data_X2D
# 
_chem_comp.id                                    X2D 
_chem_comp.name                                  "6-{[(3R,4R)-4-(2-{[(1R,2S)-2-(3-chlorophenyl)cyclopropyl]amino}ethoxy)pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H29 Cl N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-04-29 
_chem_comp.pdbx_modified_date                    2012-04-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        400.945 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X2D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3RQL 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X2D N01    N01    N  0 1 Y N N 5.217  5.868  26.618 -4.890 0.897  -1.122 N01    X2D 1  
X2D C02    C02    C  0 1 Y N N 4.874  7.079  27.133 -5.802 1.858  -1.129 C02    X2D 2  
X2D N02    N02    N  0 1 N N N 5.759  8.137  27.132 -6.865 1.792  -2.023 N02    X2D 3  
X2D C03    C03    C  0 1 Y N N 3.585  7.244  27.667 -5.706 2.931  -0.250 C03    X2D 4  
X2D C04    C04    C  0 1 Y N N 2.676  6.178  27.671 -4.643 2.984  0.634  C04    X2D 5  
X2D C05    C05    C  0 1 Y N N 3.056  4.956  27.113 -3.709 1.957  0.609  C05    X2D 6  
X2D C06    C06    C  0 1 Y N N 4.337  4.811  26.591 -3.866 0.922  -0.290 C06    X2D 7  
X2D C07    C07    C  0 1 N N N 1.263  6.336  28.236 -4.503 4.130  1.602  C07    X2D 8  
X2D C08    C08    C  0 1 N N N 4.732  3.457  26.007 -2.856 -0.196 -0.321 C08    X2D 9  
X2D O09    O09    O  0 1 N N N 6.436  1.262  25.704 -1.242 -2.195 -0.443 O09    X2D 10 
X2D "N1'"  "N1'"  N  0 1 N N N 6.849  1.849  28.433 -3.997 -3.055 1.663  "N1'"  X2D 11 
X2D C10    C10    C  0 1 N N N 6.666  0.084  24.930 -0.396 -3.083 -1.177 C10    X2D 12 
X2D C11    C11    C  0 1 N N N 7.721  0.448  23.920 0.984  -2.444 -1.351 C11    X2D 13 
X2D N12    N12    N  0 1 N N N 9.047  0.241  24.485 1.623  -2.294 -0.037 N12    X2D 14 
X2D C13    C13    C  0 1 N N R 10.168 0.708  23.701 2.953  -1.683 -0.165 C13    X2D 15 
X2D C14    C14    C  0 1 N N S 11.313 -0.276 23.820 3.504  -0.930 1.048  C14    X2D 16 
X2D C15    C15    C  0 1 N N N 10.337 -0.380 22.636 4.091  -2.289 0.658  C15    X2D 17 
X2D "C2'"  "C2'"  C  0 1 N N N 5.990  2.989  28.143 -4.183 -1.634 1.272  "C2'"  X2D 18 
X2D C21    C21    C  0 1 Y N N 12.639 0.169  23.309 4.345  0.293  0.784  C21    X2D 19 
X2D C22    C22    C  0 1 Y N N 12.734 1.101  22.277 5.509  0.185  0.048  C22    X2D 20 
X2D C23    C23    C  0 1 Y N N 14.004 1.469  21.848 6.281  1.308  -0.193 C23    X2D 21 
X2D CL23   CL23   CL 0 0 N N N 14.065 2.659  20.504 7.744  1.174  -1.118 CL23   X2D 22 
X2D C24    C24    C  0 1 Y N N 15.164 0.895  22.370 5.886  2.538  0.302  C24    X2D 23 
X2D C25    C25    C  0 1 Y N N 15.075 -0.052 23.413 4.720  2.644  1.038  C25    X2D 24 
X2D C26    C26    C  0 1 Y N N 13.800 -0.409 23.849 3.947  1.523  1.274  C26    X2D 25 
X2D "C3'"  "C3'"  C  0 1 N N R 4.919  2.461  27.159 -3.572 -1.536 -0.143 "C3'"  X2D 26 
X2D "C4'"  "C4'"  C  0 1 N N R 5.451  1.087  26.731 -2.562 -2.699 -0.224 "C4'"  X2D 27 
X2D "C5'"  "C5'"  C  0 1 N N N 6.231  0.620  27.958 -2.647 -3.401 1.148  "C5'"  X2D 28 
X2D HN02   HN02   H  0 0 N N N 6.621  7.851  26.713 -6.936 1.045  -2.638 HN02   X2D 29 
X2D HN0A   HN0A   H  0 0 N N N 5.370  8.896  26.610 -7.535 2.493  -2.032 HN0A   X2D 30 
