data_QMD
#

_chem_comp.id                                   QMD
_chem_comp.name                                 "2-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-[2,4,8-tris(oxidanylidene)-1,9-dihydropyrimido[4,5-b]quinolin-10-yl]pentoxy]phosphoryl]oxyprop-2-enoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H20 N3 O12 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-11-20
_chem_comp.pdbx_modified_date                   2020-05-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       513.349
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    QMD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6UW7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QMD  C1   C1   C  0  1  N  N  R  42.782  18.171  14.454   1.281   0.167   0.079  C1   QMD   1  
QMD  O1   O1   O  0  1  N  N  N  42.919  16.897  13.836   1.213  -1.105  -0.568  O1   QMD   2  
QMD  C2   C2   C  0  1  N  N  N  43.544  19.247  13.736   2.598   0.275   0.852  C2   QMD   3  
QMD  O2   O2   O  0  1  N  N  N  43.939  18.861  12.417   3.692   0.260  -0.067  O2   QMD   4  
QMD  C3   C3   C  0  1  N  N  N  46.070  17.761   9.814   7.514   0.111  -0.573  C3   QMD   5  
QMD  O3   O3   O  0  1  N  N  N  45.677  17.707  13.598   5.496   1.795   1.074  O3   QMD   6  
QMD  C4   C4   C  0  1  N  N  N  44.904  17.990   9.067   8.052   1.004   0.259  C4   QMD   7  
QMD  O4   O4   O  0  1  N  N  N  44.287  16.514  11.832   5.516  -0.710   1.383  O4   QMD   8  
QMD  C5   C5   C  0  1  N  N  N  47.206  17.032   9.366   8.353  -0.948  -1.160  C5   QMD   9  
QMD  O5   O5   O  0  1  N  N  N  46.069  18.217  11.121   6.191   0.179  -0.881  O5   QMD  10  
QMD  C6   C6   C  0  1  N  N  S  43.222  18.016  15.907   0.107   0.308   1.050  C6   QMD  11  
QMD  O6   O6   O  0  1  N  N  N  47.031  16.089   8.565   7.863  -1.762  -1.919  O6   QMD  12  
QMD  C7   C7   C  0  1  N  N  S  41.982  18.029  16.788  -1.209   0.199   0.278  C7   QMD  13  
QMD  C8   C8   C  0  1  N  N  N  40.970  16.980  16.339  -2.383   0.341   1.248  C8   QMD  14  
QMD  C9   C9   C  0  1  N  N  N  38.721  17.725  16.964  -4.228  -0.982   0.335  C9   QMD  15  
QMD  O8   O7   O  0  1  N  N  N  44.114  19.025  16.304   0.176   1.580   1.698  O8   QMD  16  
QMD  C10  C10  C  0  1  N  N  N  37.702  17.844  17.908  -5.489  -1.084  -0.404  C10  QMD  17  
QMD  C11  C11  C  0  1  N  N  N  37.857  17.276  19.165  -6.079   0.053  -0.923  C11  QMD  18  
QMD  C12  C12  C  0  1  Y  N  N  39.001  16.596  19.497  -5.445   1.299  -0.724  C12  QMD  19  
QMD  C13  C13  C  0  1  Y  N  N  39.167  15.996  20.755  -6.023   2.473  -1.241  C13  QMD  20  
QMD  C14  C14  C  0  1  Y  N  N  40.304  15.323  21.069  -5.410   3.674  -1.049  C14  QMD  21  
QMD  C15  C15  C  0  1  Y  N  N  41.316  15.202  20.147  -4.209   3.751  -0.343  C15  QMD  22  
QMD  C16  C16  C  0  1  Y  N  N  41.173  15.785  18.856  -3.622   2.609   0.174  C16  QMD  23  
QMD  C17  C17  C  0  1  Y  N  N  40.007  16.479  18.538  -4.231   1.373  -0.008  C17  QMD  24  
QMD  C18  C18  C  0  1  N  N  N  36.494  18.559  17.541  -6.082  -2.420  -0.566  C18  QMD  25  
QMD  C19  C19  C  0  1  N  N  N  37.465  18.958  15.362  -4.265  -3.278   0.646  C19  QMD  26  
