data_Y2D
# 
_chem_comp.id                                    Y2D 
_chem_comp.name                                  "1-[(3R,4R)-3-[4-(pyridin-3-yl)-1H-1,2,3-triazol-1-yl]-4-{[4-(trifluoromethyl)phenyl]methoxy}pyrrolidin-1-yl]prop-2-en-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H20 F3 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "1-[(3~{R},4~{R})-3-(4-pyridin-3-yl-1,2,3-triazol-1-yl)-4-[[4-(trifluoromethyl)phenyl]methoxy]pyrrolidin-1-yl]prop-2-en-1-one" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-01-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        443.422 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y2D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LI5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y2D C4  C1  C 0 1 Y N N N N N 5.532  2.710  -30.813 -3.107 1.183  -0.530 C4  Y2D 1  
Y2D C14 C2  C 0 1 Y N N N N N 8.319  -4.317 -33.927 4.458  4.111  0.163  C14 Y2D 2  
Y2D C5  C3  C 0 1 Y N N N N N 4.832  2.611  -32.003 -2.859 -0.154 -0.776 C5  Y2D 3  
Y2D C6  C4  C 0 1 N N N N N N 4.632  1.269  -32.653 -1.458 -0.617 -1.082 C6  Y2D 4  
Y2D C11 C5  C 0 1 Y N N N N N 4.882  -3.066 -32.892 3.152  0.563  0.396  C11 Y2D 5  
Y2D C7  C6  C 0 1 N N R N N N 3.016  -0.506 -32.696 0.549  -1.418 -0.045 C7  Y2D 6  
Y2D C8  C7  C 0 1 N N N N N N 1.501  -0.623 -32.801 0.616  -2.966 -0.047 C8  Y2D 7  
Y2D C9  C8  C 0 1 N N N N N N 2.341  -2.470 -31.446 2.521  -2.154 1.151  C9  Y2D 8  
Y2D C10 C9  C 0 1 N N R N N N 3.466  -1.461 -31.598 1.423  -1.071 1.190  C10 Y2D 9  
Y2D C12 C10 C 0 1 Y N N N N N 6.219  -3.322 -33.015 3.314  1.913  0.513  C12 Y2D 10 
Y2D C13 C11 C 0 1 Y N N N N N 6.926  -4.289 -33.867 4.424  2.729  -0.039 C13 Y2D 11 
Y2D N1  N1  N 0 1 N N N N N N 1.161  -1.686 -31.842 1.992  -3.284 0.374  N1  Y2D 12 
Y2D N2  N2  N 0 1 Y N N N N N 4.733  -2.072 -32.001 2.007  0.266  1.051  N2  Y2D 13 
Y2D C3  C12 C 0 1 Y N N N N N 5.714  3.937  -30.198 -4.393 1.607  -0.249 C3  Y2D 14 
Y2D N3  N3  N 0 1 Y N N N N N 6.863  -2.422 -32.212 2.264  2.356  1.229  N3  Y2D 15 
Y2D C1  C13 C 0 1 N N N N N N 5.377  6.405  -30.120 -6.832 1.156  0.086  C1  Y2D 16 
Y2D C15 C14 C 0 1 Y N N N N N 8.936  -5.217 -34.771 5.512  4.828  -0.377 C15 Y2D 17 
Y2D C16 C15 C 0 1 Y N N N N N 8.163  -6.052 -35.539 6.489  4.160  -1.092 C16 Y2D 18 
Y2D C17 C16 C 0 1 Y N N N N N 6.241  -5.174 -34.688 5.449  2.129  -0.766 C17 Y2D 19 
Y2D C18 C17 C 0 1 N N N N N N -0.105 -1.961 -31.501 2.656  -4.424 0.094  C18 Y2D 20 
Y2D C19 C18 C 0 1 N N N N N N -0.412 -2.919 -30.603 2.004  -5.478 -0.697 C19 Y2D 21 
Y2D C2  C19 C 0 1 Y N N N N N 5.188  5.078  -30.777 -5.431 0.694  -0.220 C2  Y2D 22 
Y2D C20 C20 C 0 1 N N N N N N -1.658 -3.177 -30.262 2.659  -6.603 -0.974 C20 Y2D 23 
Y2D C21 C21 C 0 1 Y N N N N N 4.293  3.758  -32.557 -3.896 -1.068 -0.742 C21 Y2D 24 
Y2D C22 C22 C 0 1 Y N N N N N 4.470  4.991  -31.954 -5.184 -0.642 -0.473 C22 Y2D 25 
Y2D F1  F1  F 0 1 N N N N N N 5.525  7.396  -30.998 -6.781 2.271  0.930  F1  Y2D 26 
