data_R5D
#

_chem_comp.id                                   R5D
_chem_comp.name                                 "(1R,2R)-2-cyano-N-[(1S,5R)-3-(5-fluoro-2-{[1-(2-hydroxyethyl)-1H-pyrazol-4-yl]amino}pyrimidin-4-yl)-3-azabicyclo[3.1.0]hexan-1-yl]cyclopropane-1-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H21 F N8 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-01-30
_chem_comp.pdbx_modified_date                   2020-04-03
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       412.421
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    R5D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VNS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R5D  N3   N1   N  0  1  N  N  N   9.684  -11.640  17.474  -2.451   0.567  -0.023  N3   R5D   1  
R5D  C4   C1   C  0  1  N  N  N   5.843  -10.508  20.470  -7.014   2.424   0.088  C4   R5D   2  
R5D  N2   N2   N  0  1  Y  N  N   7.561  -12.266  20.331  -5.926   0.177   0.628  N2   R5D   3  
R5D  C7   C2   C  0  1  Y  N  N  10.409  -10.803  14.104  -1.982  -2.818   0.986  C7   R5D   4  
R5D  C6   C3   C  0  1  Y  N  N   9.599  -10.983  16.257  -1.822  -0.633   0.265  C6   R5D   5  
R5D  C9   C4   C  0  1  Y  N  N   8.676   -9.314  14.913   0.119  -1.873   0.354  C9   R5D   6  
R5D  C13  C5   C  0  1  N  N  S   7.107   -6.051  14.239   3.391  -1.156  -1.034  C13  R5D   7  
R5D  C8   C6   C  0  1  Y  N  N   9.491   -9.776  13.840  -0.618  -2.966   0.820  C8   R5D   8  
R5D  N5   N3   N  0  1  Y  N  N   8.686   -9.966  16.127  -0.512  -0.732   0.097  N5   R5D   9  
R5D  C18  C7   C  0  1  N  N  R   2.671   -5.186  12.128   6.005   2.842   0.549  C18  R5D  10  
R5D  C16  C8   C  0  1  N  N  R   4.041   -4.643  12.533   5.971   1.330   0.314  C16  R5D  11  
R5D  C19  C9   C  0  1  N  N  N   2.214   -4.846  10.816   7.284   3.536   0.330  C19  R5D  12  
R5D  C1   C10  C  0  1  Y  N  N   8.606  -12.561  19.518  -4.713  -0.312   0.597  C1   R5D  13  
R5D  C2   C11  C  0  1  Y  N  N   8.695  -11.587  18.459  -3.842   0.692   0.149  C2   R5D  14  
R5D  C3   C12  C  0  1  Y  N  N   7.656  -10.680  18.670  -4.580   1.807  -0.089  C3   R5D  15  
R5D  N1   N4   N  0  1  Y  N  N   6.984  -11.150  19.804  -5.875   1.511   0.201  N1   R5D  16  
R5D  C5   C13  C  0  1  N  N  N   6.315   -9.481  21.525  -8.087   1.793  -0.802  C5   R5D  17  
R5D  O1   O1   O  0  1  N  N  N   6.920   -8.380  20.928  -9.199   2.684  -0.913  O1   R5D  18  
R5D  N4   N5   N  0  1  Y  N  N  10.515  -11.415  15.294  -2.547  -1.653   0.701  N4   R5D  19  
R5D  N6   N6   N  0  1  N  N  N   7.844   -8.219  14.846   1.491  -1.973   0.177  N6   R5D  20  
R5D  C10  C14  C  0  1  N  N  N   7.225   -7.665  16.078   1.824  -3.026  -0.817  C10  R5D  21  
R5D  C11  C15  C  0  1  N  N  R   6.830   -6.247  15.721   3.246  -2.668  -1.301  C11  R5D  22  
R5D  C12  C16  C  0  1  N  N  N   7.936   -5.305  15.282   3.385  -1.689  -2.468  C12  R5D  23  
R5D  C14  C17  C  0  1  N  N  N   7.786   -7.299  13.684   2.045  -0.727  -0.412  C14  R5D  24  