X2D H03    H03    H  0 1 N N N 3.293  8.199  28.077 -6.451 3.713  -0.258 H03    X2D 31 
X2D H05    H05    H  0 1 N N N 2.361  4.130  27.087 -2.868 1.969  1.286  H05    X2D 32 
X2D H07    H07    H  0 1 N N N 0.585  6.678  27.440 -5.021 3.888  2.530  H07    X2D 33 
X2D H07A   H07A   H  0 0 N N N 0.913  5.368  28.624 -3.447 4.303  1.810  H07A   X2D 34 
X2D H07B   H07B   H  0 0 N N N 1.275  7.075  29.051 -4.939 5.029  1.167  H07B   X2D 35 
X2D H08    H08    H  0 1 N N N 3.941  3.099  25.331 -2.334 -0.188 -1.278 H08    X2D 36 
X2D H08A   H08A   H  0 0 N N N 5.672  3.555  25.444 -2.137 -0.058 0.486  H08A   X2D 37 
X2D "HN1'" "HN1'" H  0 0 N N N 6.990  1.786  29.421 -4.704 -3.641 1.245  "HN1'" X2D 38 
X2D H10    H10    H  0 1 N N N 7.012  -0.740 25.572 -0.295 -4.022 -0.632 H10    X2D 39 
X2D H10A   H10A   H  0 0 N N N 5.742  -0.235 24.427 -0.833 -3.275 -2.156 H10A   X2D 40 
X2D H11    H11    H  0 1 N N N 7.604  -0.185 23.028 1.601  -3.080 -1.985 H11    X2D 41 
X2D H11A   H11A   H  0 0 N N N 7.607  1.506  23.641 0.874  -1.464 -1.816 H11A   X2D 42 
X2D HN12   HN12   H  0 0 N N N 9.075  0.729  25.358 1.039  -1.762 0.591  HN12   X2D 43 
X2D H13    H13    H  0 1 N N N 10.109 1.805  23.749 3.198  -1.294 -1.153 H13    X2D 44 
X2D H14    H14    H  0 1 N N N 11.665 -0.896 24.658 2.880  -0.889 1.941  H14    X2D 45 
X2D H15    H15    H  0 1 N N N 9.669  -1.192 22.313 3.854  -3.141 1.295  H15    X2D 46 
X2D H15A   H15A   H  0 0 N N N 10.501 -0.316 21.550 5.085  -2.298 0.212  H15A   X2D 47 
X2D "H2'"  "H2'"  H  0 1 N N N 5.522  3.369  29.063 -5.243 -1.382 1.246  "H2'"  X2D 48 
X2D "H2'A" "H2'A" H  0 0 N N N 6.567  3.808  27.689 -3.654 -0.977 1.962  "H2'A" X2D 49 
X2D H22    H22    H  0 1 N N N 11.849 1.524  21.825 5.818  -0.775 -0.338 H22    X2D 50 
X2D H24    H24    H  0 1 N N N 16.130 1.175  21.976 6.488  3.414  0.114  H24    X2D 51 
X2D H25    H25    H  0 1 N N N 15.960 -0.483 23.856 4.412  3.604  1.424  H25    X2D 52 
X2D H26    H26    H  0 1 N N N 13.702 -1.153 24.626 3.034  1.607  1.845  H26    X2D 53 
X2D "H3'"  "H3'"  H  0 1 N N N 3.913  2.357  27.591 -4.348 -1.654 -0.899 "H3'"  X2D 54 
X2D "H4'"  "H4'"  H  0 1 N N N 4.650  0.417  26.386 -2.840 -3.388 -1.021 "H4'"  X2D 55 
X2D "H5'"  "H5'"  H  0 1 N N N 6.982  -0.141 27.699 -1.875 -3.021 1.818  "H5'"  X2D 56 
X2D "H5'A" "H5'A" H  0 0 N N N 5.570  0.176  28.717 -2.550 -4.480 1.030  "H5'A" X2D 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X2D C06   N01    DOUB Y N 1  
X2D N01   C02    SING Y N 2  
X2D N02   C02    SING N N 3  
X2D C02   C03    DOUB Y N 4  
X2D N02   HN02   SING N N 5  
X2D N02   HN0A   SING N N 6  
X2D C03   C04    SING Y N 7  
X2D C03   H03    SING N N 8  
X2D C05   C04    DOUB Y N 9  
X2D C04   C07    SING N N 10 
X2D C06   C05    SING Y N 11 
X2D C05   H05    SING N N 12 
X2D C08   C06    SING N N 13 
X2D C07   H07    SING N N 14 
X2D C07   H07A   SING N N 15 
X2D C07   H07B   SING N N 16 
X2D C08   "C3'"  SING N N 17 
X2D C08   H08    SING N N 18 
X2D C08   H08A   SING N N 19 
X2D C10   O09    SING N N 20 
X2D O09   "C4'"  SING N N 21 
X2D "C5'" "N1'"  SING N N 22 
X2D "C2'" "N1'"  SING N N 23 
X2D "N1'" "HN1'" SING N N 24 
X2D C11   C10    SING N N 25 
