data_STD
#

_chem_comp.id                                   STD
_chem_comp.name                                 STREPTOLYDIGIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C32 H44 N2 O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-PYRROLIDINEACETAMIDE; PORTAMYCIN"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-08-01
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       600.700
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    STD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2A6H
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
STD  C1    C1    C  0  1  N  N  N  142.093  116.230  64.085  -2.402   0.668  -1.257  C1    STD   1  
STD  C2    C2    C  0  1  N  N  N  140.843  115.687  64.473  -2.965  -0.397  -0.427  C2    STD   2  
STD  N1    N1    N  0  1  N  N  N  140.648  115.357  65.823  -4.293  -0.244  -0.299  N1    STD   3  
STD  C3    C3    C  0  1  N  N  N  142.870  116.091  65.260  -3.454   1.523  -1.661  C3    STD   4  
STD  C4    C4    C  0  1  N  N  S  139.334  115.083  66.482  -5.182  -1.125   0.462  C4    STD   5  
STD  O1    O1    O  0  1  N  N  N  144.040  116.438  65.428  -3.366   2.514  -2.358  O1    STD   6  
STD  O2    O2    O  0  1  N  N  N  139.926  115.507  63.691  -2.320  -1.296   0.078  O2    STD   7  
STD  C5    C5    C  0  1  N  N  N  142.613  116.799  62.881  -1.049   0.816  -1.597  C5    STD   8  
STD  C6    C6    C  0  1  N  N  N  141.921  116.911  61.716  -0.099  -0.111  -1.126  C6    STD   9  
STD  C7    C7    C  0  1  N  N  N  141.599  118.041  61.076   1.223   0.094  -1.358  C7    STD  10  
STD  C8    C8    C  0  1  N  N  N  140.935  118.111  59.911   2.169  -0.899  -0.996  C8    STD  11  
STD  C9    C9    C  0  1  N  N  N  141.686  118.547  58.822   3.470  -0.698  -1.225  C9    STD  12  
STD  C10   C10   C  0  1  N  N  R  141.305  118.758  57.370   4.489  -1.665  -0.680  C10   STD  13  
STD  C11   C11   C  0  1  N  N  N  139.451  117.692  59.814   1.706  -2.182  -0.355  C11   STD  14  
STD  O3    O3    O  0  1  N  N  N  143.912  117.273  62.890  -0.657   1.848  -2.374  O3    STD  15  
STD  O4    O4    O  0  1  N  N  N  139.529  114.138  67.610  -6.526  -0.664   0.339  O4    STD  16  
STD  C12   C12   C  0  1  N  N  N  138.661  116.441  66.991  -5.073  -2.551  -0.084  C12   STD  17  
STD  C13   C13   C  0  1  N  N  R  140.952  117.439  56.621   5.574  -0.893   0.073  C13   STD  18  
STD  C14   C14   C  0  1  N  N  N  142.460  119.582  56.680   5.124  -2.441  -1.836  C14   STD  19  
STD  C15   C15   C  0  1  N  N  N  137.639  116.322  67.635  -5.980  -3.472   0.740  C15   STD  20  
STD  C16   C16   C  0  1  N  N  S  142.103  116.634  55.719   4.953  -0.181   1.282  C16   STD  21  
STD  O5    O5    O  0  1  N  N  N  139.658  117.813  55.739   6.153   0.083  -0.792  O5    STD  22  
STD  C17   C17   C  0  1  N  N  R  141.556  115.960  54.760   6.077   0.611   1.969  C17   STD  23  
STD  C18   C18   C  0  1  N  N  N  142.848  115.968  56.478   4.388  -1.225   2.248  C18   STD  24  
