data_VMD
# 
_chem_comp.id                                    VMD 
_chem_comp.name                                  "4-[[1-[3-[[(2~{R})-2-oxidanyl-2-[(4~{S},5~{R})-2,2,5-trimethyl-1,3-dioxolan-4-yl]ethyl]amino]propyl]-1,2,3-triazol-4-yl]methylamino]benzenesulfonamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H32 N6 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-20 
_chem_comp.pdbx_modified_date                    2024-03-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        468.570 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VMD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OGF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VMD O1  O1  O 0 1 N N N N N N 3.905  12.054 13.895 7.258   0.655  1.187  O1  VMD 1  
VMD C13 C1  C 0 1 Y N N N N N -4.317 4.407  14.601 -5.843  -0.363 0.168  C13 VMD 2  
VMD C14 C2  C 0 1 Y N N N N N -5.674 4.348  14.902 -6.695  -1.458 0.249  C14 VMD 3  
VMD C15 C3  C 0 1 Y N N N N N -6.202 3.280  15.581 -8.055  -1.286 0.086  C15 VMD 4  
VMD C16 C4  C 0 1 Y N N N N N -5.366 2.238  15.969 -8.570  -0.025 -0.158 C16 VMD 5  
VMD C21 C5  C 0 1 Y N N N N N -4.011 2.285  15.672 -7.725  1.066  -0.240 C21 VMD 6  
VMD C22 C6  C 0 1 Y N N N N N -3.493 3.367  14.985 -6.364  0.901  -0.078 C22 VMD 7  
VMD C7  C7  C 0 1 N N N N N N -0.894 10.084 14.541 1.141   -0.925 -0.455 C7  VMD 8  
VMD C9  C8  C 0 1 Y N N N N N -2.103 7.886  14.243 -1.244  -0.145 -0.486 C9  VMD 9  
VMD C10 C9  C 0 1 Y N N N N N -1.790 6.777  13.509 -2.149  0.173  0.470  C10 VMD 10 
VMD C11 C10 C 0 1 N N N N N N -2.553 5.509  13.314 -3.570  0.623  0.251  C11 VMD 11 
VMD N4  N1  N 0 1 N N N N N N 0.362  12.531 12.786 4.696   0.360  -0.132 N4  VMD 12 
VMD C2  C11 C 0 1 N N R N N N 2.857  12.486 13.027 7.092   0.863  -0.217 C2  VMD 13 
VMD C3  C12 C 0 1 N N N N N N 1.511  12.301 13.723 5.973   -0.042 -0.738 C3  VMD 14 
VMD C5  C13 C 0 1 N N N N N N -0.536 11.327 12.722 3.597   -0.489 -0.609 C5  VMD 15 
VMD C6  C14 C 0 1 N N N N N N -1.228 11.023 13.387 2.287   -0.041 0.042  C6  VMD 16 
VMD N8  N2  N 0 1 Y N N N N N -1.038 8.697  14.114 -0.113  -0.496 0.169  N8  VMD 17 
VMD N12 N3  N 0 1 N N N N N N -3.805 5.535  13.983 -4.467  -0.533 0.338  N12 VMD 18 
VMD S17 S1  S 0 1 N N N N N N -6.023 0.845  16.842 -10.307 0.190  -0.366 S17 VMD 19 
VMD O18 O2  O 0 1 N N N N N N -7.458 0.924  16.698 -10.820 -1.069 -0.779 O18 VMD 20 
VMD N19 N4  N 0 1 N N N N N N -5.536 -0.461 16.114 -10.946 0.486  1.132  N19 VMD 21 
VMD O20 O3  O 0 1 N N N N N N -5.481 0.927  18.179 -10.476 1.383  -1.118 O20 VMD 22 
VMD N23 N5  N 0 1 Y N N N N N -0.558 6.960  12.973 -1.533  0.009  1.646  N23 VMD 23 
VMD N24 N6  N 0 1 Y N N N N N -0.097 8.131  13.341 -0.328  -0.388 1.433  N24 VMD 24 
VMD C25 C15 C 0 1 N N N N N N 0.837  12.681 10.862 9.045   2.579  0.389  C25 VMD 25 
VMD C26 C16 C 0 1 N N R N N N 1.712  11.963 10.812 9.566   1.340  -0.343 C26 VMD 26 
VMD C27 C17 C 0 1 N N S N N N 2.909  11.707 11.727 8.398   0.526  -0.940 C27 VMD 27 
VMD O28 O4  O 0 1 N N N N N N 4.043  12.086 10.950 8.750   -0.851 -0.721 O28 VMD 28 
VMD C29 C18 C 0 1 N N N N N N 3.662  12.044 9.577  10.040  -0.862 -0.086 C29 VMD 29 
VMD C30 C19 C 0 1 N N N N N N 3.810  10.638 9.056  11.142  -1.011 -1.136 C30 VMD 30 
