data_TKD
# 
_chem_comp.id                                    TKD 
_chem_comp.name                                  "(1R,3R,7E,17beta)-17-{(2R,6S)-6-hydroxy-7-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hept-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C36 H52 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-06-07 
_chem_comp.pdbx_modified_date                    2013-06-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        532.796 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     TKD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3VTD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TKD C29 C29 C 0 1 N N N 9.350  -2.845 27.992 6.423  -1.083 0.009  C29 TKD 1  
TKD C30 C30 C 0 1 N N N 8.731  -2.941 29.438 7.033  -0.456 1.264  C30 TKD 2  
TKD C31 C31 C 0 1 N N N 7.544  -1.926 29.584 8.406  -1.078 1.529  C31 TKD 3  
TKD C32 C32 C 0 1 N N N 8.079  -0.463 29.364 8.252  -2.586 1.736  C32 TKD 4  
TKD C33 C33 C 0 1 N N N 8.691  -0.338 27.935 7.641  -3.213 0.481  C33 TKD 5  
TKD C34 C34 C 0 1 N N N 9.861  -1.367 27.783 6.268  -2.591 0.216  C34 TKD 6  
TKD C37 C37 C 0 1 N N N 8.218  -3.122 26.926 7.339  -0.824 -1.188 C37 TKD 7  
TKD C36 C36 C 0 1 N N N 6.438  -2.259 28.517 9.323  -0.818 0.331  C36 TKD 8  
TKD C38 C38 C 0 1 N N N 7.591  -0.645 26.871 8.557  -2.954 -0.717 C38 TKD 9  
TKD C35 C35 C 0 1 N N N 7.040  -2.104 27.082 8.712  -1.445 -0.924 C35 TKD 10 
TKD C26 C26 C 0 1 N N N 10.479 -3.910 27.714 5.050  -0.461 -0.255 C26 TKD 11 
TKD C25 C25 C 0 1 N N S 11.646 -4.185 28.729 5.206  1.044  -0.478 C25 TKD 12 
TKD C24 C24 C 0 1 N N N 12.578 -3.086 28.657 3.915  1.615  -0.894 C24 TKD 13 
TKD C23 C23 C 0 1 N N N 13.301 -2.164 28.593 2.885  2.071  -1.226 C23 TKD 14 
TKD C22 C22 C 0 1 N N N 14.156 -0.999 28.513 1.594  2.642  -1.642 C22 TKD 15 
TKD C20 C20 C 0 1 N N R 13.414 0.307  28.128 0.551  2.394  -0.550 C20 TKD 16 
TKD C17 C17 C 0 1 N N R 14.372 1.410  27.519 -0.818 2.876  -1.034 C17 TKD 17 
TKD C21 C21 C 0 1 N N N 12.702 0.754  29.423 0.944  3.161  0.714  C21 TKD 18 
TKD O03 O03 O 0 1 N N N 11.214 -4.290 30.083 5.632  1.664  0.737  O03 TKD 19 
TKD C13 C13 C 0 1 N N R 13.774 2.706  26.881 -1.877 2.606  0.024  C13 TKD 20 
TKD C14 C14 C 0 1 N N S 15.085 3.268  26.218 -3.165 2.367  -0.815 C14 TKD 21 
TKD C15 C15 C 0 1 N N N 15.671 2.059  25.484 -2.641 1.427  -1.903 C15 TKD 22 
