data_S5D
# 
_chem_comp.id                                    S5D 
_chem_comp.name                                  "(R)-6-(2-Amino-2-(3-(2-(6-amino-4-methylpyridin-2-yl)ethyl)phenyl)ethyl)-4-methylpyridin-2-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H27 N5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-03-17 
_chem_comp.pdbx_modified_date                    2014-05-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        361.483 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S5D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4CTQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S5D C1   C1   C 0 1 Y N N 16.318 3.811  56.879 -0.131 0.846  -0.103 C1   S5D 1  
S5D C2   C2   C 0 1 Y N N 16.035 2.757  57.734 -1.293 1.533  -0.399 C2   S5D 2  
S5D C3   C3   C 0 1 Y N N 17.091 1.964  58.238 -1.281 2.914  -0.467 C3   S5D 3  
S5D C4   C4   C 0 1 Y N N 18.413 2.227  57.858 -0.108 3.607  -0.238 C4   S5D 4  
S5D C5   C5   C 0 1 Y N N 18.697 3.271  56.989 1.054  2.920  0.060  C5   S5D 5  
S5D C6   C6   C 0 1 Y N N 17.652 4.058  56.495 1.043  1.540  0.126  C6   S5D 6  
S5D N11  N11  N 0 1 Y N N 12.307 -0.403 58.385 -5.461 0.289  -0.470 N11  S5D 7  
S5D C12  C12  C 0 1 Y N N 11.089 -0.842 58.811 -6.597 -0.343 -0.721 C12  S5D 8  
S5D N12  N12  N 0 1 N N N 10.616 -1.942 58.202 -7.475 0.169  -1.670 N12  S5D 9  
S5D C13  C13  C 0 1 Y N N 10.403 -0.186 59.851 -6.920 -1.516 -0.045 C13  S5D 10 
S5D C14  C14  C 0 1 Y N N 11.014 0.943  60.419 -6.038 -2.014 0.896  C14  S5D 11 
S5D C15  C15  C 0 1 Y N N 12.282 1.352  59.948 -4.857 -1.321 1.130  C15  S5D 12 
S5D C16  C16  C 0 1 Y N N 12.942 0.667  58.915 -4.601 -0.164 0.423  C16  S5D 13 
S5D C17  C17  C 0 1 N N N 10.343 1.729  61.529 -6.351 -3.281 1.650  C17  S5D 14 
S5D C18  C18  C 0 1 N N N 14.361 1.019  58.366 -3.321 0.592  0.672  C18  S5D 15 
S5D C19  C19  C 0 1 N N N 14.584 2.504  58.107 -2.572 0.777  -0.649 C19  S5D 16 
S5D N21  N21  N 0 1 Y N N 17.274 8.285  55.502 5.174  0.146  0.490  N21  S5D 17 
S5D C22  C22  C 0 1 Y N N 17.210 9.460  54.838 6.246  -0.575 0.782  C22  S5D 18 
S5D N22  N22  N 0 1 N N N 16.003 10.060 54.688 7.052  -0.208 1.853  N22  S5D 19 
S5D C23  C23  C 0 1 Y N N 18.395 10.044 54.341 6.572  -1.697 0.027  C23  S5D 20 
S5D C24  C24  C 0 1 Y N N 19.619 9.391  54.530 5.761  -2.052 -1.036 C24  S5D 21 
S5D C25  C25  C 0 1 Y N N 19.650 8.180  55.225 4.646  -1.269 -1.309 C25  S5D 22 
S5D C26  C26  C 0 1 Y N N 18.447 7.644  55.694 4.382  -0.169 -0.518 C26  S5D 23 
S5D C27  C27  C 0 1 N N N 20.894 10.008 54.004 6.079  -3.259 -1.879 C27  S5D 24 
S5D C28  C28  C 0 1 N N N 18.423 6.341  56.466 3.175  0.684  -0.809 C28  S5D 25 
S5D C29  C29  C 0 1 N N R 17.945 5.190  55.579 2.311  0.791  0.449  C29  S5D 26 
S5D N29  N29  N 0 1 N N N 19.013 4.844  54.660 3.052  1.511  1.493  N29  S5D 27 