Y2D F2  F2  F 0 1 N N N N N N 6.447  6.441  -29.350 -7.480 1.503  -1.105 F2  Y2D 27 
Y2D F3  F3  F 0 1 N N N N N N 4.356  6.746  -29.345 -7.536 0.125  0.717  F3  Y2D 28 
Y2D N4  N4  N 0 1 Y N N N N N 5.971  -1.663 -31.604 1.518  1.354  1.533  N4  Y2D 29 
Y2D N5  N5  N 0 1 Y N N N N N 6.828  -6.051 -35.512 6.430  2.853  -1.266 N5  Y2D 30 
Y2D O1  O1  O 0 1 N N N N N N 3.284  0.868  -32.430 -0.794 -0.964 0.135  O1  Y2D 31 
Y2D O2  O2  O 0 1 N N N N N N -0.996 -1.313 -32.041 3.793  -4.579 0.496  O2  Y2D 32 
Y2D H2  H1  H 0 1 N N N N N N 5.941  1.820  -30.359 -2.296 1.896  -0.552 H2  Y2D 33 
Y2D H12 H2  H 0 1 N N N N N N 8.907  -3.643 -33.321 3.679  4.609  0.722  H12 Y2D 34 
Y2D H4  H3  H 0 1 N N N N N N 5.319  0.533  -32.209 -1.497 -1.488 -1.736 H4  Y2D 35 
Y2D H3  H4  H 0 1 N N N N N N 4.825  1.345  -33.733 -0.911 0.185  -1.578 H3  Y2D 36 
Y2D H11 H5  H 0 1 N N N N N N 4.087  -3.573 -33.418 3.803  -0.127 -0.120 H11 Y2D 37 
Y2D H5  H6  H 0 1 N N N N N N 3.470  -0.811 -33.650 0.980  -1.006 -0.957 H5  Y2D 38 
Y2D H7  H7  H 0 1 N N N N N N 1.015  0.324  -32.524 -0.103 -3.378 0.661  H7  Y2D 39 
Y2D H6  H8  H 0 1 N N N N N N 1.200  -0.905 -33.821 0.427  -3.352 -1.049 H6  Y2D 40 
Y2D H8  H9  H 0 1 N N N N N N 2.257  -2.819 -30.406 3.415  -1.758 0.669  H8  Y2D 41 
Y2D H9  H10 H 0 1 N N N N N N 2.487  -3.333 -32.112 2.759  -2.477 2.165  H9  Y2D 42 
Y2D H10 H11 H 0 1 N N N N N N 3.592  -0.905 -30.657 0.840  -1.144 2.108  H10 Y2D 43 
Y2D H1  H12 H 0 1 N N N N N N 6.264  4.003  -29.271 -4.586 2.651  -0.052 H1  Y2D 44 
Y2D H13 H13 H 0 1 N N N N N N 10.014 -5.264 -34.827 5.570  5.898  -0.242 H13 Y2D 45 
Y2D H14 H14 H 0 1 N N N N N N 8.661  -6.746 -36.200 7.310  4.716  -1.519 H14 Y2D 46 
Y2D H15 H15 H 0 1 N N N N N N 5.162  -5.154 -34.660 5.436  1.062  -0.929 H15 Y2D 47 
Y2D H16 H16 H 0 1 N N N N N N 0.385  -3.490 -30.151 0.994  -5.340 -1.054 H16 Y2D 48 
Y2D H18 H17 H 0 1 N N N N N N -1.871 -3.951 -29.539 3.669  -6.741 -0.617 H18 Y2D 49 
Y2D H17 H18 H 0 1 N N N N N N -2.467 -2.615 -30.705 2.181  -7.377 -1.555 H17 Y2D 50 
Y2D H19 H19 H 0 1 N N N N N N 3.726  3.690  -33.474 -3.702 -2.113 -0.934 H19 Y2D 51 
Y2D H20 H20 H 0 1 N N N N N N 4.049  5.880  -32.401 -5.994 -1.356 -0.446 H20 Y2D 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y2D C16 N5  DOUB Y N 1  
Y2D C16 C15 SING Y N 2  
Y2D N5  C17 SING Y N 3  
Y2D C15 C14 DOUB Y N 4  
Y2D C17 C13 DOUB Y N 5  
Y2D C14 C13 SING Y N 6  
Y2D C13 C12 SING N N 7  
Y2D C12 C11 DOUB Y N 8  
Y2D C12 N3  SING Y N 9  
Y2D C11 N2  SING Y N 10 
Y2D C8  C7  SING N N 11 
Y2D C8  N1  SING N N 12 
Y2D C7  O1  SING N N 13 
Y2D C7  C10 SING N N 14 
Y2D C6  O1  SING N N 15 
Y2D C6  C5  SING N N 16 
Y2D C21 C5  DOUB Y N 17 
Y2D C21 C22 SING Y N 18 
Y2D N3  N4  DOUB Y N 19 
Y2D O2  C18 DOUB N N 20 
Y2D C5  C4  SING Y N 21 
Y2D N2  N4  SING Y N 22 
Y2D N2  C10 SING N N 23 
Y2D C22 C2  DOUB Y N 24 
Y2D N1  C18 SING N N 25 
Y2D N1  C9  SING N N 26 
Y2D C10 C9  SING N N 27 
Y2D C18 C19 SING N N 28 
Y2D F1  C1  SING N N 29 
Y2D C4  C3  DOUB Y N 30 
Y2D C2  C3  SING Y N 31 