TKD C16 C16 C 0 1 N N N 15.317 0.880  26.390 -1.269 2.062  -2.275 C16 TKD 23 
TKD C12 C12 C 0 1 N N N 13.293 3.779  27.914 -2.181 3.693  1.028  C12 TKD 24 
TKD C11 C11 C 0 1 N N N 13.059 5.176  27.279 -3.194 3.124  2.036  C11 TKD 25 
TKD C09 C09 C 0 1 N N N 14.241 5.642  26.395 -4.480 2.667  1.351  C09 TKD 26 
TKD C08 C08 C 0 1 N N N 14.719 4.549  25.431 -4.171 1.807  0.146  C08 TKD 27 
TKD C18 C18 C 0 1 N N N 12.624 2.360  25.836 -1.531 1.314  0.767  C18 TKD 28 
TKD C07 C07 C 0 1 N N N 14.854 4.640  24.100 -4.751 0.626  -0.039 C07 TKD 29 
TKD C06 C06 C 0 1 N N N 14.586 5.789  23.247 -5.652 0.080  0.988  C06 TKD 30 
TKD C05 C05 C 0 1 N N N 14.365 5.734  21.919 -6.162 -1.139 0.845  C05 TKD 31 
TKD C04 C04 C 0 1 N N N 14.149 7.031  21.151 -7.203 -1.655 1.812  C04 TKD 32 
TKD C03 C03 C 0 1 N N R 14.791 7.036  19.737 -8.437 -2.094 1.013  C03 TKD 33 
TKD C02 C02 C 0 1 N N N 14.392 5.789  18.962 -7.985 -2.989 -0.119 C02 TKD 34 
TKD C01 C01 C 0 1 N N R 14.901 4.531  19.631 -6.944 -2.472 -1.085 C01 TKD 35 
TKD C10 C10 C 0 1 N N N 14.346 4.444  21.071 -5.714 -2.031 -0.290 C10 TKD 36 
TKD C28 C28 C 0 1 N N N 13.631 5.765  17.847 -8.486 -4.192 -0.258 C28 TKD 37 
TKD O01 O01 O 0 1 N N N 14.495 3.399  18.880 -6.580 -3.510 -1.998 O01 TKD 38 
TKD O02 O02 O 0 1 N N N 16.211 7.035  19.866 -9.098 -0.945 0.481  O02 TKD 39 
TKD H1  H1  H 0 1 N N N 8.359  -3.962 29.608 7.143  0.618  1.117  H1  TKD 40 
TKD H2  H2  H 0 1 N N N 9.506  -2.704 30.182 6.380  -0.641 2.117  H2  TKD 41 
TKD H3  H3  H 0 1 N N N 7.114  -2.009 30.593 8.841  -0.631 2.423  H3  TKD 42 
TKD H4  H4  H 0 1 N N N 8.852  -0.239 30.114 9.230  -3.029 1.924  H4  TKD 43 
TKD H5  H5  H 0 1 N N N 7.248  0.250  29.470 7.599  -2.770 2.589  H5  TKD 44 
TKD H6  H6  H 0 1 N N N 9.075  0.682  27.785 7.531  -4.287 0.628  H6  TKD 45 
TKD H7  H7  H 0 1 N N N 10.291 -1.275 26.775 5.615  -2.776 1.069  H7  TKD 46 
TKD H8  H8  H 0 1 N N N 10.634 -1.145 28.533 5.833  -3.038 -0.678 H8  TKD 47 
TKD H9  H9  H 0 1 N N N 7.833  -4.143 27.067 6.904  -1.270 -2.082 H9  TKD 48 
TKD H10 H10 H 0 1 N N N 8.644  -3.027 25.916 7.449  0.251  -1.335 H10 TKD 49 
TKD H11 H11 H 0 1 N N N 5.592  -1.567 28.637 9.432  0.256  0.184  H11 TKD 50 
TKD H12 H12 H 0 1 N N N 6.089  -3.293 28.659 10.300 -1.261 0.520  H12 TKD 51 
TKD H13 H13 H 0 1 N N N 8.023  -0.560 25.863 9.535  -3.396 -0.528 H13 TKD 52 
TKD H14 H14 H 0 1 N N N 6.767  0.076  26.979 8.122  -3.400 -1.611 H14 TKD 53 