S5D H1   H1   H 0 1 N N N 15.521 4.439  56.509 -0.140 -0.232 -0.045 H1   S5D 28 
S5D H3   H3   H 0 1 N N N 16.878 1.153  58.918 -2.189 3.451  -0.699 H3   S5D 29 
S5D H4   H4   H 0 1 N N N 19.215 1.615  58.243 -0.099 4.686  -0.291 H4   S5D 30 
S5D H5   H5   H 0 1 N N N 19.717 3.474  56.697 1.971  3.462  0.238  H5   S5D 31 
S5D HN12 HN12 H 0 0 N N N 11.274 -2.253 57.516 -7.254 0.986  -2.144 HN12 S5D 32 
S5D HN1A HN1A H 0 0 N N N 10.476 -2.664 58.880 -8.308 -0.290 -1.858 HN1A S5D 33 
S5D H13  H13  H 0 1 N N N 9.443  -0.538 60.199 -7.848 -2.029 -0.252 H13  S5D 34 
S5D H15  H15  H 0 1 N N N 12.756 2.214  60.394 -4.147 -1.684 1.859  H15  S5D 35 
S5D H17  H17  H 0 1 N N N 10.639 1.314  62.504 -5.958 -4.137 1.102  H17  S5D 36 
S5D H17A H17A H 0 0 N N N 10.652 2.783  61.470 -5.889 -3.239 2.637  H17A S5D 37 
S5D H17B H17B H 0 0 N N N 9.251  1.660  61.418 -7.431 -3.382 1.758  H17B S5D 38 
S5D H18  H18  H 0 1 N N N 15.108 0.682  59.100 -3.553 1.568  1.098  H18  S5D 39 
S5D H18A H18A H 0 0 N N N 14.508 0.479  57.419 -2.698 0.031  1.368  H18A S5D 40 
S5D H19  H19  H 0 1 N N N 14.337 3.073  59.016 -3.196 1.338  -1.345 H19  S5D 41 
S5D H19A H19A H 0 0 N N N 13.934 2.831  57.282 -2.340 -0.199 -1.074 H19A S5D 42 
S5D HN22 HN22 H 0 0 N N N 15.296 9.501  55.122 6.828  0.573  2.383  HN22 S5D 43 
S5D HN2A HN2A H 0 0 N N N 16.024 10.963 55.117 7.838  -0.733 2.071  HN2A S5D 44 
S5D H23  H23  H 0 1 N N N 18.358 10.988 53.818 7.447  -2.283 0.267  H23  S5D 45 
S5D H25  H25  H 0 1 N N N 20.585 7.668  55.397 3.993  -1.518 -2.132 H25  S5D 46 
S5D H27  H27  H 0 1 N N N 21.328 10.666 54.772 5.591  -4.137 -1.456 H27  S5D 47 
S5D H27A H27A H 0 0 N N N 21.611 9.212  53.756 5.719  -3.098 -2.895 H27A S5D 48 
S5D H27B H27B H 0 0 N N N 20.672 10.595 53.101 7.158  -3.416 -1.896 H27B S5D 49 
S5D H28  H28  H 0 1 N N N 19.437 6.119  56.829 3.498  1.679  -1.113 H28  S5D 50 
S5D H28A H28A H 0 0 N N N 17.741 6.443  57.323 2.594  0.229  -1.611 H28A S5D 51 
S5D H29  H29  H 0 1 N N N 17.038 5.490  55.034 2.061  -0.209 0.805  H29  S5D 52 
S5D HN29 HN29 H 0 0 N N N 19.195 5.618  54.053 3.874  0.996  1.773  HN29 S5D 53 
S5D HN2B HN2B H 0 0 N N N 19.840 4.625  55.178 3.295  2.441  1.187  HN2B S5D 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S5D C1  C2   DOUB Y N 1  
S5D C1  C6   SING Y N 2  
S5D C2  C3   SING Y N 3  
S5D C2  C19  SING N N 4  
S5D C3  C4   DOUB Y N 5  
S5D C4  C5   SING Y N 6  
S5D C5  C6   DOUB Y N 7  
S5D C6  C29  SING N N 8  
S5D N11 C12  DOUB Y N 9  
S5D N11 C16  SING Y N 10 
S5D C12 N12  SING N N 11 
S5D C12 C13  SING Y N 12 
S5D C13 C14  DOUB Y N 13 
S5D C14 C15  SING Y N 14 
S5D C14 C17  SING N N 15 
S5D C15 C16  DOUB Y N 16 
S5D C16 C18  SING N N 17 
S5D C18 C19  SING N N 18 
S5D N21 C22  DOUB Y N 19 
S5D N21 C26  SING Y N 20 
S5D C22 N22  SING N N 21 
S5D C22 C23  SING Y N 22 
S5D C23 C24  DOUB Y N 23 