STD  C19   C19   C  0  1  N  N  R  139.334  117.199  54.779   7.136   0.807  -0.082  C19   STD  25  
STD  C20   C20   C  0  1  N  N  S  142.009  115.353  66.370  -4.710   0.949  -1.045  C20   STD  26  
STD  C21   C21   C  0  1  N  N  S  142.624  113.829  66.703  -5.344   1.967  -0.095  C21   STD  27  
STD  C22   C22   C  0  1  N  N  N  142.924  112.913  65.395  -4.339   2.371   0.952  C22   STD  28  
STD  C23   C23   C  0  1  N  N  N  143.636  113.866  67.372  -5.779   3.202  -0.888  C23   STD  29  
STD  N2    N2    N  0  1  N  N  N  143.842  113.390  64.412  -4.678   3.266   1.902  N2    STD  30  
STD  O6    O6    O  0  1  N  N  N  142.329  111.863  65.262  -3.225   1.892   0.941  O6    STD  31  
STD  C24   C24   C  0  1  N  N  N  145.189  112.870  64.300  -3.700   3.659   2.920  C24   STD  32  
STD  C25   C25   C  0  1  N  N  S  138.340  113.943  68.508  -7.329  -1.432   1.233  C25   STD  33  
STD  C26   C26   C  0  1  N  N  S  137.737  115.377  68.950  -7.396  -2.883   0.751  C26   STD  34  
STD  O7    O7    O  0  1  N  N  N  138.586  116.068  69.933  -7.941  -2.926  -0.569  O7    STD  35  
STD  C27   C27   C  0  1  N  N  N  138.791  113.059  69.719  -8.742  -0.846   1.278  C27   STD  36  
STD  O8    O8    O  0  1  N  N  N  140.585  116.828  53.976   6.619   1.529   1.026  O8    STD  37  
STD  C28   C28   C  0  1  N  N  R  138.517  115.847  55.146   8.295  -0.071   0.376  C28   STD  38  
STD  C29   C29   C  0  1  N  N  N  138.527  118.147  53.854   7.718   1.838  -1.051  C29   STD  39  
STD  C30   C30   C  0  1  N  N  N  140.723  114.592  55.114   7.122  -0.348   2.467  C30   STD  40  
STD  C31   C31   C  0  1  N  N  N  137.278  115.950  56.013   9.031  -0.877  -0.693  C31   STD  41  
STD  C32   C32   C  0  1  N  N  N  139.334  114.573  55.284   8.149  -0.684   1.729  C32   STD  42  
STD  O9    O9    O  0  1  N  N  N  137.143  115.623  54.527   9.607   0.271  -0.065  O9    STD  43  
STD  H4    H4    H  0  1  N  N  N  138.645  114.620  65.737  -4.890  -1.116   1.512  H4    STD  44  
STD  H6    H6    H  0  1  N  N  N  141.582  115.978  61.234  -0.423  -0.985  -0.580  H6    STD  45  
STD  H7    H7    H  0  1  N  N  N  141.905  118.990  61.546   1.555   1.013  -1.818  H7    STD  46  
STD  H9    H9    H  0  1  N  N  N  142.718  118.752  59.152   3.791   0.158  -1.800  H9    STD  47  
STD  H10   H10   H  0  1  N  N  N  140.355  119.340  57.320   4.001  -2.363   0.001  H10   STD  48  
STD  H111  1H11  H  0  0  N  N  N  138.899  117.750  58.846   2.568  -2.817  -0.150  H111  STD  49  
STD  H112  2H11  H  0  0  N  N  N  139.359  116.651  60.202   1.191  -1.956   0.579  H112  STD  50  
STD  H113  3H11  H  0  0  N  N  N  138.877  118.271  60.574   1.024  -2.700  -1.029  H113  STD  51  
STD  HO3   HO3   H  0  1  N  N  N  144.257  117.651  62.089   0.309   1.811  -2.422  HO3   STD  52  
STD  H121  1H12  H  0  0  N  N  N  139.404  117.037  67.569  -5.388  -2.568  -1.127  H121  STD  53  