TKD H15 H15 H 0 1 N N N 6.265  -2.317 26.331 9.365  -1.261 -1.777 H15 TKD 54 
TKD H16 H16 H 0 1 N N N 9.964  -4.872 27.572 4.610  -0.916 -1.142 H16 TKD 55 
TKD H17 H17 H 0 1 N N N 10.959 -3.608 26.771 4.400  -0.636 0.603  H17 TKD 56 
TKD H18 H18 H 0 1 N N N 12.148 -5.115 28.424 5.949  1.221  -1.256 H18 TKD 57 
TKD H19 H19 H 0 1 N N N 14.932 -1.191 27.757 1.705  3.715  -1.801 H19 TKD 58 
TKD H20 H20 H 0 1 N N N 14.630 -0.850 29.495 1.269  2.169  -2.569 H20 TKD 59 
TKD H21 H21 H 0 1 N N N 12.650 0.065  27.375 0.503  1.328  -0.329 H21 TKD 60 
TKD H22 H22 H 0 1 N N N 15.024 1.740  28.341 -0.783 3.939  -1.271 H22 TKD 61 
TKD H23 H23 H 0 1 N N N 12.057 -0.059 29.787 0.201  2.984  1.492  H23 TKD 62 
TKD H24 H24 H 0 1 N N N 13.453 0.996  30.189 1.919  2.817  1.059  H24 TKD 63 
TKD H25 H25 H 0 1 N N N 12.089 1.644  29.216 0.992  4.227  0.493  H25 TKD 64 
TKD H26 H26 H 0 1 N N N 11.963 -4.456 30.643 5.017  1.548  1.474  H26 TKD 65 
TKD H27 H27 H 0 1 N N N 15.776 3.549  27.026 -3.524 3.299  -1.250 H27 TKD 66 
TKD H28 H28 H 0 1 N N N 15.212 1.942  24.491 -2.509 0.419  -1.512 H28 TKD 67 
TKD H29 H29 H 0 1 N N N 16.761 2.157  25.375 -3.310 1.423  -2.764 H29 TKD 68 
TKD H30 H30 H 0 1 N N N 14.803 0.101  25.807 -1.381 2.720  -3.136 H30 TKD 69 
TKD H31 H31 H 0 1 N N N 16.232 0.462  26.834 -0.542 1.279  -2.493 H31 TKD 70 
TKD H32 H32 H 0 1 N N N 12.349 3.435  28.361 -1.268 3.985  1.546  H32 TKD 71 
TKD H33 H33 H 0 1 N N N 14.057 3.875  28.700 -2.610 4.557  0.520  H33 TKD 72 
TKD H34 H34 H 0 1 N N N 12.915 5.909  28.087 -2.744 2.274  2.549  H34 TKD 73 
TKD H35 H35 H 0 1 N N N 12.152 5.132  26.658 -3.436 3.893  2.769  H35 TKD 74 
TKD H36 H36 H 0 1 N N N 15.079 5.928  27.048 -5.081 2.097  2.059  H36 TKD 75 
TKD H37 H37 H 0 1 N N N 13.920 6.515  25.808 -5.043 3.542  1.025  H37 TKD 76 
TKD H38 H38 H 0 1 N N N 11.744 1.975  26.372 -0.653 1.479  1.392  H38 TKD 77 
TKD H39 H39 H 0 1 N N N 12.346 3.269  25.282 -2.373 1.019  1.394  H39 TKD 78 
TKD H40 H40 H 0 1 N N N 12.987 1.597  25.131 -1.321 0.525  0.045  H40 TKD 79 
TKD H41 H41 H 0 1 N N N 15.205 3.750  23.598 -4.561 0.066  -0.943 H41 TKD 80 
TKD H42 H42 H 0 1 N N N 14.562 6.762  23.715 -5.900 0.671  1.858  H42 TKD 81 
TKD H43 H43 H 0 1 N N N 14.586 7.856  21.733 -6.801 -2.506 2.362  H43 TKD 82 
TKD H44 H44 H 0 1 N N N 13.067 7.193  21.041 -7.478 -0.865 2.510  H44 TKD 83 