Y2D C2  C1  SING N N 32 
Y2D C19 C20 DOUB N N 33 
Y2D C1  F2  SING N N 34 
Y2D C1  F3  SING N N 35 
Y2D C4  H2  SING N N 36 
Y2D C14 H12 SING N N 37 
Y2D C6  H4  SING N N 38 
Y2D C6  H3  SING N N 39 
Y2D C11 H11 SING N N 40 
Y2D C7  H5  SING N N 41 
Y2D C8  H7  SING N N 42 
Y2D C8  H6  SING N N 43 
Y2D C9  H8  SING N N 44 
Y2D C9  H9  SING N N 45 
Y2D C10 H10 SING N N 46 
Y2D C3  H1  SING N N 47 
Y2D C15 H13 SING N N 48 
Y2D C16 H14 SING N N 49 
Y2D C17 H15 SING N N 50 
Y2D C19 H16 SING N N 51 
Y2D C20 H18 SING N N 52 
Y2D C20 H17 SING N N 53 
Y2D C21 H19 SING N N 54 
Y2D C22 H20 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y2D SMILES           ACDLabs              12.01 "c1cc(C(F)(F)F)ccc1COC2C(CN(C2)C(\C=C)=O)n3cc(nn3)c4cccnc4"                                                                                                       
Y2D InChI            InChI                1.03  "InChI=1S/C22H20F3N5O2/c1-2-21(31)29-12-19(30-11-18(27-28-30)16-4-3-9-26-10-16)20(13-29)32-14-15-5-7-17(8-6-15)22(23,24)25/h2-11,19-20H,1,12-14H2/t19-,20-/m1/s1" 
Y2D InChIKey         InChI                1.03  AZGCPBIUNCLWPF-WOJBJXKFSA-N                                                                                                                                       
Y2D SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)c1ccc(CO[C@@H]2CN(C[C@H]2n3cc(nn3)c4cccnc4)C(=O)C=C)cc1"                                                                                                 
Y2D SMILES           CACTVS               3.385 "FC(F)(F)c1ccc(CO[CH]2CN(C[CH]2n3cc(nn3)c4cccnc4)C(=O)C=C)cc1"                                                                                                    
Y2D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C=CC(=O)N1C[C@H]([C@@H](C1)OCc2ccc(cc2)C(F)(F)F)n3cc(nn3)c4cccnc4"                                                                                               
Y2D SMILES           "OpenEye OEToolkits" 2.0.7 "C=CC(=O)N1CC(C(C1)OCc2ccc(cc2)C(F)(F)F)n3cc(nn3)c4cccnc4"                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y2D "SYSTEMATIC NAME" ACDLabs              12.01 "1-[(3R,4R)-3-[4-(pyridin-3-yl)-1H-1,2,3-triazol-1-yl]-4-{[4-(trifluoromethyl)phenyl]methoxy}pyrrolidin-1-yl]prop-2-en-1-one"  
Y2D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(3~{R},4~{R})-3-(4-pyridin-3-yl-1,2,3-triazol-1-yl)-4-[[4-(trifluoromethyl)phenyl]methoxy]pyrrolidin-1-yl]prop-2-en-1-one" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      Y2D 
_pdbx_chem_comp_synonyms.name         "1-[(3~{R},4~{R})-3-(4-pyridin-3-yl-1,2,3-triazol-1-yl)-4-[[4-(trifluoromethyl)phenyl]methoxy]pyrrolidin-1-yl]prop-2-en-1-one" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y2D "Create component" 2021-01-28 RCSB 
Y2D "Modify synonyms"  2021-01-29 RCSB 
Y2D "Initial release"  2022-02-02 RCSB 
Y2D "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Y2D 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C20 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