S5D C24 C25  SING Y N 24 
S5D C24 C27  SING N N 25 
S5D C25 C26  DOUB Y N 26 
S5D C26 C28  SING N N 27 
S5D C28 C29  SING N N 28 
S5D C29 N29  SING N N 29 
S5D C1  H1   SING N N 30 
S5D C3  H3   SING N N 31 
S5D C4  H4   SING N N 32 
S5D C5  H5   SING N N 33 
S5D N12 HN12 SING N N 34 
S5D N12 HN1A SING N N 35 
S5D C13 H13  SING N N 36 
S5D C15 H15  SING N N 37 
S5D C17 H17  SING N N 38 
S5D C17 H17A SING N N 39 
S5D C17 H17B SING N N 40 
S5D C18 H18  SING N N 41 
S5D C18 H18A SING N N 42 
S5D C19 H19  SING N N 43 
S5D C19 H19A SING N N 44 
S5D N22 HN22 SING N N 45 
S5D N22 HN2A SING N N 46 
S5D C23 H23  SING N N 47 
S5D C25 H25  SING N N 48 
S5D C27 H27  SING N N 49 
S5D C27 H27A SING N N 50 
S5D C27 H27B SING N N 51 
S5D C28 H28  SING N N 52 
S5D C28 H28A SING N N 53 
S5D C29 H29  SING N N 54 
S5D N29 HN29 SING N N 55 
S5D N29 HN2B SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S5D SMILES           ACDLabs              12.01 "n1c(N)cc(cc1CCc2cccc(c2)C(N)Cc3nc(N)cc(c3)C)C"                                                                                                                       
S5D InChI            InChI                1.03  "InChI=1S/C22H27N5/c1-14-8-18(26-21(24)10-14)7-6-16-4-3-5-17(12-16)20(23)13-19-9-15(2)11-22(25)27-19/h3-5,8-12,20H,6-7,13,23H2,1-2H3,(H2,24,26)(H2,25,27)/t20-/m1/s1" 
S5D InChIKey         InChI                1.03  HPGDXHOKQNTRIC-HXUWFJFHSA-N                                                                                                                                           
S5D SMILES_CANONICAL CACTVS               3.385 "Cc1cc(N)nc(CCc2cccc(c2)[C@H](N)Cc3cc(C)cc(N)n3)c1"                                                                                                                   
S5D SMILES           CACTVS               3.385 "Cc1cc(N)nc(CCc2cccc(c2)[CH](N)Cc3cc(C)cc(N)n3)c1"                                                                                                                    
S5D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1cc(nc(c1)N)CCc2cccc(c2)[C@@H](Cc3cc(cc(n3)N)C)N"                                                                                                                  
S5D SMILES           "OpenEye OEToolkits" 1.7.6 "Cc1cc(nc(c1)N)CCc2cccc(c2)C(Cc3cc(cc(n3)N)C)N"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
S5D "SYSTEMATIC NAME" ACDLabs              12.01 "6-[(2R)-2-amino-2-{3-[2-(6-amino-4-methylpyridin-2-yl)ethyl]phenyl}ethyl]-4-methylpyridin-2-amine"     
S5D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "6-[2-[3-[(1R)-1-azanyl-2-(6-azanyl-4-methyl-pyridin-2-yl)ethyl]phenyl]ethyl]-4-methyl-pyridin-2-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S5D "Create component"   2014-03-17 EBI  
S5D "Other modification" 2014-03-20 EBI  
S5D "Initial release"    2014-05-07 RCSB 
# 