TKD H45 H45 H 0 1 N N N 14.450 7.929  19.193 -9.119 -2.640 1.664  H45 TKD 84 
TKD H46 H46 H 0 1 N N N 15.999 4.576  19.684 -7.346 -1.621 -1.635 H46 TKD 85 
TKD H47 H47 H 0 1 N N N 13.300 4.110  21.002 -5.034 -1.483 -0.942 H47 TKD 86 
TKD H48 H48 H 0 1 N N N 14.938 3.688  21.608 -5.208 -2.906 0.117  H48 TKD 87 
TKD H49 H49 H 0 1 N N N 13.250 6.687  17.433 -8.155 -4.823 -1.069 H49 TKD 88 
TKD H50 H50 H 0 1 N N N 13.403 4.824  17.369 -9.229 -4.551 0.438  H50 TKD 89 
TKD H51 H51 H 0 1 N N N 14.814 2.609  19.300 -7.317 -3.844 -2.527 H51 TKD 90 
TKD H52 H52 H 0 1 N N N 16.486 7.806  20.348 -9.889 -1.150 -0.036 H52 TKD 91 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TKD C28 C02 DOUB N N 1  
TKD O01 C01 SING N N 2  
TKD C02 C01 SING N N 3  
TKD C02 C03 SING N N 4  
TKD C01 C10 SING N N 5  
TKD C03 O02 SING N N 6  
TKD C03 C04 SING N N 7  
TKD C10 C05 SING N N 8  
TKD C04 C05 SING N N 9  
TKD C05 C06 DOUB N N 10 
TKD C06 C07 SING N N 11 
TKD C07 C08 DOUB N E 12 
TKD C08 C14 SING N N 13 
TKD C08 C09 SING N N 14 
TKD C15 C14 SING N N 15 
TKD C15 C16 SING N N 16 
TKD C18 C13 SING N N 17 
TKD C14 C13 SING N N 18 
TKD C16 C17 SING N N 19 
TKD C09 C11 SING N N 20 
TKD C38 C35 SING N N 21 
TKD C38 C33 SING N N 22 
TKD C13 C17 SING N N 23 
TKD C13 C12 SING N N 24 
TKD C37 C35 SING N N 25 
TKD C37 C29 SING N N 26 
TKD C35 C36 SING N N 27 
TKD C11 C12 SING N N 28 
TKD C17 C20 SING N N 29 
TKD C26 C29 SING N N 30 
TKD C26 C25 SING N N 31 
TKD C34 C33 SING N N 32 
TKD C34 C29 SING N N 33 
TKD C33 C32 SING N N 34 
TKD C29 C30 SING N N 35 
TKD C20 C22 SING N N 36 
TKD C20 C21 SING N N 37 
TKD C22 C23 SING N N 38 
TKD C36 C31 SING N N 39 
TKD C23 C24 TRIP N N 40 
TKD C24 C25 SING N N 41 
TKD C25 O03 SING N N 42 
TKD C32 C31 SING N N 43 
TKD C30 C31 SING N N 44 
TKD C30 H1  SING N N 45 
TKD C30 H2  SING N N 46 
TKD C31 H3  SING N N 47 
TKD C32 H4  SING N N 48 
TKD C32 H5  SING N N 49 
TKD C33 H6  SING N N 50 
TKD C34 H7  SING N N 51 
TKD C34 H8  SING N N 52 
TKD C37 H9  SING N N 53 
TKD C37 H10 SING N N 54 
TKD C36 H11 SING N N 55 
TKD C36 H12 SING N N 56 
TKD C38 H13 SING N N 57 
TKD C38 H14 SING N N 58 
TKD C35 H15 SING N N 59 
TKD C26 H16 SING N N 60 
TKD C26 H17 SING N N 61 
TKD C25 H18 SING N N 62 
TKD C22 H19 SING N N 63 
TKD C22 H20 SING N N 64 
TKD C20 H21 SING N N 65 
TKD C17 H22 SING N N 66 
TKD C21 H23 SING N N 67 
TKD C21 H24 SING N N 68 
