data_P8D
#

_chem_comp.id                                   P8D
_chem_comp.name                                 "phosphinate pseudodipeptide L-Ala-D-Asp"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C7 H14 N O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2R)-2-{[(R)-[(1R)-1-aminoethyl](hydroxy)phosphoryl]methyl}butanedioic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-10-23
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       239.163
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P8D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3K5X
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P8D  C1    C1    C  0  1  N  N  N  -24.977  32.089  -15.485   4.457  -0.307   0.384  C1    P8D   1  
P8D  N1    N1    N  0  1  N  N  N  -23.779  30.172  -16.446   3.361   0.366  -1.700  N1    P8D   2  
P8D  C2    C2    C  0  1  N  N  R  -24.401  30.687  -15.216   3.286  -0.565  -0.566  C2    P8D   3  
P8D  P3    P3    P  0  1  N  N  N  -25.661  29.448  -14.741   1.715  -0.311   0.325  P3    P8D   4  
P8D  C4    C4    C  0  1  N  N  N  -26.257  29.851  -13.078   0.319  -0.618  -0.806  C4    P8D   5  
P8D  C5    C5    C  0  1  N  N  R  -27.788  30.040  -12.856  -0.995  -0.285  -0.097  C5    P8D   6  
P8D  C6    C6    C  0  1  N  N  N  -28.601  28.824  -13.364  -1.156   1.212  -0.014  C6    P8D   7  
P8D  C7    C7    C  0  1  N  N  N  -28.039  30.463  -11.393  -2.165  -0.881  -0.882  C7    P8D   8  
P8D  C8    C8    C  0  1  N  N  N  -27.610  31.857  -10.916  -3.446  -0.660  -0.121  C8    P8D   9  
P8D  O31   O31   O  0  1  N  N  N  -25.096  28.073  -14.713   1.650   1.081   0.823  O31   P8D  10  
P8D  O32   O32   O  0  1  N  N  N  -26.874  29.518  -15.773   1.632  -1.330   1.568  O32   P8D  11  
P8D  O61   O61   O  0  1  N  N  N  -29.829  28.936  -13.405  -2.243   1.738   0.572  O61   P8D  12  
P8D  O62   O62   O  0  1  N  N  N  -27.986  27.799  -13.732  -0.308   1.937  -0.476  O62   P8D  13  
P8D  O81   O81   O  0  1  N  N  N  -27.884  32.836  -11.636  -4.610  -1.102  -0.623  O81   P8D  14  
P8D  O82   O82   O  0  1  N  N  N  -27.008  31.901   -9.827  -3.426  -0.084   0.941  O82   P8D  15  
P8D  H1    H1    H  0  1  N  N  N  -25.443  32.477  -14.567   4.409   0.718   0.751  H1    P8D  16  
P8D  H1A   H1A   H  0  1  N  N  N  -24.167  32.764  -15.798   4.401  -0.997   1.225  H1A   P8D  17  
P8D  H1B   H1B   H  0  1  N  N  N  -25.733  32.028  -16.282   5.396  -0.459  -0.149  H1B   P8D  18  
P8D  HN1   HN1   H  0  1  N  N  N  -23.404  29.261  -16.274   2.635   0.173  -2.374  HN1   P8D  19  
P8D  HN1A  HN1A  H  0  0  N  N  N  -24.467  30.118  -17.170   3.318   1.323  -1.386  HN1A  P8D  20  
P8D  H2    H2    H  0  1  N  N  N  -23.692  30.816  -14.385   3.333  -1.590  -0.933  H2    P8D  21  
P8D  H4    H4    H  0  1  N  N  N  -25.947  29.021  -12.426   0.423   0.010  -1.691  H4    P8D  22  
P8D  H4A   H4A   H  0  1  N  N  N  -25.781  30.802  -12.798   0.315  -1.666  -1.104  H4A   P8D  23  
