data_W7D
# 
_chem_comp.id                                    W7D 
_chem_comp.name                                  "5-[2-(8-methoxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H16 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-03-12 
_chem_comp.pdbx_modified_date                    2014-02-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        340.330 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W7D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3W7D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W7D O   O   O 0 1 N N N 7.243 18.250 14.388 2.004  -2.371 -0.350 O   W7D 1  
W7D C   C   C 0 1 N N N 6.415 17.310 14.457 3.159  -2.009 -0.261 C   W7D 2  
W7D OXT OXT O 0 1 N N N 5.198 17.358 14.597 4.152  -2.918 -0.259 OXT W7D 3  
W7D CA  CA  C 0 1 N N N 7.026 15.917 14.510 3.477  -0.564 -0.160 CA  W7D 4  
W7D N   N   N 0 1 N N N 6.464 15.095 15.534 4.772  -0.151 0.065  N   W7D 5  
W7D CAR CAR C 0 1 N N N 6.797 13.792 15.634 5.080  1.153  0.159  CAR W7D 6  
W7D OAC OAC O 0 1 N N N 6.342 13.055 16.523 6.235  1.475  0.359  OAC W7D 7  
W7D ND2 ND2 N 0 1 N N N 7.646 13.279 14.698 4.145  2.111  0.039  ND2 W7D 8  
W7D CG  CG  C 0 1 N N N 8.233 13.982 13.625 2.855  1.783  -0.183 CG  W7D 9  
W7D OD1 OD1 O 0 1 N N N 9.051 13.485 12.840 2.006  2.648  -0.292 OD1 W7D 10 
W7D CB  CB  C 0 1 N N N 7.911 15.356 13.559 2.494  0.365  -0.295 CB  W7D 11 
W7D CAM CAM C 0 1 N N N 8.306 16.188 12.390 1.067  -0.052 -0.543 CAM W7D 12 
W7D CAL CAL C 0 1 N N N 7.647 15.735 11.048 0.340  -0.201 0.795  CAL W7D 13 
W7D CAT CAT C 0 1 Y N N 6.301 16.109 11.060 -1.087 -0.618 0.547  CAT W7D 14 
W7D CAK CAK C 0 1 Y N N 5.767 17.302 10.462 -2.045 0.336  0.382  CAK W7D 15 
W7D CAW CAW C 0 1 Y N N 4.343 17.645 10.561 -3.375 -0.048 0.151  CAW W7D 16 
W7D CAH CAH C 0 1 Y N N 5.369 15.245 11.694 -1.406 -1.972 0.484  CAH W7D 17 
W7D CAJ CAJ C 0 1 Y N N 4.005 15.634 11.827 -2.685 -2.382 0.261  CAJ W7D 18 
W7D CAV CAV C 0 1 Y N N 3.494 16.777 11.258 -3.701 -1.426 0.092  CAV W7D 19 
W7D CAI CAI C 0 1 Y N N 2.075 17.069 11.406 -5.033 -1.810 -0.139 CAI W7D 20 
W7D CAF CAF C 0 1 Y N N 1.679 18.239 10.798 -5.992 -0.859 -0.304 CAF W7D 21 
W7D CAG CAG C 0 1 Y N N 2.489 19.125 10.096 -5.677 0.496  -0.247 CAG W7D 22 
W7D CAU CAU C 0 1 Y N N 3.881 18.803 9.922  -4.394 0.910  -0.024 CAU W7D 23 
W7D OAP OAP O 0 1 N N N 4.800 19.541 9.327  -4.103 2.236  0.030  OAP W7D 24 
W7D CAA CAA C 0 1 N N N 4.293 20.751 8.671  -5.189 3.147  -0.157 CAA W7D 25 
W7D H1  H1  H 0 1 N N N 4.921 18.265 14.653 3.896  -3.848 -0.330 H1  W7D 26 
W7D H2  H2  H 0 1 N N N 5.816 15.490 16.185 5.474  -0.814 0.158  H2  W7D 27 
W7D H3  H3  H 0 1 N N N 7.875 12.309 14.780 4.399  3.045  0.112  H3  W7D 28 
W7D H4  H4  H 0 1 N N N 9.399 16.132 12.277 0.567  0.706  -1.146 H4  W7D 29 
W7D H5  H5  H 0 1 N N N 8.011 17.229 12.588 1.054  -1.004 -1.073 H5  W7D 30 
W7D H6  H6  H 0 1 N N N 7.727 14.643 10.947 0.840  -0.959 1.397  H6  W7D 31 
W7D H7  H7  H 0 1 N N N 8.158 16.219 10.203 0.354  0.751  1.324  H7  W7D 32 
W7D H8  H8  H 0 1 N N N 6.431 17.964 9.926  -1.783 1.383  0.430  H8  W7D 33 
W7D H9  H9  H 0 1 N N N 5.696 14.289 12.077 -0.626 -2.709 0.613  H9  W7D 34 
W7D H10 H10 H 0 1 N N N 3.342 15.003 12.401 -2.917 -3.435 0.215  H10 W7D 35 
W7D H11 H11 H 0 1 N N N 1.395 16.426 11.944 -5.294 -2.857 -0.187 H11 W7D 36 