TKD C21 H25 SING N N 69 
TKD O03 H26 SING N N 70 
TKD C14 H27 SING N N 71 
TKD C15 H28 SING N N 72 
TKD C15 H29 SING N N 73 
TKD C16 H30 SING N N 74 
TKD C16 H31 SING N N 75 
TKD C12 H32 SING N N 76 
TKD C12 H33 SING N N 77 
TKD C11 H34 SING N N 78 
TKD C11 H35 SING N N 79 
TKD C09 H36 SING N N 80 
TKD C09 H37 SING N N 81 
TKD C18 H38 SING N N 82 
TKD C18 H39 SING N N 83 
TKD C18 H40 SING N N 84 
TKD C07 H41 SING N N 85 
TKD C06 H42 SING N N 86 
TKD C04 H43 SING N N 87 
TKD C04 H44 SING N N 88 
TKD C03 H45 SING N N 89 
TKD C01 H46 SING N N 90 
TKD C10 H47 SING N N 91 
TKD C10 H48 SING N N 92 
TKD C28 H49 SING N N 93 
TKD C28 H50 SING N N 94 
TKD O01 H51 SING N N 95 
TKD O02 H52 SING N N 96 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TKD SMILES           ACDLabs              12.01 "OC6C(=C)\C(O)C/C(=C\C=C4/CCCC5(C)C(C(C)CC#CC(O)CC13CC2CC(C1)CC(C2)C3)CCC45)C6" 
TKD InChI            InChI                1.03  
"InChI=1S/C36H52O3/c1-23(6-4-8-30(37)22-36-19-26-14-27(20-36)16-28(15-26)21-36)31-11-12-32-29(7-5-13-35(31,32)3)10-9-25-17-33(38)24(2)34(39)18-25/h9-10,23,26-28,30-34,37-39H,2,5-7,11-22H2,1,3H3/b29-10+/t23-,26-,27+,28-,30-,31-,32+,33-,34-,35-,36-/m1/s1" 
TKD InChIKey         InChI                1.03  UFJLHOSCLNTAFF-OLECLGHFSA-N 
TKD SMILES_CANONICAL CACTVS               3.370 "C[C@H](CC#C[C@@H](O)CC12CC3CC(CC(C3)C1)C2)[C@H]4CC[C@H]5/C(CCC[C@]45C)=C/C=C6C[C@@H](O)C(=C)[C@H](O)C6" 
TKD SMILES           CACTVS               3.370 "C[CH](CC#C[CH](O)CC12CC3CC(CC(C3)C1)C2)[CH]4CC[CH]5C(CCC[C]45C)=CC=C6C[CH](O)C(=C)[CH](O)C6" 
TKD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](CC#C[C@H](CC12CC3CC(C1)CC(C3)C2)O)[C@H]4CC[C@@H]\5[C@@]4(CCC/C5=C\C=C6C[C@H](C(=C)[C@@H](C6)O)O)C" 
TKD SMILES           "OpenEye OEToolkits" 1.7.6 "CC(CC#CC(CC12CC3CC(C1)CC(C3)C2)O)C4CCC5C4(CCCC5=CC=C6CC(C(=C)C(C6)O)O)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
TKD "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,3R,7E,17beta)-17-{(2R,6S)-6-hydroxy-7-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hept-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol"                                     
TKD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,6S)-7-(1-adamantyl)-6-oxidanyl-hept-4-yn-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TKD "Create component" 2012-06-07 PDBJ 
TKD "Initial release"  2013-06-12 RCSB 
# 