VMD C31 C20 C 0 1 N N N N N N 4.393  12.935 8.409  10.119  -2.007 0.926  C31 VMD 31 
VMD O32 O5  O 0 1 N N N N N N 2.285  12.410 9.575  10.166  0.408  0.589  O32 VMD 32 
VMD H1  H1  H 0 1 N N N N N N 3.867  12.545 14.707 7.491   -0.252 1.426  H1  VMD 33 
VMD H2  H2  H 0 1 N N N N N N -6.322 5.156  14.596 -6.293  -2.442 0.439  H2  VMD 34 
VMD H3  H3  H 0 1 N N N N N N -7.256 3.248  15.812 -8.718  -2.136 0.149  H3  VMD 35 
VMD H4  H4  H 0 1 N N N N N N -3.362 1.477  15.977 -8.130  2.049  -0.431 H4  VMD 36 
VMD H5  H5  H 0 1 N N N N N N -2.440 3.399  14.748 -5.704  1.754  -0.141 H5  VMD 37 
VMD H6  H6  H 0 1 N N N N N N 0.142  10.260 14.865 1.058   -0.836 -1.538 H6  VMD 38 
VMD H7  H7  H 0 1 N N N N N N -1.578 10.280 15.380 1.342   -1.963 -0.191 H7  VMD 39 
VMD H8  H8  H 0 1 N N N N N N -3.007 8.071  14.804 -1.396  -0.127 -1.555 H8  VMD 40 
VMD H9  H9  H 0 1 N N N N N N -2.728 5.361  12.238 -3.842  1.351  1.015  H9  VMD 41 
VMD H10 H10 H 0 1 N N N N N N -1.957 4.672  13.707 -3.660  1.079  -0.734 H10 VMD 42 
VMD H11 H11 H 0 1 N N N N N N 0.720  12.720 11.872 4.504   1.335  -0.308 H11 VMD 43 
VMD H13 H13 H 0 1 N N N N N N 2.984  13.554 12.798 6.832   1.905  -0.402 H13 VMD 44 
VMD H14 H14 H 0 1 N N N N N N 1.440  13.016 14.556 6.190   -1.077 -0.474 H14 VMD 45 
VMD H15 H15 H 0 1 N N N N N N 1.451  11.275 14.115 5.906   0.050  -1.821 H15 VMD 46 
VMD H16 H16 H 0 1 N N N N N N -1.093 11.449 11.781 3.513   -0.400 -1.692 H16 VMD 47 
VMD H17 H17 H 0 1 N N N N N N 0.153  10.474 12.632 3.798   -1.527 -0.345 H17 VMD 48 
VMD H18 H18 H 0 1 N N N N N N -1.636 11.937 13.844 2.086   0.997  -0.222 H18 VMD 49 
VMD H19 H19 H 0 1 N N N N N N -2.015 10.523 12.803 2.371   -0.130 1.125  H19 VMD 50 
VMD H20 H20 H 0 1 N N N N N N -3.732 6.237  14.692 -4.105  -1.416 0.513  H20 VMD 51 
VMD H21 H21 H 0 1 N N N N N N -5.896 -1.263 16.591 -10.368 0.513  1.911  H21 VMD 52 
VMD H22 H22 H 0 1 N N N N N N -5.866 -0.459 15.170 -11.900 0.634  1.232  H22 VMD 53 
VMD H23 H23 H 0 1 N N N N N N 0.255  12.488 11.775 8.382   2.271  1.197  H23 VMD 54 
VMD H24 H24 H 0 1 N N N N N N 1.212  13.715 10.878 9.886   3.137  0.802  H24 VMD 55 
VMD H25 H25 H 0 1 N N N N N N 0.194  12.537 9.981  8.498   3.211  -0.310 H25 VMD 56 
VMD H26 H26 H 0 1 N N N N N N 1.329  10.955 10.594 10.276  1.623  -1.120 H26 VMD 57 
VMD H27 H27 H 0 1 N N N N N N 2.952  10.632 11.958 8.302   0.729  -2.007 H27 VMD 58 
VMD H28 H28 H 0 1 N N N N N N 3.350  9.933  9.765  11.094  -0.176 -1.834 H28 VMD 59 
VMD H29 H29 H 0 1 N N N N N N 3.310  10.554 8.080  12.115  -1.018 -0.644 H29 VMD 60 
VMD H30 H30 H 0 1 N N N N N N 4.878  10.400 8.943  11.003  -1.946 -1.678 H30 VMD 61 
VMD H31 H31 H 0 1 N N N N N N 4.350  14.001 8.679  9.965   -2.956 0.413  H31 VMD 62 
VMD H32 H32 H 0 1 N N N N N N 5.444  12.623 8.314  11.100  -2.005 1.401  H32 VMD 63 
VMD H33 H33 H 0 1 N N N N N N 3.876  12.778 7.451  9.348   -1.875 1.685  H33 VMD 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VMD C31 C29 SING N N 1  
VMD C30 C29 SING N N 2  
VMD O32 C29 SING N N 3  
VMD O32 C26 SING N N 4  
VMD C29 O28 SING N N 5  
VMD C26 C25 SING N N 6  
VMD C26 C27 SING N N 7  
VMD O28 C27 SING N N 8  
VMD C27 C2  SING N N 9  
VMD C5  N4  SING N N 10 
VMD C5  C6  SING N N 11 
