data_R3D
# 
_chem_comp.id                                    R3D 
_chem_comp.name                                  "Ru2-(OH)8 cluster" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "H8 O8 Ru2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-22 
_chem_comp.pdbx_modified_date                    2023-06-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        338.199 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R3D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BPH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R3D O1  O1  O  0 1 N N N -22.266 2.271 11.715 2.131  0.147  1.585  O1  R3D 1  
R3D O2  O2  O  0 1 N N N -23.123 2.768 10.014 -2.131 -0.147 -1.585 O2  R3D 2  
R3D O3  O3  O  0 1 N N N -23.382 4.704 12.727 1.170  -1.852 0.225  O3  R3D 3  
R3D O4  O4  O  0 1 N N N -24.668 4.925 10.846 -1.170 1.852  -0.225 O4  R3D 4  
R3D O5  O5  O  0 1 N N N -25.597 3.260 13.756 2.128  -0.239 -1.578 O5  R3D 5  
R3D O6  O6  O  0 1 N N N -26.736 3.138 11.744 -2.128 0.239  1.578  O6  R3D 6  
R3D O7  O7  O  0 1 N N N -24.449 0.809 12.836 1.250  1.800  -0.221 O7  R3D 7  
R3D O8  O8  O  0 1 N N N -25.250 0.926 10.711 -1.250 -1.800 0.221  O8  R3D 8  
R3D RU1 RU1 RU 0 0 N N N -23.898 2.752 12.799 1.210  -0.026 0.002  RU1 R3D 9  
R3D RU2 RU2 RU 0 0 N N N -24.967 2.926 10.802 -1.210 0.026  -0.002 RU2 R3D 10 
R3D H1  H1  H  0 1 N N N -21.534 2.111 12.299 2.347  1.061  1.816  H1  R3D 11 
R3D H2  H2  H  0 1 N N N -22.734 3.632 9.942  -2.347 -1.061 -1.816 H2  R3D 12 
R3D H3  H3  H  0 1 N N N -22.883 4.929 13.503 0.719  -2.326 -0.488 H3  R3D 13 
R3D H4  H4  H  0 1 N N N -25.436 5.353 11.205 -0.719 2.326  0.488  H4  R3D 14 
R3D H5  H5  H  0 1 N N N -25.442 3.271 14.693 1.559  -0.322 -2.356 H5  R3D 15 
R3D H6  H6  H  0 1 N N N -27.441 2.908 11.150 -1.559 0.322  2.356  H6  R3D 16 
R3D H7  H7  H  0 1 N N N -24.123 0.402 13.630 2.141  2.171  -0.267 H7  R3D 17 
R3D H8  H8  H  0 1 N N N -26.112 0.712 11.049 -2.141 -2.171 0.267  H8  R3D 18 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R3D O2  RU2 SING N N 1  
R3D O8  RU2 SING N N 2  
R3D RU2 O4  SING N N 3  
R3D RU2 O6  SING N N 4  
R3D RU2 RU1 SING N N 5  
R3D O1  RU1 SING N N 6  
R3D O3  RU1 SING N N 7  
R3D RU1 O7  SING N N 8  
R3D RU1 O5  SING N N 9  
R3D O1  H1  SING N N 10 
R3D O2  H2  SING N N 11 
R3D O3  H3  SING N N 12 
R3D O4  H4  SING N N 13 
R3D O5  H5  SING N N 14 
R3D O6  H6  SING N N 15 
R3D O7  H7  SING N N 16 
R3D O8  H8  SING N N 17 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R3D InChI            InChI                1.06    InChI=1S/8H2O.2Ru/h8*1H2;;/q;;;;;;;;2*+4/p-8 
R3D InChIKey         InChI                1.06    SLNUTTKQNQBOGX-UHFFFAOYSA-F                  
R3D SMILES_CANONICAL CACTVS               3.385   "O[Ru](O)(O)O.O[Ru](O)(O)O"                  
R3D SMILES           CACTVS               3.385   "O[Ru](O)(O)O.O[Ru](O)(O)O"                  
R3D SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "O[Ru](O)(O)(O)[Ru](O)(O)(O)O"               
R3D SMILES           "OpenEye OEToolkits" 3.1.0.0 "O[Ru](O)(O)(O)[Ru](O)(O)(O)O"               
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R3D "Create component" 2022-11-22 PDBE 
R3D "Initial release"  2023-06-28 RCSB 
# 
