data_S4D
#

_chem_comp.id                                   S4D
_chem_comp.name                                 "(1R,3S)-N-[(2H-1,3-benzodioxol-5-yl)methyl]-3-methylcyclopentan-1-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H19 N O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-04
_chem_comp.pdbx_modified_date                   2020-04-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       233.306
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S4D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5RB7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S4D  C10   C1   C  0  1  Y  N  N  -10.761  92.518  105.927   2.737   1.609   0.615  C10   S4D   1  
S4D  C13   C2   C  0  1  Y  N  N   -9.067  90.464  106.762   1.775  -0.631  -0.702  C13   S4D   2  
S4D  C15   C3   C  0  1  N  N  N   -8.642  93.498  108.810   5.267  -0.876   0.082  C15   S4D   3  
S4D  C17   C4   C  0  1  N  N  N  -12.546  86.081  105.142  -3.576  -1.117   0.181  C17   S4D   4  
S4D  C01   C5   C  0  1  N  N  N  -14.439  84.863  104.306  -5.931  -1.145   1.105  C01   S4D   5  
S4D  C02   C6   C  0  1  N  N  S  -12.953  85.196  104.191  -5.026  -0.603  -0.003  C02   S4D   6  
S4D  C03   C7   C  0  1  N  N  N  -12.599  85.941  102.772  -4.901   0.931   0.104  C03   S4D   7  
S4D  C04   C8   C  0  1  N  N  N  -11.331  86.880  103.087  -3.447   1.279  -0.259  C04   S4D   8  
S4D  C05   C9   C  0  1  N  N  R  -11.237  86.945  104.470  -2.739  -0.055  -0.575  C05   S4D   9  
S4D  C07   C10  C  0  1  N  N  N   -9.966  88.834  105.043  -0.435   0.476  -1.094  C07   S4D  10  
S4D  C08   C11  C  0  1  Y  N  N   -9.969  90.243  105.725   0.969   0.481  -0.544  C08   S4D  11  
S4D  C09   C12  C  0  1  Y  N  N  -10.819  91.265  105.289   1.450   1.600   0.108  C09   S4D  12  
S4D  C11   C13  C  0  1  Y  N  N   -9.840  92.739  106.996   3.548   0.496   0.465  C11   S4D  13  
S4D  C12   C14  C  0  1  Y  N  N   -9.011  91.734  107.412   3.065  -0.630  -0.198  C12   S4D  14  
S4D  N06   N1   N  0  1  N  N  N  -11.320  88.286  104.967  -1.359  -0.036  -0.073  N06   S4D  15  
S4D  O14   O1   O  0  1  N  N  N   -8.210  92.197  108.493   4.046  -1.578  -0.219  O14   S4D  16  
S4D  O16   O2   O  0  1  N  N  N   -9.572  93.878  107.815   4.831   0.251   0.863  O16   S4D  17  
S4D  H101  H1   H  0  0  N  N  N  -11.415  93.315  105.607   3.110   2.484   1.125  H101  S4D  18  
S4D  H131  H2   H  0  0  N  N  N   -8.406  89.670  107.077   1.398  -1.503  -1.217  H131  S4D  19  
S4D  H151  H3   H  0  0  N  N  N   -9.123  93.506  109.799   5.940  -1.508   0.661  H151  S4D  20  
S4D  H152  H4   H  0  0  N  N  N   -7.787  94.190  108.812   5.751  -0.540  -0.835  H152  S4D  21  
S4D  H172  H5   H  0  0  N  N  N  -12.223  85.545  106.047  -3.306  -1.142   1.237  H172  S4D  22  
S4D  H171  H6   H  0  0  N  N  N  -13.365  86.769  105.396  -3.452  -2.100  -0.272  H171  S4D  23  
S4D  H011  H7   H  0  0  N  N  N  -14.631  84.367  105.269  -5.558  -0.813   2.074  H011  S4D  24  
S4D  H013  H8   H  0  0  N  N  N  -15.028  85.790  104.248  -6.945  -0.774   0.960  H013  S4D  25  
S4D  H012  H9   H  0  0  N  N  N  -14.729  84.192  103.484  -5.934  -2.235   1.071  H012  S4D  26  
S4D  H021  H10  H  0  0  N  N  N  -12.371  84.263  104.233  -5.411  -0.889  -0.982  H021  S4D  27  
S4D  H032  H11  H  0  0  N  N  N  -12.346  85.199  102.000  -5.586   1.411  -0.595  H032  S4D  28  
