data_SVD
#

_chem_comp.id                                   SVD
_chem_comp.name                                 "(5~{R})-5-~{tert}-butyl-2-methyl-1-oxidanyl-pyrazolidin-3-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H16 N2 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-11
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       172.225
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SVD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5RA3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SVD  N1   N1   N  0  1  N  N  N  36.453  129.014  21.182  -0.394  -1.092   0.098  N1   SVD   1  
SVD  C4   C1   C  0  1  N  N  R  35.111  128.197  21.133   0.667  -0.309   0.773  C4   SVD   2  
SVD  C5   C2   C  0  1  N  N  N  35.518  126.999  22.011  -0.116   0.932   1.265  C5   SVD   3  
SVD  C6   C3   C  0  1  N  N  N  36.334  127.640  23.094  -1.293   0.969   0.307  C6   SVD   4  
SVD  C7   C4   C  0  1  N  N  N  37.589  129.758  23.379  -2.347  -0.541  -1.349  C7   SVD   5  
SVD  N    N2   N  0  1  N  N  N  36.814  128.799  22.591  -1.354  -0.219  -0.322  N    SVD   6  
SVD  C    C5   C  0  1  N  N  N  33.873  126.446  19.770   1.152   0.916  -1.349  C    SVD   7  
SVD  O    O1   O  0  1  N  N  N  36.508  127.243  24.234  -2.046   1.905   0.138  O    SVD   8  
SVD  C1   C6   C  0  1  N  N  N  34.507  127.844  19.746   1.764   0.092  -0.215  C1   SVD   9  
SVD  C2   C7   C  0  1  N  N  N  33.411  128.882  19.476   2.822   0.928   0.508  C2   SVD  10  
SVD  C3   C8   C  0  1  N  N  N  35.521  127.896  18.594   2.415  -1.166  -0.793  C3   SVD  11  
SVD  O1   O2   O  0  1  N  N  N  36.329  130.314  20.868  -0.957  -2.098   0.998  O1   SVD  12  
SVD  H1   H1   H  0  1  N  N  N  34.356  128.775  21.686   1.086  -0.864   1.613  H1   SVD  13  
SVD  H2   H2   H  0  1  N  N  N  34.633  126.495  22.428  -0.456   0.795   2.291  H2   SVD  14  
SVD  H3   H3   H  0  1  N  N  N  36.117  126.275  21.440   0.488   1.834   1.172  H3   SVD  15  
SVD  H4   H4   H  0  1  N  N  N  37.726  129.369  24.399  -3.230  -0.973  -0.878  H4   SVD  16  
SVD  H5   H5   H  0  1  N  N  N  38.572  129.909  22.909  -2.627   0.368  -1.882  H5   SVD  17  
SVD  H6   H6   H  0  1  N  N  N  37.051  130.717  23.422  -1.923  -1.259  -2.052  H6   SVD  18  
SVD  H7   H7   H  0  1  N  N  N  33.142  126.388  20.590   0.688   1.813  -0.938  H7   SVD  19  
SVD  H8   H8   H  0  1  N  N  N  33.365  126.257  18.813   1.933   1.202  -2.054  H8   SVD  20  
SVD  H9   H9   H  0  1  N  N  N  34.657  125.690  19.924   0.398   0.321  -1.865  H9   SVD  21  
SVD  H10  H10  H  0  1  N  N  N  32.674  128.859  20.293   2.358   1.824   0.920  H10  SVD  22  
SVD  H11  H11  H  0  1  N  N  N  33.861  129.884  19.417   3.258   0.340   1.317  H11  SVD  23  
SVD  H12  H12  H  0  1  N  N  N  32.911  128.648  18.525   3.603   1.214  -0.196  H12  SVD  24  
SVD  H13  H13  H  0  1  N  N  N  36.316  127.157  18.771   3.197  -0.880  -1.497  H13  SVD  25  
SVD  H14  H14  H  0  1  N  N  N  35.011  127.667  17.647   2.852  -1.753   0.015  H14  SVD  26  
SVD  H15  H15  H  0  1  N  N  N  35.962  128.902  18.539   1.662  -1.761  -1.309  H15  SVD  27  
SVD  H16  H16  H  0  1  N  N  N  37.179  130.735  20.921  -1.658  -2.633   0.601  H16  SVD  28  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SVD  C3  C1   SING  N  N   1  
SVD  C2  C1   SING  N  N   2  
SVD  C1  C    SING  N  N   3  
SVD  C1  C4   SING  N  N   4  
SVD  O1  N1   SING  N  N   5  
SVD  C4  N1   SING  N  N   6  
SVD  C4  C5   SING  N  N   7  
SVD  N1  N    SING  N  N   8  
SVD  C5  C6   SING  N  N   9  
SVD  N   C6   SING  N  N  10  
SVD  N   C7   SING  N  N  11  
SVD  C6  O    DOUB  N  N  12  
SVD  C4  H1   SING  N  N  13  
SVD  C5  H2   SING  N  N  14  
SVD  C5  H3   SING  N  N  15  
SVD  C7  H4   SING  N  N  16  
SVD  C7  H5   SING  N  N  17  
SVD  C7  H6   SING  N  N  18  
SVD  C   H7   SING  N  N  19  
SVD  C   H8   SING  N  N  20  
SVD  C   H9   SING  N  N  21  
SVD  C2  H10  SING  N  N  22  
SVD  C2  H11  SING  N  N  23  
SVD  C2  H12  SING  N  N  24  
SVD  C3  H13  SING  N  N  25  
SVD  C3  H14  SING  N  N  26  
SVD  C3  H15  SING  N  N  27  
SVD  O1  H16  SING  N  N  28  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SVD  InChI             InChI                 1.03   "InChI=1S/C8H16N2O2/c1-8(2,3)6-5-7(11)9(4)10(6)12/h6,12H,5H2,1-4H3/t6-/m1/s1"  
SVD  InChIKey          InChI                 1.03   WSOJYUWEGFKKBH-ZCFIWIBFSA-N  
SVD  SMILES_CANONICAL  CACTVS                3.385  "CN1N(O)[C@H](CC1=O)C(C)(C)C"  
SVD  SMILES            CACTVS                3.385  "CN1N(O)[CH](CC1=O)C(C)(C)C"  
SVD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(C)(C)[C@H]1CC(=O)N(N1O)C"  
SVD  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)(C)C1CC(=O)N(N1O)C"  
#
_pdbx_chem_comp_identifier.comp_id          SVD
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(5~{R})-5-~{tert}-butyl-2-methyl-1-oxidanyl-pyrazolidin-3-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SVD  "Create component"  2020-03-11  RCSB  
SVD  "Initial release"   2020-07-22  RCSB  
##