STD  H122  2H12  H  0  0  N  N  N  138.485  117.122  66.126  -4.041  -2.893  -0.007  H122  STD  54  
STD  H13   H13   H  0  1  N  N  N  140.806  116.664  57.409   6.345  -1.584   0.412  H13   STD  55  
STD  H141  1H14  H  0  0  N  N  N  142.179  119.737  55.612   5.798  -3.200  -1.437  H141  STD  56  
STD  H142  2H14  H  0  0  N  N  N  142.685  120.536  57.210   4.342  -2.922  -2.424  H142  STD  57  
STD  H143  3H14  H  0  0  N  N  N  143.461  119.105  56.799   5.685  -1.754  -2.470  H143  STD  58  
STD  H151  1H15  H  0  0  N  N  N  137.250  117.327  67.918  -6.000  -4.464   0.290  H151  STD  59  
STD  H152  2H15  H  0  0  N  N  N  136.813  115.968  66.974  -5.604  -3.538   1.761  H152  STD  60  
STD  H16   H16   H  0  1  N  N  N  142.767  117.364  55.201   4.161   0.498   0.968  H16   STD  61  
STD  H17   H17   H  0  1  N  N  N  142.466  115.635  54.204   5.658   1.161   2.811  H17   STD  62  
STD  H181  1H18  H  0  0  N  N  N  143.616  115.430  55.875   4.084  -0.736   3.173  H181  STD  63  
STD  H182  2H18  H  0  0  N  N  N  143.305  116.598  57.275   3.525  -1.711   1.793  H182  STD  64  
STD  H183  3H18  H  0  0  N  N  N  142.268  115.275  57.132   5.153  -1.971   2.464  H183  STD  65  
STD  H20   H20   H  0  1  N  N  N  142.030  115.855  67.365  -5.419   0.673  -1.826  H20   STD  66  
STD  H21   H21   H  0  1  N  N  N  141.796  113.351  67.277  -6.213   1.522   0.388  H21   STD  67  
STD  H231  1H23  H  0  0  N  N  N  144.044  112.852  67.593  -6.327   3.879  -0.234  H231  STD  68  
STD  H232  2H23  H  0  0  N  N  N  144.408  114.512  66.892  -4.898   3.709  -1.282  H232  STD  69  
STD  H233  3H23  H  0  0  N  N  N  143.473  114.444  68.311  -6.421   2.895  -1.714  H233  STD  70  
STD  HN2   HN2   H  0  1  N  N  N  143.527  114.120  63.773  -5.568   3.649   1.911  HN2   STD  71  
STD  H241  1H24  H  0  0  N  N  N  145.906  113.242  63.532  -3.391   2.779   3.485  H241  STD  72  
STD  H242  2H24  H  0  0  N  N  N  145.676  112.973  65.297  -2.831   4.104   2.436  H242  STD  73  
STD  H243  3H24  H  0  0  N  N  N  145.117  111.763  64.187  -4.152   4.385   3.596  H243  STD  74  
STD  H25   H25   H  0  1  N  N  N  137.512  113.413  67.981  -6.892  -1.402   2.231  H25   STD  75  
STD  H26   H26   H  0  1  N  N  N  136.740  115.191  69.415  -8.027  -3.463   1.425  H26   STD  76  
STD  HO7   HO7   H  0  1  N  N  N  138.643  115.514  70.703  -7.959  -3.856  -0.834  HO7   STD  77  
STD  H271  1H27  H  0  0  N  N  N  137.908  112.914  70.385  -9.356  -1.429   1.965  H271  STD  78  
STD  H272  2H27  H  0  0  N  N  N  139.255  112.096  69.401  -8.695   0.187   1.622  H272  STD  79  
STD  H273  3H27  H  0  0  N  N  N  139.673  113.479  70.255  -9.180  -0.878   0.281  H273  STD  80  
STD  H291  1H29  H  0  0  N  N  N  138.222  117.569  52.950   6.924   2.501  -1.395  H291  STD  81  
STD  H292  2H29  H  0  0  N  N  N  137.663  118.623  54.373   8.485   2.422  -0.543  H292  STD  82  