S4D  H031  H12  H  0  0  N  N  N  -13.452  86.547  102.432  -5.119   1.253   1.122  H031  S4D  29  
S4D  H042  H13  H  0  0  N  N  N  -10.416  86.442  102.662  -3.426   1.929  -1.134  H042  S4D  30  
S4D  H041  H14  H  0  0  N  N  N  -11.486  87.885  102.667  -2.959   1.771   0.582  H041  S4D  31  
S4D  H051  H15  H  0  0  N  N  N  -10.316  86.461  104.827  -2.754  -0.250  -1.647  H051  S4D  32  
S4D  H071  H16  H  0  0  N  N  N   -9.334  88.151  105.630  -0.721   1.492  -1.366  H071  S4D  33  
S4D  H072  H17  H  0  0  N  N  N   -9.558  88.928  104.026  -0.477  -0.162  -1.976  H072  S4D  34  
S4D  H091  H18  H  0  0  N  N  N  -11.509  91.095  104.476   0.820   2.470   0.223  H091  S4D  35  
S4D  H061  H19  H  0  0  N  N  N  -11.735  88.284  105.877  -1.077  -0.952   0.243  H061  S4D  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S4D  C02  C01   SING  N  N   1  
S4D  C03  C02   SING  N  N   2  
S4D  C04  C03   SING  N  N   3  
S4D  C05  C04   SING  N  N   4  
S4D  C07  N06   SING  N  N   5  
S4D  C08  C07   SING  N  N   6  
S4D  C09  C08   DOUB  Y  N   7  
S4D  C10  C09   SING  Y  N   8  
S4D  C11  C10   DOUB  Y  N   9  
S4D  C12  C11   SING  Y  N  10  
S4D  C13  C12   DOUB  Y  N  11  
S4D  O14  C12   SING  N  N  12  
S4D  C15  O14   SING  N  N  13  
S4D  O16  C15   SING  N  N  14  
S4D  N06  C05   SING  N  N  15  
S4D  C17  C05   SING  N  N  16  
S4D  C02  C17   SING  N  N  17  
S4D  C08  C13   SING  Y  N  18  
S4D  C11  O16   SING  N  N  19  
S4D  C10  H101  SING  N  N  20  
S4D  C13  H131  SING  N  N  21  
S4D  C15  H151  SING  N  N  22  
S4D  C15  H152  SING  N  N  23  
S4D  C17  H172  SING  N  N  24  
S4D  C17  H171  SING  N  N  25  
S4D  C01  H011  SING  N  N  26  
S4D  C01  H013  SING  N  N  27  
S4D  C01  H012  SING  N  N  28  
S4D  C02  H021  SING  N  N  29  
S4D  C03  H032  SING  N  N  30  
S4D  C03  H031  SING  N  N  31  
S4D  C04  H042  SING  N  N  32  
S4D  C04  H041  SING  N  N  33  
S4D  C05  H051  SING  N  N  34  
S4D  C07  H071  SING  N  N  35  
S4D  C07  H072  SING  N  N  36  
S4D  C09  H091  SING  N  N  37  
S4D  N06  H061  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S4D  SMILES            ACDLabs               12.01  "c1cc(cc2c1OCO2)CNC3CC(C)CC3"  
S4D  InChI             InChI                 1.03   "InChI=1S/C14H19NO2/c1-10-2-4-12(6-10)15-8-11-3-5-13-14(7-11)17-9-16-13/h3,5,7,10,12,15H,2,4,6,8-9H2,1H3"  
S4D  InChIKey          InChI                 1.03   XIPYONXASDNYLO-UHFFFAOYSA-N  
S4D  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1CC[C@H](C1)NCc2ccc3OCOc3c2"  
S4D  SMILES            CACTVS                3.385  "C[CH]1CC[CH](C1)NCc2ccc3OCOc3c2"  
S4D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H]1CC[C@H](C1)NCc2ccc3c(c2)OCO3"  
S4D  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CCC(C1)NCc2ccc3c(c2)OCO3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S4D  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,3S)-N-[(2H-1,3-benzodioxol-5-yl)methyl]-3-methylcyclopentan-1-amine"  
S4D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{R},3~{S})-~{N}-(1,3-benzodioxol-5-ylmethyl)-3-methyl-cyclopentan-1-amine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S4D  "Create component"               2020-03-04  RCSB  
S4D  "Modify model coordinates code"  2020-03-06  RCSB  
S4D  "Other modification"             2020-03-25  RCSB  
S4D  "Initial release"                2020-04-22  RCSB  
##