W7D H12 H12 H 0 1 N N N 0.632 18.495 10.874 -7.014 -1.160 -0.481 H12 W7D 37 
W7D H13 H13 H 0 1 N N N 2.081 20.038 9.689  -6.458 1.230  -0.381 H13 W7D 38 
W7D H14 H14 H 0 1 N N N 5.129 21.295 8.207  -5.635 2.984  -1.138 H14 W7D 39 
W7D H15 H15 H 0 1 N N N 3.564 20.470 7.897  -5.939 2.980  0.616  H15 W7D 40 
W7D H16 H16 H 0 1 N N N 3.805 21.395 9.417  -4.820 4.170  -0.090 H16 W7D 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W7D CAA OAP SING N N 1  
W7D OAP CAU SING N N 2  
W7D CAU CAG DOUB Y N 3  
W7D CAU CAW SING Y N 4  
W7D CAG CAF SING Y N 5  
W7D CAK CAW DOUB Y N 6  
W7D CAK CAT SING Y N 7  
W7D CAW CAV SING Y N 8  
W7D CAF CAI DOUB Y N 9  
W7D CAL CAT SING N N 10 
W7D CAL CAM SING N N 11 
W7D CAT CAH DOUB Y N 12 
W7D CAV CAI SING Y N 13 
W7D CAV CAJ DOUB Y N 14 
W7D CAH CAJ SING Y N 15 
W7D CAM CB  SING N N 16 
W7D OD1 CG  DOUB N N 17 
W7D CB  CG  SING N N 18 
W7D CB  CA  DOUB N N 19 
W7D CG  ND2 SING N N 20 
W7D O   C   DOUB N N 21 
W7D C   CA  SING N N 22 
W7D C   OXT SING N N 23 
W7D CA  N   SING N N 24 
W7D ND2 CAR SING N N 25 
W7D N   CAR SING N N 26 
W7D CAR OAC DOUB N N 27 
W7D OXT H1  SING N N 28 
W7D N   H2  SING N N 29 
W7D ND2 H3  SING N N 30 
W7D CAM H4  SING N N 31 
W7D CAM H5  SING N N 32 
W7D CAL H6  SING N N 33 
W7D CAL H7  SING N N 34 
W7D CAK H8  SING N N 35 
W7D CAH H9  SING N N 36 
W7D CAJ H10 SING N N 37 
W7D CAI H11 SING N N 38 
W7D CAF H12 SING N N 39 
W7D CAG H13 SING N N 40 
W7D CAA H14 SING N N 41 
W7D CAA H15 SING N N 42 
W7D CAA H16 SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W7D SMILES           ACDLabs              12.01 "O=C1NC(C(=O)O)=C(C(=O)N1)CCc3cc2c(OC)cccc2cc3"                                                                                                 
W7D InChI            InChI                1.03  "InChI=1S/C18H16N2O5/c1-25-14-4-2-3-11-7-5-10(9-13(11)14)6-8-12-15(17(22)23)19-18(24)20-16(12)21/h2-5,7,9H,6,8H2,1H3,(H,22,23)(H2,19,20,21,24)" 
W7D InChIKey         InChI                1.03  OBSDXASMOUFNPX-UHFFFAOYSA-N                                                                                                                     
W7D SMILES_CANONICAL CACTVS               3.370 "COc1cccc2ccc(CCC3=C(NC(=O)NC3=O)C(O)=O)cc12"                                                                                                   
W7D SMILES           CACTVS               3.370 "COc1cccc2ccc(CCC3=C(NC(=O)NC3=O)C(O)=O)cc12"                                                                                                   
W7D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COc1cccc2c1cc(cc2)CCC3=C(NC(=O)NC3=O)C(=O)O"                                                                                                   
W7D SMILES           "OpenEye OEToolkits" 1.7.6 "COc1cccc2c1cc(cc2)CCC3=C(NC(=O)NC3=O)C(=O)O"                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
W7D "SYSTEMATIC NAME" ACDLabs              12.01 "5-[2-(8-methoxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid" 
W7D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-[2-(8-methoxynaphthalen-2-yl)ethyl]-2,4-bis(oxidanylidene)-1H-pyrimidine-6-carboxylic acid"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W7D "Create component" 2013-03-12 PDBJ 
W7D "Initial release"  2014-03-05 RCSB 
# 