P8D  H5    H5    H  0  1  N  N  N  -28.171  30.863  -13.477  -0.981  -0.704   0.909  H5    P8D  24  
P8D  H7    H7    H  0  1  N  N  N  -29.127  30.409  -11.242  -2.232  -0.397  -1.857  H7    P8D  25  
P8D  H7A   H7A   H  0  1  N  N  N  -27.490  29.743  -10.768  -2.003  -1.951  -1.018  H7A   P8D  26  
P8D  H12   H12   H  0  1  N  N  N  -27.001  28.665  -16.171   1.670  -2.263   1.315  H12   P8D  27  
P8D  H13   H13   H  0  1  N  N  N  -30.209  28.137  -13.752  -2.302   2.703   0.601  H13   P8D  28  
P8D  H16   H16   H  0  1  N  N  N  -27.562  33.631  -11.227  -5.405  -0.937  -0.098  H16   P8D  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P8D  C1   C2    SING  N  N   1  
P8D  C1   H1    SING  N  N   2  
P8D  C1   H1A   SING  N  N   3  
P8D  C1   H1B   SING  N  N   4  
P8D  N1   C2    SING  N  N   5  
P8D  N1   HN1   SING  N  N   6  
P8D  N1   HN1A  SING  N  N   7  
P8D  C2   P3    SING  N  N   8  
P8D  C2   H2    SING  N  N   9  
P8D  P3   C4    SING  N  N  10  
P8D  P3   O31   DOUB  N  N  11  
P8D  P3   O32   SING  N  N  12  
P8D  C4   C5    SING  N  N  13  
P8D  C4   H4    SING  N  N  14  
P8D  C4   H4A   SING  N  N  15  
P8D  C5   C6    SING  N  N  16  
P8D  C5   C7    SING  N  N  17  
P8D  C5   H5    SING  N  N  18  
P8D  C6   O61   SING  N  N  19  
P8D  C6   O62   DOUB  N  N  20  
P8D  C7   C8    SING  N  N  21  
P8D  C7   H7    SING  N  N  22  
P8D  C7   H7A   SING  N  N  23  
P8D  C8   O81   SING  N  N  24  
P8D  C8   O82   DOUB  N  N  25  
P8D  O32  H12   SING  N  N  26  
P8D  O61  H13   SING  N  N  27  
P8D  O81  H16   SING  N  N  28  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P8D  SMILES            ACDLabs               11.02  "O=P(O)(C(N)C)CC(C(=O)O)CC(=O)O"  
P8D  SMILES_CANONICAL  CACTVS                3.352  "C[C@H](N)[P](O)(=O)C[C@H](CC(O)=O)C(O)=O"  
P8D  SMILES            CACTVS                3.352  "C[CH](N)[P](O)(=O)C[CH](CC(O)=O)C(O)=O"  
P8D  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C[C@H](N)[P@@](=O)(C[C@H](CC(=O)O)C(=O)O)O"  
P8D  SMILES            "OpenEye OEToolkits"  1.7.0  "CC(N)P(=O)(CC(CC(=O)O)C(=O)O)O"  
P8D  InChI             InChI                 1.03   "InChI=1S/C7H14NO6P/c1-4(8)15(13,14)3-5(7(11)12)2-6(9)10/h4-5H,2-3,8H2,1H3,(H,9,10)(H,11,12)(H,13,14)/t4-,5+/m1/s1"  
P8D  InChIKey          InChI                 1.03   LWODXTSWCZWQHR-UHNVWZDZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P8D  "SYSTEMATIC NAME"  ACDLabs               11.02  "(2R)-2-{[(R)-[(1R)-1-aminoethyl](hydroxy)phosphoryl]methyl}butanedioic acid"  
P8D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(2R)-2-[[[(1R)-1-azanylethyl]-hydroxy-phosphoryl]methyl]butanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P8D  "Create component"   2009-10-23  RCSB  
P8D  "Modify descriptor"  2011-06-04  RCSB  
P8D  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     P8D
_pdbx_chem_comp_synonyms.name        "(2R)-2-{[(R)-[(1R)-1-aminoethyl](hydroxy)phosphoryl]methyl}butanedioic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