VMD N4  C3  SING N N 12 
VMD N23 N24 DOUB Y N 13 
VMD N23 C10 SING Y N 14 
VMD C2  C3  SING N N 15 
VMD C2  O1  SING N N 16 
VMD C11 C10 SING N N 17 
VMD C11 N12 SING N N 18 
VMD N24 N8  SING Y N 19 
VMD C6  C7  SING N N 20 
VMD C10 C9  DOUB Y N 21 
VMD N12 C13 SING N N 22 
VMD N8  C9  SING Y N 23 
VMD N8  C7  SING N N 24 
VMD C13 C14 DOUB Y N 25 
VMD C13 C22 SING Y N 26 
VMD C14 C15 SING Y N 27 
VMD C22 C21 DOUB Y N 28 
VMD C15 C16 DOUB Y N 29 
VMD C21 C16 SING Y N 30 
VMD C16 S17 SING N N 31 
VMD N19 S17 SING N N 32 
VMD O18 S17 DOUB N N 33 
VMD S17 O20 DOUB N N 34 
VMD O1  H1  SING N N 35 
VMD C14 H2  SING N N 36 
VMD C15 H3  SING N N 37 
VMD C21 H4  SING N N 38 
VMD C22 H5  SING N N 39 
VMD C7  H6  SING N N 40 
VMD C7  H7  SING N N 41 
VMD C9  H8  SING N N 42 
VMD C11 H9  SING N N 43 
VMD C11 H10 SING N N 44 
VMD N4  H11 SING N N 45 
VMD C2  H13 SING N N 46 
VMD C3  H14 SING N N 47 
VMD C3  H15 SING N N 48 
VMD C5  H16 SING N N 49 
VMD C5  H17 SING N N 50 
VMD C6  H18 SING N N 51 
VMD C6  H19 SING N N 52 
VMD N12 H20 SING N N 53 
VMD N19 H21 SING N N 54 
VMD N19 H22 SING N N 55 
VMD C25 H23 SING N N 56 
VMD C25 H24 SING N N 57 
VMD C25 H25 SING N N 58 
VMD C26 H26 SING N N 59 
VMD C27 H27 SING N N 60 
VMD C30 H28 SING N N 61 
VMD C30 H29 SING N N 62 
VMD C30 H30 SING N N 63 
VMD C31 H31 SING N N 64 
VMD C31 H32 SING N N 65 
VMD C31 H33 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VMD InChI            InChI                1.06  "InChI=1S/C20H32N6O5S/c1-14-19(31-20(2,3)30-14)18(27)12-22-9-4-10-26-13-16(24-25-26)11-23-15-5-7-17(8-6-15)32(21,28)29/h5-8,13-14,18-19,22-23,27H,4,9-12H2,1-3H3,(H2,21,28,29)/t14-,18-,19-/m1/s1" 
VMD InChIKey         InChI                1.06  FIIMEVMRINWZGW-NIKGAXFTSA-N                                                                                                                                                                        
VMD SMILES_CANONICAL CACTVS               3.385 "C[C@H]1OC(C)(C)O[C@H]1[C@H](O)CNCCCn2cc(CNc3ccc(cc3)[S](N)(=O)=O)nn2"                                                                                                                             
VMD SMILES           CACTVS               3.385 "C[CH]1OC(C)(C)O[CH]1[CH](O)CNCCCn2cc(CNc3ccc(cc3)[S](N)(=O)=O)nn2"                                                                                                                                
VMD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1[C@@H](OC(O1)(C)C)[C@@H](CNCCCn2cc(nn2)CNc3ccc(cc3)S(=O)(=O)N)O"                                                                                                                          
VMD SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(OC(O1)(C)C)C(CNCCCn2cc(nn2)CNc3ccc(cc3)S(=O)(=O)N)O"                                                                                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           VMD 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-[[1-[3-[[(2~{R})-2-oxidanyl-2-[(4~{S},5~{R})-2,2,5-trimethyl-1,3-dioxolan-4-yl]ethyl]amino]propyl]-1,2,3-triazol-4-yl]methylamino]benzenesulfonamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VMD "Create component" 2023-03-20 PDBE 
VMD "Initial release"  2024-03-27 RCSB 
# 