R5D  N7   N7   N  0  1  N  N  N   6.240   -5.329  13.369   4.622  -0.584  -0.482  N7   R5D  25  
R5D  C15  C18  C  0  1  N  N  N   4.871   -5.558  13.379   4.706   0.742  -0.254  C15  R5D  26  
R5D  O2   O2   O  0  1  N  N  N   4.366   -6.451  14.053   3.763   1.462  -0.507  O2   R5D  27  
R5D  C17  C19  C  0  1  N  N  N   2.780   -4.092  13.171   5.915   1.884   1.739  C17  R5D  28  
R5D  N8   N8   N  0  1  N  N  N   1.855   -4.582   9.750   8.272   4.071   0.161  N8   R5D  29  
R5D  F1   F1   F  0  1  N  N  N   9.412   -9.275  12.614  -0.011  -4.139   1.102  F1   R5D  30  
R5D  H11  H1   H  0  1  N  N  N  10.502  -12.185  17.658  -1.931   1.323  -0.338  H11  R5D  31  
R5D  H7   H2   H  0  1  N  N  N   5.232   -9.992  19.715  -7.429   2.613   1.078  H7   R5D  32  
R5D  H6   H3   H  0  1  N  N  N   5.237  -11.280  20.967  -6.684   3.365  -0.353  H6   R5D  33  
R5D  H12  H4   H  0  1  N  N  N  11.066  -11.118  13.307  -2.582  -3.643   1.340  H12  R5D  34  
R5D  H3   H5   H  0  1  N  N  N   2.425   -6.189  12.508   5.111   3.411   0.293  H3   R5D  35  
R5D  H2   H6   H  0  1  N  N  N   4.562   -4.002  11.807   6.897   0.850  -0.003  H2   R5D  36  
R5D  H4   H7   H  0  1  N  N  N   9.273  -13.401  19.645  -4.430  -1.318   0.870  H4   R5D  37  
R5D  H5   H8   H  0  1  N  N  N   7.421   -9.804  18.084  -4.207   2.756  -0.443  H5   R5D  38  
R5D  H8   H9   H  0  1  N  N  N   5.446   -9.140  22.106  -7.672   1.605  -1.793  H8   R5D  39  
R5D  H9   H10  H  0  1  N  N  N   7.038   -9.966  22.197  -8.417   0.853  -0.362  H9   R5D  40  
R5D  H10  H11  H  0  1  N  N  N   7.199   -7.768  21.599  -9.918   2.348  -1.464  H10  R5D  41  
R5D  H14  H12  H  0  1  N  N  N   6.339   -8.252  16.362   1.820  -4.009  -0.345  H14  R5D  42  
R5D  H13  H13  H  0  1  N  N  N   7.948   -7.667  16.907   1.120  -3.000  -1.648  H13  R5D  43  
R5D  H1   H14  H  0  1  N  N  N   5.910   -5.825  16.151   4.048  -3.370  -1.075  H1   R5D  44  
R5D  H16  H15  H  0  1  N  N  N   8.989   -5.578  15.446   2.498  -1.498  -3.072  H16  R5D  45  
R5D  H15  H16  H  0  1  N  N  N   7.815   -4.219  15.407   4.331  -1.684  -3.010  H15  R5D  46  
R5D  H17  H17  H  0  1  N  N  N   7.193   -7.737  12.867   2.206   0.021   0.365  H17  R5D  47  
R5D  H18  H18  H  0  1  N  N  N   8.797   -7.065  13.319   1.376  -0.340  -1.181  H18  R5D  48  
R5D  H19  H19  H  0  1  N  N  N   6.622   -4.649  12.743   5.376  -1.160  -0.279  H19  R5D  49  
R5D  H20  H20  H  0  1  N  N  N   2.445   -3.072  12.933   6.804   1.768   2.360  H20  R5D  50  
R5D  H21  H21  H  0  1  N  N  N   2.556   -4.314  14.225   4.963   1.823   2.266  H21  R5D  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R5D  N8   C19  TRIP  N  N   1  
R5D  C19  C18  SING  N  N   2  
R5D  C18  C16  SING  N  N   3  
R5D  C18  C17  SING  N  N   4  
R5D  C16  C17  SING  N  N   5  
R5D  C16  C15  SING  N  N   6  
R5D  F1   C8   SING  N  N   7  
R5D  N7   C15  SING  N  N   8  
R5D  N7   C13  SING  N  N   9  
R5D  C15  O2   DOUB  N  N  10  
R5D  C14  C13  SING  N  N  11  
