N 5.048  22.011 27.026 5.665  -3.934 0.976  H16 YLD 46 
YLD H17 H17 H 0 1 N N N N N N 7.295  21.986 27.704 6.037  -1.255 -0.395 H17 YLD 47 
YLD H18 H18 H 0 1 N N N N N N 7.805  23.088 26.380 5.308  -1.621 1.204  H18 YLD 48 
YLD S1  S1  S 0 1 N Y N N N N 9.700  17.740 27.573 3.257  3.120  -0.056 S1  YLD 49 
YLD H20 H20 H 0 1 N N N N N N 8.302  17.934 28.711 2.422  1.610  -1.734 H20 YLD 50 
YLD H21 H21 H 0 1 N N N N N N 11.105 25.599 23.585 -4.655 1.686  0.962  H21 YLD 51 
YLD H22 H22 H 0 1 N N N N N N 12.477 25.616 24.744 -4.910 0.047  1.609  H22 YLD 52 
YLD H23 H23 H 0 1 N N N N N N 13.200 27.725 25.749 -6.327 -1.542 0.444  H23 YLD 53 
YLD H24 H24 H 0 1 N N N N N N 11.499 31.477 24.425 -8.871 -0.043 -2.639 H24 YLD 54 
YLD H25 H25 H 0 1 N N N N N N 9.721  30.209 23.213 -7.618 2.077  -2.639 H25 YLD 55 
YLD H26 H26 H 0 1 N N N N N N 9.711  27.741 23.283 -5.721 2.386  -1.101 H26 YLD 56 
YLD H27 H27 H 0 1 N N N N N N 12.603 24.255 26.913 -1.191 -0.464 -0.671 H27 YLD 57 
YLD H28 H28 H 0 1 N N N N N N 10.718 19.765 26.600 2.602  0.166  1.509  H28 YLD 58 
YLD H29 H29 H 0 1 N N N N N N 4.709  22.028 24.378 5.455  -4.786 -1.535 H29 YLD 59 
YLD H30 H30 H 0 1 N N N N N N 10.326 17.575 29.776 4.551  1.151  -2.714 H30 YLD 60 
YLD O1  O6  O 0 1 N Y N N N N ?      ?      ?      4.373  3.139  0.824  O1  YLD 61 
YLD O2  O7  O 0 1 N Y N N N N ?      ?      ?      2.864  4.286  -0.766 O2  YLD 62 
YLD O3  O8  O 0 1 N Y N N N N ?      ?      ?      2.072  2.814  0.848  O3  YLD 63 
YLD H19 H19 H 0 1 N Y N N N N ?      ?      ?      1.895  3.497  1.510  H19 YLD 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YLD O18 C14 DOUB N N 1  
YLD C29 C30 DOUB Y N 2  
YLD C29 C28 SING Y N 3  
YLD C30 C24 SING Y N 4  
YLD C28 C26 DOUB Y N 5  
YLD C24 C23 SING N N 6  
YLD C24 C25 DOUB Y N 7  
YLD C23 O22 SING N N 8  
YLD C14 N15 SING N N 9  
YLD C14 C13 SING N N 10 
YLD N15 C16 SING N N 11 
YLD C26 C25 SING Y N 12 
YLD C26 F27 SING N N 13 
YLD O01 C02 DOUB N N 14 
YLD O22 C02 SING N N 15 
YLD C13 C17 SING N N 16 
YLD C13 C12 SING N N 17 
YLD C02 N03 SING N N 18 
YLD C16 C17 SING N N 19 
YLD C08 C06 SING N N 20 
YLD N03 C04 SING N N 21 
YLD C12 C11 SING N N 22 
YLD C04 C09 SING N N 23 
YLD C04 C05 SING N N 24 
YLD N10 C09 SING N N 25 
YLD N10 C11 SING N N 26 
YLD C09 O21 DOUB N N 27 
YLD C06 C05 SING N N 28 
YLD C06 C07 SING N N 29 
YLD C11 C19 SING N N 30 
YLD C19 O20 SING N N 31 
YLD C11 H1  SING N N 32 
YLD C12 H2  SING N N 33 
YLD C12 H3  SING N N 34 
YLD C13 H4  SING N N 35 
YLD C04 H5  SING N N 36 
YLD C05 H6  SING N N 37 
YLD C05 H7  SING N N 38 
YLD C06 H8  SING N N 39 
YLD C07 H9  SING N N 40 
YLD C07 H10 SING N N 41 
YLD C07 H11 SING N N 42 
YLD C08 H12 SING N N 43 
YLD C08 H13 SING N N 44 
YLD C08 H14 SING N N 45 
YLD C16 H15 SING N N 46 
YLD C16 H16 SING N N 47 
YLD C17 H17 SING N N 48 
YLD C17 H18 SING N N 49 
YLD C19 S1  SING N N 50 
YLD C19 H20 SING N N 51 
YLD C23 H21 SING N N 52 
YLD C23 H22 SING N N 53 
YLD C25 H23 SING N N 54 
YLD C28 H24 SING N N 55 
YLD C29 H25 SING N N 56 
YLD C30 H26 SING N N 57 
YLD N03 H27 SING N N 58 
YLD N10 H28 SING N N 59 
YLD N15 H29 SING N N 60 
YLD O20 H30 SING N N 61 
YLD S1  O1  DOUB N N 62 
YLD S1  O2  DOUB N N 63 
YLD S1  O3  SING N N 64 
YLD O3  H19 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YLD SMILES           ACDLabs              12.01 "CC(C)CC(NC(=O)OCc1cccc(F)c1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"                                                                                                                                                                        
YLD InChI            InChI                1.03  "InChI=1S/C21H30FN3O8S/c1-12(2)8-16(25-21(29)33-11-13-4-3-5-15(22)9-13)19(27)24-17(20(28)34(30,31)32)10-14-6-7-23-18(14)26/h3-5,9,12,14,16-17,20,28H,6-8,10-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t14-,16-,17-,20+/m0/s1" 
YLD InChIKey         InChI                1.03  LNGFVEUFXDACOC-JWWIWJDOSA-N                                                                                                                                                                                                            
YLD SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OCc1cccc(F)c1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O"                                                                                                                                                    
YLD SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OCc1cccc(F)c1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                          
YLD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cccc(c2)F"                                                                                                                                                         
YLD SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cccc(c2)F"                                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YLD "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S)-2-[(N-{[(3-fluorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                                    
YLD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[(3-fluorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YLD "Create component" 2021-03-12 RCSB 
YLD "Initial release"  2021-03-24 RCSB 
YLD "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YLD 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
