data_U2D
#

_chem_comp.id                                   U2D
_chem_comp.name                                 6-O-decanoyl-alpha-D-glucopyranose
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C16 H30 O7"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-09
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       334.405
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    U2D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MNA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U2D  C1   C1   C  0  1  N  N  S  -28.134  11.520  31.851  -4.796   1.719  -0.355  C1   U2D   1  
U2D  C2   C2   C  0  1  N  N  R  -28.769  10.089  32.096  -6.023   0.846  -0.629  C2   U2D   2  
U2D  C3   C3   C  0  1  N  N  S  -29.898   9.786  31.060  -5.946  -0.417   0.235  C3   U2D   3  
U2D  C4   C4   C  0  1  N  N  S  -30.495  11.127  30.734  -4.634  -1.148  -0.064  C4   U2D   4  
U2D  C5   C5   C  0  1  N  N  R  -29.346  11.785  29.878  -3.460  -0.198   0.189  C5   U2D   5  
U2D  C6   C6   C  0  1  N  N  N  -29.509  13.262  29.580  -2.148  -0.901  -0.166  C6   U2D   6  
U2D  CAX  CAX  C  0  1  N  N  N  -29.206  13.564  27.223   0.201  -0.518  -0.065  CAX  U2D   7  
U2D  CAY  CAY  C  0  1  N  N  N  -29.401  15.034  26.900   1.411   0.316   0.271  CAY  U2D   8  
U2D  CAZ  CAZ  C  0  1  N  N  N  -30.577  15.264  25.953   2.680  -0.450  -0.110  CAZ  U2D   9  
U2D  CBA  CBA  C  0  1  N  N  N  -30.245  14.924  24.511   3.908   0.396   0.231  CBA  U2D  10  
U2D  CBB  CBB  C  0  1  N  N  N  -30.873  13.581  24.043   5.177  -0.370  -0.149  CBB  U2D  11  
U2D  CBC  CBC  C  0  1  N  N  N  -30.528  13.660  22.554   6.405   0.476   0.192  CBC  U2D  12  
U2D  CBD  CBD  C  0  1  N  N  N  -30.838  12.327  21.934   7.674  -0.290  -0.189  CBD  U2D  13  
U2D  CBE  CBE  C  0  1  N  N  N  -30.209  12.355  20.492   8.902   0.557   0.152  CBE  U2D  14  
U2D  CBF  CBF  C  0  1  N  N  N  -30.919  13.462  19.730  10.170  -0.209  -0.228  CBF  U2D  15  
U2D  CBG  CBG  C  0  1  N  N  N  -32.453  13.233  19.659  11.399   0.637   0.113  CBG  U2D  16  
U2D  O11  O11  O  0  1  N  N  N  -30.466  12.892  27.177   0.340  -1.612  -0.558  O11  U2D  17  
U2D  O2   O2   O  0  1  N  N  N  -27.813   9.014  32.014  -7.209   1.574  -0.308  O2   U2D  18  
U2D  O3   O3   O  0  1  N  N  N  -30.848   8.791  31.531  -7.050  -1.272  -0.068  O3   U2D  19  
U2D  O4   O4   O  0  1  N  N  N  -31.722  11.024  29.987  -4.518  -2.289   0.788  O4   U2D  20  
U2D  O5   O5   O  0  1  N  N  N  -27.998  11.704  30.462  -3.610   0.969  -0.624  O5   U2D  21  
U2D  O6   O6   O  0  1  N  N  N  -28.580  13.495  28.516  -1.030  -0.044   0.184  O6   U2D  22  
U2D  H1   H1   H  0  1  N  N  N  -28.855  12.256  32.238  -4.824   2.598  -0.999  H1   U2D  23  
U2D  H2   H2   H  0  1  N  N  N  -29.225  10.096  33.097  -6.042   0.565  -1.683  H2   U2D  24  
U2D  H3   H3   H  0  1  N  N  N  -29.411   9.402  30.151  -5.978  -0.139   1.289  H3   U2D  25  
U2D  H4   H4   H  0  1  N  N  N  -30.640  11.711  31.655  -4.625  -1.468  -1.106  H4   U2D  26  
U2D  H5   H5   H  0  1  N  N  N  -29.329  11.256  28.914  -3.446   0.091   1.240  H5   U2D  27  
U2D  H61  H62  H  0  1  N  N  N  -29.258  13.871  30.461  -2.077  -1.837   0.389  H61  U2D  28  
U2D  H62  H61  H  0  1  N  N  N  -30.537  13.487  29.260  -2.126  -1.111  -1.235  H62  U2D  29  
U2D  H64  H64  H  0  1  N  N  N  -28.485  15.418  26.427   1.372   1.253  -0.284  H64  U2D  30  