QMD  N1   N1   N  0  1  N  N  N  39.841  17.017  17.272  -3.643   0.237   0.508  N1   QMD  27  
QMD  N2   N2   N  0  1  N  N  N  36.461  19.074  16.274  -5.416  -3.463  -0.016  N2   QMD  28  
QMD  N3   N3   N  0  1  N  N  N  38.583  18.276  15.732  -3.685  -2.094   0.814  N3   QMD  29  
QMD  O10  O8   O  0  1  N  N  N  42.348  14.595  20.435  -3.612   4.956  -0.161  O10  QMD  30  
QMD  O11  O9   O  0  1  N  N  N  35.543  18.723  18.277  -7.128  -2.582  -1.167  O11  QMD  31  
QMD  O12  O10  O  0  1  N  N  N  37.373  19.447  14.265  -3.710  -4.257   1.113  O12  QMD  32  
QMD  O7   O11  O  0  1  N  N  N  48.299  17.377   9.781   9.665  -1.015  -0.856  O7   QMD  33  
QMD  O9   O12  O  0  1  N  N  N  41.392  19.295  16.743  -1.277  -1.072  -0.370  O9   QMD  34  
QMD  P1   P1   P  0  1  N  N  N  45.032  17.728  12.264   5.230   0.357   0.399  P1   QMD  35  
QMD  H2   H1   H  0  1  N  N  N  41.719  18.454  14.457   1.232   0.958  -0.668  H2   QMD  36  
QMD  H1   H2   H  0  1  N  N  N  43.489  16.971  13.080   1.251  -1.858   0.038  H1   QMD  37  
QMD  H4   H3   H  0  1  N  N  N  44.447  19.486  14.317   2.611   1.207   1.417  H4   QMD  38  
QMD  H3   H4   H  0  1  N  N  N  42.907  20.141  13.665   2.687  -0.567   1.538  H3   QMD  39  
QMD  H19  H5   H  0  1  N  N  N  45.514  16.870  14.016   5.328   2.543   0.484  H19  QMD  40  
QMD  H6   H6   H  0  1  N  N  N  44.065  18.499   9.518   9.108   0.965   0.484  H6   QMD  41  
QMD  H5   H7   H  0  1  N  N  N  44.846  17.657   8.041   7.432   1.765   0.709  H5   QMD  42  
QMD  H7   H8   H  0  1  N  N  N  43.705  17.033  16.013   0.156  -0.483   1.798  H7   QMD  43  
QMD  H9   H9   H  0  1  N  N  N  42.288  17.793  17.818  -1.258   0.991  -0.470  H9   QMD  44  
QMD  H11  H10  H  0  1  N  N  N  40.621  17.208  15.321  -2.334  -0.450   1.996  H11  QMD  45  
QMD  H12  H11  H  0  1  N  N  N  41.434  15.983  16.353  -2.331   1.311   1.742  H12  QMD  46  
QMD  H8   H12  H  0  1  N  N  N  44.361  18.891  17.211   0.137   2.333   1.092  H8   QMD  47  
QMD  H13  H13  H  0  1  N  N  N  37.065  17.371  19.893  -7.008  -0.010  -1.470  H13  QMD  48  
QMD  H14  H14  H  0  1  N  N  N  38.376  16.071  21.487  -6.952   2.421  -1.789  H14  QMD  49  
QMD  H15  H15  H  0  1  N  N  N  40.414  14.881  22.048  -5.857   4.573  -1.448  H15  QMD  50  
QMD  H16  H16  H  0  1  N  N  N  41.964  15.690  18.127  -2.692   2.679   0.720  H16  QMD  51  
QMD  H17  H17  H  0  1  N  N  N  35.639  19.572  15.998  -5.780  -4.358  -0.099  H17  QMD  52  
QMD  H21  H21  H  0  1  N  N  N  48.971  16.823   9.402  10.174  -1.728  -1.265  H21  QMD  53  
QMD  H10  H19  H  0  1  N  N  N  40.618  19.304  17.293  -1.239  -1.825   0.236  H10  QMD  54  
QMD  H18  H18  H  0  1  N  N  N  42.286  14.269  21.325  -3.889   5.415   0.644  H18  QMD  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QMD  O6   C5   DOUB  N  N   1  
QMD  C4   C3   DOUB  N  N   2  
QMD  C5   O7   SING  N  N   3  
QMD  C5   C3   SING  N  N   4  
QMD  C3   O5   SING  N  N   5  
QMD  O5   P1   SING  N  N   6  
QMD  O4   P1   DOUB  N  N   7  
QMD  P1   O2   SING  N  N   8  
QMD  P1   O3   SING  N  N   9  
