data_S2D
# 
_chem_comp.id                                    S2D 
_chem_comp.name                                  N-BENZOYL-D-ALANINE 
_chem_comp.type                                  "D-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C10 H11 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-12-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        193.199 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     S2D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S2D O2   O2   O 0 1 N N N N N N 12.469 34.822 59.859 0.111  -1.929 0.467  O2   S2D 1  
S2D C4   C4   C 0 1 N N N N N N 12.412 33.814 60.555 0.280  -0.766 0.157  C4   S2D 2  
S2D C27  C27  C 0 1 Y N N N N N 12.705 32.503 59.789 1.650  -0.217 0.065  C27  S2D 3  
S2D C32  C32  C 0 1 Y N N N N N 12.526 32.431 58.371 2.751  -1.031 0.334  C32  S2D 4  
S2D C31  C31  C 0 1 Y N N N N N 12.785 31.255 57.637 4.027  -0.513 0.247  C31  S2D 5  
S2D C30  C30  C 0 1 Y N N N N N 13.259 30.116 58.320 4.215  0.812  -0.106 C30  S2D 6  
S2D C29  C29  C 0 1 Y N N N N N 13.472 30.174 59.710 3.128  1.624  -0.374 C29  S2D 7  
S2D C28  C28  C 0 1 Y N N N N N 13.200 31.351 60.446 1.848  1.116  -0.297 C28  S2D 8  
S2D N1   N1   N 0 1 N N N N N N 12.201 33.799 61.945 -0.781 0.021  -0.109 N1   S2D 9  
S2D C2   C2   C 0 1 N N R N N N 11.251 34.317 63.010 -2.138 -0.525 -0.024 C2   S2D 10 
S2D C3   C3   C 0 1 N N N N N N 10.410 33.303 63.878 -2.497 -1.206 -1.347 C3   S2D 11 
S2D C1   C1   C 0 1 N N N N N N 10.478 35.584 62.713 -3.112 0.592  0.247  C1   S2D 12 
S2D O1   O1   O 0 1 N N N N N N 9.398  35.688 62.038 -2.714 1.728  0.357  O1   S2D 13 
S2D OXT  OXT  O 0 1 N Y N N N N 11.257 36.667 63.326 -4.422 0.326  0.365  OXT  S2D 14 
S2D H1   H1   H 0 1 N Y N N N N 12.924 33.264 62.382 -0.646 0.949  -0.357 H1   S2D 15 
S2D H32  H32  H 0 1 N N N N N N 12.180 33.308 57.844 2.605  -2.065 0.611  H32  S2D 16 
S2D H28  H28  H 0 1 N N N N N N 13.370 31.371 61.512 1.000  1.750  -0.511 H28  S2D 17 
S2D H31  H31  H 0 1 N N N N N N 12.623 31.227 56.570 4.879  -1.142 0.455  H31  S2D 18 
S2D H30  H30  H 0 1 N N N N N N 13.458 29.203 57.779 5.216  1.213  -0.173 H30  S2D 19 
S2D H29  H29  H 0 1 N N N N N N 13.850 29.303 60.225 3.282  2.658  -0.648 H29  S2D 20 
S2D H2   H2   H 0 1 N N N N N N 12.068 34.604 63.689 -2.186 -1.253 0.785  H2   S2D 21 
S2D H3C1 H3C1 H 0 0 N N N N N N 9.784  33.861 64.590 -1.792 -2.014 -1.543 H3C1 S2D 22 
S2D H3C2 H3C2 H 0 0 N N N N N N 9.767  32.701 63.219 -3.507 -1.612 -1.283 H3C2 S2D 23 
S2D H3C3 H3C3 H 0 0 N N N N N N 11.092 32.640 64.430 -2.448 -0.477 -2.156 H3C3 S2D 24 
S2D HXT  HXT  H 0 1 N Y N N N N 10.836 37.500 63.149 -5.009 1.075  0.539  HOT  S2D 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S2D O2  C4   DOUB N N 1  
S2D C4  C27  SING N N 2  
S2D C4  N1   SING N N 3  
S2D C27 C32  SING Y N 4  
S2D C27 C28  DOUB Y N 5  
S2D C32 C31  DOUB Y N 6  
S2D C32 H32  SING N N 7  
S2D C31 C30  SING Y N 8  
S2D C31 H31  SING N N 9  
S2D C30 C29  DOUB Y N 10 
S2D C30 H30  SING N N 11 
S2D C29 C28  SING Y N 12 
S2D C29 H29  SING N N 13 
S2D C28 H28  SING N N 14 
S2D N1  C2   SING N N 15 
S2D N1  H1   SING N N 16 
S2D C2  C3   SING N N 17 
S2D C2  C1   SING N N 18 
S2D C2  H2   SING N N 19 
S2D C3  H3C1 SING N N 20 
S2D C3  H3C2 SING N N 21 
S2D C3  H3C3 SING N N 22 
S2D C1  O1   DOUB N N 23 
S2D C1  OXT  SING N N 24 
S2D OXT HXT  SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S2D SMILES           ACDLabs              12.01 "O=C(NC(C(=O)O)C)c1ccccc1"                                                                      
S2D SMILES_CANONICAL CACTVS               3.370 "C[C@@H](NC(=O)c1ccccc1)C(O)=O"                                                                 
S2D SMILES           CACTVS               3.370 "C[CH](NC(=O)c1ccccc1)C(O)=O"                                                                   
S2D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@H](C(=O)O)NC(=O)c1ccccc1"                                                                  
S2D SMILES           "OpenEye OEToolkits" 1.7.0 "CC(C(=O)O)NC(=O)c1ccccc1"                                                                      
S2D InChI            InChI                1.03  "InChI=1S/C10H11NO3/c1-7(10(13)14)11-9(12)8-5-3-2-4-6-8/h2-7H,1H3,(H,11,12)(H,13,14)/t7-/m1/s1" 
S2D InChIKey         InChI                1.03  UAQVHNZEONHPQG-SSDOTTSWSA-N                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
S2D "SYSTEMATIC NAME" ACDLabs              12.01 N-benzoyl-D-alanine              
S2D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R)-2-benzamidopropanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S2D "Create component"  2006-12-23 RCSB 
S2D "Modify descriptor" 2011-06-04 RCSB 
S2D "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            S2D 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