STD  H293  3H29  H  0  0  N  N  N  139.082  119.080  53.602   8.158   1.325  -1.906  H293  STD  83  
STD  H30   H30   H  0  1  N  N  N  141.140  113.580  55.252   7.023  -0.769   3.457  H30   STD  84  
STD  H311  1H31  H  0  0  N  N  N  136.936  115.469  56.959   9.418  -1.857  -0.414  H311  STD  85  
STD  H312  2H31  H  0  0  N  N  N  136.852  116.726  56.690   8.696  -0.776  -1.726  H312  STD  86  
STD  H32   H32   H  0  1  N  N  N  138.898  113.587  55.518   8.880  -1.389   2.096  H32   STD  87  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
STD  C1   C2    SING  N  N   1  
STD  C1   C3    SING  N  N   2  
STD  C1   C5    DOUB  N  E   3  
STD  C2   N1    SING  N  N   4  
STD  C2   O2    DOUB  N  N   5  
STD  N1   C4    SING  N  N   6  
STD  N1   C20   SING  N  N   7  
STD  C3   O1    DOUB  N  N   8  
STD  C3   C20   SING  N  N   9  
STD  C4   O4    SING  N  N  10  
STD  C4   C12   SING  N  N  11  
STD  C4   H4    SING  N  N  12  
STD  C5   C6    SING  N  N  13  
STD  C5   O3    SING  N  N  14  
STD  C6   C7    DOUB  N  E  15  
STD  C6   H6    SING  N  N  16  
STD  C7   C8    SING  N  N  17  
STD  C7   H7    SING  N  N  18  
STD  C8   C9    DOUB  N  E  19  
STD  C8   C11   SING  N  N  20  
STD  C9   C10   SING  N  N  21  
STD  C9   H9    SING  N  N  22  
STD  C10  C13   SING  N  N  23  
STD  C10  C14   SING  N  N  24  
STD  C10  H10   SING  N  N  25  
STD  C11  H111  SING  N  N  26  
STD  C11  H112  SING  N  N  27  
STD  C11  H113  SING  N  N  28  
STD  O3   HO3   SING  N  N  29  
STD  O4   C25   SING  N  N  30  
STD  C12  C15   SING  N  N  31  
STD  C12  H121  SING  N  N  32  
STD  C12  H122  SING  N  N  33  
STD  C13  C16   SING  N  N  34  
STD  C13  O5    SING  N  N  35  
STD  C13  H13   SING  N  N  36  
STD  C14  H141  SING  N  N  37  
STD  C14  H142  SING  N  N  38  
STD  C14  H143  SING  N  N  39  
STD  C15  C26   SING  N  N  40  
STD  C15  H151  SING  N  N  41  
STD  C15  H152  SING  N  N  42  
STD  C16  C17   SING  N  N  43  
STD  C16  C18   SING  N  N  44  
STD  C16  H16   SING  N  N  45  
STD  O5   C19   SING  N  N  46  
STD  C17  O8    SING  N  N  47  
STD  C17  C30   SING  N  N  48  
STD  C17  H17   SING  N  N  49  
STD  C18  H181  SING  N  N  50  
STD  C18  H182  SING  N  N  51  
STD  C18  H183  SING  N  N  52  
STD  C19  O8    SING  N  N  53  
STD  C19  C28   SING  N  N  54  
STD  C19  C29   SING  N  N  55  
STD  C20  C21   SING  N  N  56  
STD  C20  H20   SING  N  N  57  
STD  C21  C22   SING  N  N  58  
STD  C21  C23   SING  N  N  59  
STD  C21  H21   SING  N  N  60  
STD  C22  N2    SING  N  N  61  
STD  C22  O6    DOUB  N  N  62  
STD  C23  H231  SING  N  N  63  
STD  C23  H232  SING  N  N  64  
STD  C23  H233  SING  N  N  65  
STD  N2   C24   SING  N  N  66  
STD  N2   HN2   SING  N  N  67  
STD  C24  H241  SING  N  N  68  
STD  C24  H242  SING  N  N  69  
STD  C24  H243  SING  N  N  70  
STD  C25  C26   SING  N  N  71  
STD  C25  C27   SING  N  N  72  
STD  C25  H25   SING  N  N  73  