QMD  O2   C2   SING  N  N  10  
QMD  C2   C1   SING  N  N  11  
QMD  O1   C1   SING  N  N  12  
QMD  O12  C19  DOUB  N  N  13  
QMD  C1   C6   SING  N  N  14  
QMD  C19  N3   SING  N  N  15  
QMD  C19  N2   SING  N  N  16  
QMD  N3   C9   DOUB  N  N  17  
QMD  C6   O8   SING  N  N  18  
QMD  C6   C7   SING  N  N  19  
QMD  N2   C18  SING  N  N  20  
QMD  C8   C7   SING  N  N  21  
QMD  C8   N1   SING  N  N  22  
QMD  O9   C7   SING  N  N  23  
QMD  C9   N1   SING  N  N  24  
QMD  C9   C10  SING  N  N  25  
QMD  N1   C17  SING  N  N  26  
QMD  C18  C10  SING  N  N  27  
QMD  C18  O11  DOUB  N  N  28  
QMD  C10  C11  DOUB  N  N  29  
QMD  C17  C16  DOUB  Y  N  30  
QMD  C17  C12  SING  Y  N  31  
QMD  C16  C15  SING  Y  N  32  
QMD  C11  C12  SING  N  N  33  
QMD  C12  C13  DOUB  Y  N  34  
QMD  C15  O10  SING  N  N  35  
QMD  C15  C14  DOUB  Y  N  36  
QMD  C13  C14  SING  Y  N  37  
QMD  C1   H2   SING  N  N  38  
QMD  O1   H1   SING  N  N  39  
QMD  C2   H4   SING  N  N  40  
QMD  C2   H3   SING  N  N  41  
QMD  O3   H19  SING  N  N  42  
QMD  C4   H6   SING  N  N  43  
QMD  C4   H5   SING  N  N  44  
QMD  C6   H7   SING  N  N  45  
QMD  C7   H9   SING  N  N  46  
QMD  C8   H11  SING  N  N  47  
QMD  C8   H12  SING  N  N  48  
QMD  O8   H8   SING  N  N  49  
QMD  C11  H13  SING  N  N  50  
QMD  C13  H14  SING  N  N  51  
QMD  C14  H15  SING  N  N  52  
QMD  C16  H16  SING  N  N  53  
QMD  N2   H17  SING  N  N  54  
QMD  O7   H21  SING  N  N  55  
QMD  O9   H10  SING  N  N  56  
QMD  O10  H18  SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QMD  SMILES            ACDLabs               12.01  "C(C(O)C(CN2C=3C(=Cc1ccc(O)cc12)C(=O)NC(N=3)=O)O)(O)COP(O)(=O)O\C(=C)C(O)=O"  
QMD  InChI             InChI                 1.03   "InChI=1S/C19H20N3O12P/c1-8(18(28)29)34-35(31,32)33-7-14(25)15(26)13(24)6-22-12-5-10(23)3-2-9(12)4-11-16(22)20-19(30)21-17(11)27/h2-5,13-15,23-26H,1,6-7H2,(H,28,29)(H,31,32)(H,21,27,30)/t13-,14+,15-/m0/s1"  
QMD  InChIKey          InChI                 1.03   QMXZMTIOXGWNQW-ZNMIVQPWSA-N  
QMD  SMILES_CANONICAL  CACTVS                3.385  "O[C@H](CO[P](O)(=O)OC(=C)C(O)=O)[C@@H](O)[C@@H](O)CN1c2cc(O)ccc2C=C3C(=O)NC(=O)N=C13"  
QMD  SMILES            CACTVS                3.385  "O[CH](CO[P](O)(=O)OC(=C)C(O)=O)[CH](O)[CH](O)CN1c2cc(O)ccc2C=C3C(=O)NC(=O)N=C13"  
QMD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C=C(C(=O)O)OP(=O)(O)OC[C@H]([C@H]([C@H](CN1c2cc(ccc2C=C3C1=NC(=O)NC3=O)O)O)O)O"  
QMD  SMILES            "OpenEye OEToolkits"  2.0.7  "C=C(C(=O)O)OP(=O)(O)OCC(C(C(CN1c2cc(ccc2C=C3C1=NC(=O)NC3=O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
QMD  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-O-[(S)-[(1-carboxyethenyl)oxy](hydroxy)phosphoryl]-1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol"  
QMD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-[oxidanyl-[(2~{R},3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-[8-oxidanyl-2,4-bis(oxidanylidene)pyrimido[4,5-b]quinolin-10-yl]pentoxy]phosphoryl]oxyprop-2-enoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QMD  "Create component"  2019-11-20  RCSB  
QMD  "Initial release"   2020-05-13  RCSB  
##