X2D C10   H10    SING N N 26 
X2D C10   H10A   SING N N 27 
X2D C11   N12    SING N N 28 
X2D C11   H11    SING N N 29 
X2D C11   H11A   SING N N 30 
X2D C13   N12    SING N N 31 
X2D N12   HN12   SING N N 32 
X2D C15   C13    SING N N 33 
X2D C13   C14    SING N N 34 
X2D C13   H13    SING N N 35 
X2D C15   C14    SING N N 36 
X2D C21   C14    SING N N 37 
X2D C14   H14    SING N N 38 
X2D C15   H15    SING N N 39 
X2D C15   H15A   SING N N 40 
X2D "C3'" "C2'"  SING N N 41 
X2D "C2'" "H2'"  SING N N 42 
X2D "C2'" "H2'A" SING N N 43 
X2D C22   C21    DOUB Y N 44 
X2D C21   C26    SING Y N 45 
X2D C23   C22    SING Y N 46 
X2D C22   H22    SING N N 47 
X2D CL23  C23    SING N N 48 
X2D C23   C24    DOUB Y N 49 
X2D C24   C25    SING Y N 50 
X2D C24   H24    SING N N 51 
X2D C25   C26    DOUB Y N 52 
X2D C25   H25    SING N N 53 
X2D C26   H26    SING N N 54 
X2D "C4'" "C3'"  SING N N 55 
X2D "C3'" "H3'"  SING N N 56 
X2D "C4'" "C5'"  SING N N 57 
X2D "C4'" "H4'"  SING N N 58 
X2D "C5'" "H5'"  SING N N 59 
X2D "C5'" "H5'A" SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X2D SMILES           ACDLabs              12.01 "Clc1cccc(c1)C4CC4NCCOC2C(CNC2)Cc3nc(N)cc(c3)C"                                                                                                                                           
X2D SMILES_CANONICAL CACTVS               3.370 "Cc1cc(N)nc(C[C@@H]2CNC[C@@H]2OCCN[C@@H]3C[C@H]3c4cccc(Cl)c4)c1"                                                                                                                          
X2D SMILES           CACTVS               3.370 "Cc1cc(N)nc(C[CH]2CNC[CH]2OCCN[CH]3C[CH]3c4cccc(Cl)c4)c1"                                                                                                                                 
X2D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1cc(nc(c1)N)C[C@@H]2CNC[C@@H]2OCCN[C@@H]3C[C@H]3c4cccc(c4)Cl"                                                                                                                          
X2D SMILES           "OpenEye OEToolkits" 1.7.2 "Cc1cc(nc(c1)N)CC2CNCC2OCCNC3CC3c4cccc(c4)Cl"                                                                                                                                             
X2D InChI            InChI                1.03  "InChI=1S/C22H29ClN4O/c1-14-7-18(27-22(24)8-14)10-16-12-25-13-21(16)28-6-5-26-20-11-19(20)15-3-2-4-17(23)9-15/h2-4,7-9,16,19-21,25-26H,5-6,10-13H2,1H3,(H2,24,27)/t16-,19+,20-,21+/m1/s1" 
X2D InChIKey         InChI                1.03  SLFXGXAWJWFFCO-RCOXNQKVSA-N                                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X2D "SYSTEMATIC NAME" ACDLabs              12.01 "6-{[(3R,4R)-4-(2-{[(1R,2S)-2-(3-chlorophenyl)cyclopropyl]amino}ethoxy)pyrrolidin-3-yl]methyl}-4-methylpyridin-2-amine"  
X2D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "6-[[(3R,4R)-4-[2-[[(1R,2S)-2-(3-chlorophenyl)cyclopropyl]amino]ethoxy]pyrrolidin-3-yl]methyl]-4-methyl-pyridin-2-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X2D "Create component"     2011-04-29 RCSB 
X2D "Modify aromatic_flag" 2011-06-04 RCSB 
X2D "Modify descriptor"    2011-06-04 RCSB 
# 