U2D  HAY  HAY  H  0  1  N  N  N  -29.587  15.581  27.836   1.421   0.527   1.340  HAY  U2D  31  
U2D  H65  H65  H  0  1  N  N  N  -30.869  16.323  26.006   2.719  -1.387   0.445  H65  U2D  32  
U2D  HAZ  HAZ  H  0  1  N  N  N  -31.418  14.634  26.278   2.670  -0.661  -1.179  HAZ  U2D  33  
U2D  H66  H66  H  0  1  N  N  N  -29.152  14.854  24.410   3.869   1.333  -0.324  H66  U2D  34  
U2D  HBA  HBA  H  0  1  N  N  N  -30.622  15.731  23.865   3.918   0.607   1.301  HBA  U2D  35  
U2D  HBB  HBB  H  0  1  N  N  N  -31.959  13.552  24.214   5.216  -1.307   0.406  HBB  U2D  36  
U2D  H67  H67  H  0  1  N  N  N  -30.402  12.714  24.530   5.167  -0.581  -1.219  H67  U2D  37  
U2D  HBC  HBC  H  0  1  N  N  N  -29.459  13.890  22.430   6.366   1.413  -0.363  HBC  U2D  38  
U2D  H68  H68  H  0  1  N  N  N  -31.130  14.445  22.072   6.415   0.688   1.261  H68  U2D  39  
U2D  H69  H69  H  0  1  N  N  N  -31.926  12.179  21.872   7.713  -1.227   0.366  H69  U2D  40  
U2D  HBD  HBD  H  0  1  N  N  N  -30.391  11.517  22.529   7.663  -0.501  -1.258  HBD  U2D  41  
U2D  HBE  HBE  H  0  1  N  N  N  -30.366  11.388  19.991   8.863   1.494  -0.403  HBE  U2D  42  
U2D  H7A  H7A  H  0  1  N  N  N  -29.131  12.567  20.552   8.912   0.768   1.222  H7A  U2D  43  
U2D  H7B  H7B  H  0  1  N  N  N  -30.519  13.501  18.706  10.209  -1.147   0.327  H7B  U2D  44  
U2D  HBF  HBF  H  0  1  N  N  N  -30.727  14.420  20.235  10.160  -0.421  -1.298  HBF  U2D  45  
U2D  H7G  H7G  H  0  1  N  N  N  -32.922  14.056  19.100  12.302   0.091  -0.158  H7G  U2D  46  
U2D  H7C  H7C  H  0  1  N  N  N  -32.658  12.280  19.149  11.360   1.574  -0.442  H7C  U2D  47  
U2D  HBG  HBG  H  0  1  N  N  N  -32.866  13.200  20.678  11.409   0.848   1.182  HBG  U2D  48  
U2D  HO2  HO2  H  0  1  N  Y  N  -27.110   9.167  32.634  -7.320   2.390  -0.816  HO2  U2D  49  
U2D  HO3  HO3  H  0  1  N  Y  N  -30.392   7.978  31.713  -7.915  -0.870   0.091  HO3  U2D  50  
U2D  HO4  HO4  H  0  1  N  Y  N  -32.391  10.625  30.530  -5.233  -2.932   0.683  HO4  U2D  51  
U2D  O1   O1   O  0  1  N  Y  N  -26.871  11.713  32.544  -4.800   2.130   1.014  O1   U2D  52  
U2D  HO1  HO1  H  0  1  N  Y  N  -26.998  11.582  33.476  -4.049   2.687   1.259  HO1  U2D  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U2D  CBG  CBF  SING  N  N   1  
U2D  CBF  CBE  SING  N  N   2  
U2D  CBE  CBD  SING  N  N   3  
U2D  CBD  CBC  SING  N  N   4  
U2D  CBC  CBB  SING  N  N   5  
U2D  CBB  CBA  SING  N  N   6  
U2D  CBA  CAZ  SING  N  N   7  
U2D  CAZ  CAY  SING  N  N   8  
U2D  CAY  CAX  SING  N  N   9  
U2D  O11  CAX  DOUB  N  N  10  
U2D  CAX  O6   SING  N  N  11  
U2D  O6   C6   SING  N  N  12  
U2D  C6   C5   SING  N  N  13  
U2D  C5   O5   SING  N  N  14  
U2D  C5   C4   SING  N  N  15  
U2D  O4   C4   SING  N  N  16  
U2D  O5   C1   SING  N  N  17  
U2D  C4   C3   SING  N  N  18  
U2D  C3   O3   SING  N  N  19  
U2D  C3   C2   SING  N  N  20  
U2D  C1   C2   SING  N  N  21  
U2D  O2   C2   SING  N  N  22  
U2D  C1   H1   SING  N  N  23  
U2D  C2   H2   SING  N  N  24  
U2D  C3   H3   SING  N  N  25  
U2D  C4   H4   SING  N  N  26  
U2D  C5   H5   SING  N  N  27  
U2D  C6   H61  SING  N  N  28  
U2D  C6   H62  SING  N  N  29  
U2D  CAY  H64  SING  N  N  30  
U2D  CAY  HAY  SING  N  N  31  
U2D  CAZ  H65  SING  N  N  32  
U2D  CAZ  HAZ  SING  N  N  33  
U2D  CBA  H66  SING  N  N  34  