R5D  C14  N6   SING  N  N  12  
R5D  C8   C7   DOUB  Y  N  13  
R5D  C8   C9   SING  Y  N  14  
R5D  C7   N4   SING  Y  N  15  
R5D  C13  C12  SING  N  N  16  
R5D  C13  C11  SING  N  N  17  
R5D  N6   C9   SING  N  N  18  
R5D  N6   C10  SING  N  N  19  
R5D  C9   N5   DOUB  Y  N  20  
R5D  C12  C11  SING  N  N  21  
R5D  N4   C6   DOUB  Y  N  22  
R5D  C11  C10  SING  N  N  23  
R5D  N5   C6   SING  Y  N  24  
R5D  C6   N3   SING  N  N  25  
R5D  N3   C2   SING  N  N  26  
R5D  C2   C3   DOUB  Y  N  27  
R5D  C2   C1   SING  Y  N  28  
R5D  C3   N1   SING  Y  N  29  
R5D  C1   N2   DOUB  Y  N  30  
R5D  N1   N2   SING  Y  N  31  
R5D  N1   C4   SING  N  N  32  
R5D  C4   C5   SING  N  N  33  
R5D  O1   C5   SING  N  N  34  
R5D  N3   H11  SING  N  N  35  
R5D  C4   H7   SING  N  N  36  
R5D  C4   H6   SING  N  N  37  
R5D  C7   H12  SING  N  N  38  
R5D  C18  H3   SING  N  N  39  
R5D  C16  H2   SING  N  N  40  
R5D  C1   H4   SING  N  N  41  
R5D  C3   H5   SING  N  N  42  
R5D  C5   H8   SING  N  N  43  
R5D  C5   H9   SING  N  N  44  
R5D  O1   H10  SING  N  N  45  
R5D  C10  H14  SING  N  N  46  
R5D  C10  H13  SING  N  N  47  
R5D  C11  H1   SING  N  N  48  
R5D  C12  H16  SING  N  N  49  
R5D  C12  H15  SING  N  N  50  
R5D  C14  H17  SING  N  N  51  
R5D  C14  H18  SING  N  N  52  
R5D  N7   H19  SING  N  N  53  
R5D  C17  H20  SING  N  N  54  
R5D  C17  H21  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R5D  SMILES            ACDLabs               12.01  "N(c1cnn(CCO)c1)c2nc(c(cn2)F)N4CC3C(C3)(C4)NC(C5C(C5)C#N)=O"  
R5D  InChI             InChI                 1.03   "InChI=1S/C19H21FN8O2/c20-15-7-22-18(24-13-6-23-28(9-13)1-2-29)25-16(15)27-8-12-4-19(12,10-27)26-17(30)14-3-11(14)5-21/h6-7,9,11-12,14,29H,1-4,8,10H2,(H,26,30)(H,22,24,25)/t11-,12+,14+,19+/m0/s1"  
R5D  InChIKey          InChI                 1.03   OCNRQCROIYCWQL-QULAYQROSA-N  
R5D  SMILES_CANONICAL  CACTVS                3.385  "OCCn1cc(Nc2ncc(F)c(n2)N3C[C@H]4C[C@]4(C3)NC(=O)[C@@H]5C[C@H]5C#N)cn1"  
R5D  SMILES            CACTVS                3.385  "OCCn1cc(Nc2ncc(F)c(n2)N3C[CH]4C[C]4(C3)NC(=O)[CH]5C[CH]5C#N)cn1"  
R5D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1c(cn(n1)CCO)Nc2ncc(c(n2)N3C[C@H]4C[C@]4(C3)NC(=O)[C@@H]5C[C@H]5C#N)F"  
R5D  SMILES            "OpenEye OEToolkits"  2.0.7  "c1c(cn(n1)CCO)Nc2ncc(c(n2)N3CC4CC4(C3)NC(=O)C5CC5C#N)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R5D  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2R)-2-cyano-N-[(1S,5R)-3-(5-fluoro-2-{[1-(2-hydroxyethyl)-1H-pyrazol-4-yl]amino}pyrimidin-4-yl)-3-azabicyclo[3.1.0]hexan-1-yl]cyclopropane-1-carboxamide"  
R5D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{R},2~{R})-2-cyano-~{N}-[(1~{S},5~{R})-3-[5-fluoranyl-2-[[1-(2-hydroxyethyl)pyrazol-4-yl]amino]pyrimidin-4-yl]-3-azabicyclo[3.1.0]hexan-1-yl]cyclopropane-1-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R5D  "Create component"  2020-01-30  RCSB  
R5D  "Initial release"   2020-04-08  RCSB  
##