STD  C26  O7    SING  N  N  74  
STD  C26  H26   SING  N  N  75  
STD  O7   HO7   SING  N  N  76  
STD  C27  H271  SING  N  N  77  
STD  C27  H272  SING  N  N  78  
STD  C27  H273  SING  N  N  79  
STD  C28  C31   SING  N  N  80  
STD  C28  C32   SING  N  N  81  
STD  C28  O9    SING  N  N  82  
STD  C29  H291  SING  N  N  83  
STD  C29  H292  SING  N  N  84  
STD  C29  H293  SING  N  N  85  
STD  C30  C32   DOUB  N  N  86  
STD  C30  H30   SING  N  N  87  
STD  C31  O9    SING  N  N  88  
STD  C31  H311  SING  N  N  89  
STD  C31  H312  SING  N  N  90  
STD  C32  H32   SING  N  N  91  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
STD  SMILES            ACDLabs               10.04  "O=C(NC)C(C)C2C(=O)/C(C(=O)N2C1OC(C)C(O)CC1)=C(\O)/C=C/C(=C/C(C5OC4(OC(C=CC34OC3)C5C)C)C)C"  
STD  SMILES_CANONICAL  CACTVS                3.341  "CNC(=O)[C@@H](C)[C@@H]1N([C@@H]2CC[C@H](O)[C@H](C)O2)C(=O)\C(=C(O)/C=C/C(C)=C/[C@@H](C)[C@H]3O[C@@]4(C)O[C@H](C=C[C@@]45CO5)[C@@H]3C)C1=O"  
STD  SMILES            CACTVS                3.341  "CNC(=O)[CH](C)[CH]1N([CH]2CC[CH](O)[CH](C)O2)C(=O)C(=C(O)C=CC(C)=C[CH](C)[CH]3O[C]4(C)O[CH](C=C[C]45CO5)[CH]3C)C1=O"  
STD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H]1[C@H]2C=C[C@@]3(CO3)[C@](O2)(O[C@@H]1[C@H](C)\C=C(/C)\C=C\C(=C/4\C(=O)[C@@H](N(C4=O)[C@@H]5CC[C@@H]([C@@H](O5)C)O)[C@H](C)C(=O)NC)\O)C"  
STD  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1C2C=CC3(CO3)C(O2)(OC1C(C)C=C(C)C=CC(=C4C(=O)C(N(C4=O)C5CCC(C(O5)C)O)C(C)C(=O)NC)O)C"  
STD  InChI             InChI                 1.03   "InChI=1S/C32H44N2O9/c1-16(14-17(2)28-18(3)23-12-13-32(15-40-32)31(6,42-23)43-28)8-9-22(36)25-27(37)26(19(4)29(38)33-7)34(30(25)39)24-11-10-21(35)20(5)41-24/h8-9,12-14,17-21,23-24,26,28,35-36H,10-11,15H2,1-7H3,(H,33,38)/b9-8+,16-14+,25-22+/t17-,18+,19+,20+,21+,23-,24+,26+,28-,31-,32-/m1/s1"  
STD  InChIKey          InChI                 1.03   KVTPRMVXYZKLIG-NCAOFHFGSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
STD  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2S)-2-{(2S,4E)-4-{(2E,4E,6R)-6-[(1R,2R,5R,6S,7R)-1,6-dimethylspiro[8,9-dioxabicyclo[3.3.1]non-3-ene-2,2'-oxiran]-7-yl]-1-hydroxy-4-methylhepta-2,4-dien-1-ylidene}-1-[(2S,5S,6S)-5-hydroxy-6-methyltetrahydro-2H-pyran-2-yl]-3,5-dioxopyrrolidin-2-yl}-N-methylpropanamide"  
STD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-[(2S,4E)-4-[(2E,4E,6R)-6-[(1R,4R,5R,7R,8S)-5,8-dimethylspiro[6,9-dioxabicyclo[3.3.1]non-2-ene-4,2'-oxirane]-7-yl]-1-hydroxy-4-methyl-hepta-2,4-dienylidene]-1-[(2S,5S,6S)-5-hydroxy-6-methyl-oxan-2-yl]-3,5-dioxo-pyrrolidin-2-yl]-N-methyl-propanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
STD  "Create component"   2005-08-01  RCSB  
STD  "Modify descriptor"  2011-06-04  RCSB  
STD  "Modify synonyms"    2020-05-27  PDBE  
STD  "Modify synonyms"    2021-03-13  RCSB  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  STD  2-PYRROLIDINEACETAMIDE  ?  ?  
2  STD  PORTAMYCIN              ?  ?  
##