U2D  CBA  HBA  SING  N  N  35  
U2D  CBB  HBB  SING  N  N  36  
U2D  CBB  H67  SING  N  N  37  
U2D  CBC  HBC  SING  N  N  38  
U2D  CBC  H68  SING  N  N  39  
U2D  CBD  H69  SING  N  N  40  
U2D  CBD  HBD  SING  N  N  41  
U2D  CBE  HBE  SING  N  N  42  
U2D  CBE  H7A  SING  N  N  43  
U2D  CBF  H7B  SING  N  N  44  
U2D  CBF  HBF  SING  N  N  45  
U2D  CBG  H7G  SING  N  N  46  
U2D  CBG  H7C  SING  N  N  47  
U2D  CBG  HBG  SING  N  N  48  
U2D  O2   HO2  SING  N  N  49  
U2D  O3   HO3  SING  N  N  50  
U2D  O4   HO4  SING  N  N  51  
U2D  C1   O1   SING  N  N  52  
U2D  O1   HO1  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U2D  SMILES            ACDLabs               12.01  "C1(C(C(O)C(C(O1)COC(CCCCCCCCC)=O)O)O)O"  
U2D  InChI             InChI                 1.03   "InChI=1S/C16H30O7/c1-2-3-4-5-6-7-8-9-12(17)22-10-11-13(18)14(19)15(20)16(21)23-11/h11,13-16,18-21H,2-10H2,1H3/t11-,13-,14+,15-,16+/m1/s1"  
U2D  InChIKey          InChI                 1.03   WVGXAJWVJXKEID-JZYAIQKZSA-N  
U2D  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCCCC(=O)OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O"  
U2D  SMILES            CACTVS                3.385  "CCCCCCCCCC(=O)OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O"  
U2D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCC(=O)OC[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O"  
U2D  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCC(=O)OCC1C(C(C(C(O1)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
U2D  "SYSTEMATIC NAME"  ACDLabs               12.01  6-O-decanoyl-alpha-D-glucopyranose  
U2D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{R},3~{S},4~{S},5~{R},6~{S})-3,4,5,6-tetrakis(oxidanyl)oxan-2-yl]methyl decanoate"  
#
_pdbx_chem_comp_related.comp_id            U2D
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  U2D  C1   GLC  C1   "Carbohydrate core"  
 2  U2D  C2   GLC  C2   "Carbohydrate core"  
 3  U2D  C3   GLC  C3   "Carbohydrate core"  
 4  U2D  C4   GLC  C4   "Carbohydrate core"  
 5  U2D  C5   GLC  C5   "Carbohydrate core"  
 6  U2D  C6   GLC  C6   "Carbohydrate core"  
 7  U2D  O1   GLC  O1   "Carbohydrate core"  
 8  U2D  O2   GLC  O2   "Carbohydrate core"  
 9  U2D  O3   GLC  O3   "Carbohydrate core"  
10  U2D  O4   GLC  O4   "Carbohydrate core"  
11  U2D  O5   GLC  O5   "Carbohydrate core"  
12  U2D  O6   GLC  O6   "Carbohydrate core"  
13  U2D  H1   GLC  H1   "Carbohydrate core"  
14  U2D  H2   GLC  H2   "Carbohydrate core"  
15  U2D  H3   GLC  H3   "Carbohydrate core"  
16  U2D  H4   GLC  H4   "Carbohydrate core"  
17  U2D  H5   GLC  H5   "Carbohydrate core"  
18  U2D  H62  GLC  H62  "Carbohydrate core"  
19  U2D  H61  GLC  H61  "Carbohydrate core"  
20  U2D  HO1  GLC  HO1  "Carbohydrate core"  
21  U2D  HO2  GLC  HO2  "Carbohydrate core"  
22  U2D  HO3  GLC  HO3  "Carbohydrate core"  
23  U2D  HO4  GLC  HO4  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
U2D  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
U2D  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
U2D  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
U2D  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U2D  "Create component"          2020-04-09  RCSB  
U2D  "Modify atom id"            2020-07-17  RCSB  
U2D  "Modify component atom id"  2020-07-17  RCSB  
U2D  "Initial release"           2020-07-29  RCSB  
##
