data_P5D
#

_chem_comp.id                                   P5D
_chem_comp.name                                 "(2R)-2-{[(S)-[(1R)-1-amino-2-phenylethyl](hydroxy)phosphoryl]methyl}butanedioic acid"
_chem_comp.type                                 PEPTIDE-LIKE
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H18 N O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "L-PHE-D-ASP PHOSPHINATE PSEUDODIPEPTIDE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-05-18
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       315.259
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P5D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3S2M
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P5D  C1    C1    C  0  1  N  N  N  -25.032  32.132  -15.303  -3.125   1.486   0.147  C1    P5D   1  
P5D  N1    N1    N  0  1  N  N  N  -23.834  30.237  -16.376  -1.442   2.995   1.091  N1    P5D   2  
P5D  C2    C2    C  0  1  N  N  R  -24.423  30.733  -15.114  -1.821   1.583   0.943  C2    P5D   3  
P5D  P3    P3    P  0  1  N  N  N  -25.674  29.486  -14.664  -0.502   0.689   0.058  P3    P5D   4  
P5D  C4    C4    C  0  1  N  N  N  -26.264  29.825  -12.995   1.051   0.805   1.006  C4    P5D   5  
P5D  C5    C5    C  0  1  N  N  R  -27.802  29.983  -12.825   2.127  -0.047   0.329  C5    P5D   6  
P5D  C6    C6    C  0  1  N  N  N  -28.607  28.796  -13.399   2.620   0.656  -0.909  C6    P5D   7  
P5D  C7    C7    C  0  1  N  N  N  -28.071  30.301  -11.352   3.294  -0.257   1.296  C7    P5D   8  
P5D  C8    C8    C  0  1  N  N  N  -27.638  31.695  -10.903   4.296  -1.197   0.676  C8    P5D   9  
P5D  CG    CG    C  0  1  Y  N  N  -24.059  33.270  -15.219  -3.514   0.038  -0.005  CG    P5D  10  
P5D  CZ    CZ    C  0  1  Y  N  N  -22.260  35.391  -15.091  -4.227  -2.618  -0.284  CZ    P5D  11  
P5D  O31   O31   O  0  1  N  N  N  -24.982  28.154  -14.734  -0.292   1.345  -1.397  O31   P5D  12  
P5D  O32   O32   O  0  1  N  N  N  -26.843  29.528  -15.720  -0.883  -0.733  -0.091  O32   P5D  13  
P5D  O61   O61   O  0  1  N  N  N  -29.828  28.941  -13.465   3.571   0.090  -1.668  O61   P5D  14  
P5D  O62   O62   O  0  1  N  N  N  -27.984  27.769  -13.766   2.158   1.729  -1.218  O62   P5D  15  
P5D  O81   O81   O  0  1  N  N  N  -27.849  32.642  -11.683   4.097  -1.652  -0.425  O81   P5D  16  
P5D  O82   O82   O  0  1  N  N  N  -27.085  31.768   -9.798   5.410  -1.528   1.348  O82   P5D  17  
P5D  CD1   CD1   C  0  1  Y  N  N  -24.037  34.235  -16.219  -3.061  -0.688  -1.091  CD1   P5D  18  
P5D  CD2   CD2   C  0  1  Y  N  N  -23.168  33.373  -14.154  -4.318  -0.565   0.943  CD2   P5D  19  
P5D  CE1   CE1   C  0  1  Y  N  N  -23.142  35.297  -16.156  -3.418  -2.016  -1.230  CE1   P5D  20  
P5D  CE2   CE2   C  0  1  Y  N  N  -22.271  34.433  -14.088  -4.675  -1.893   0.804  CE2   P5D  21  
P5D  H1    H1    H  0  1  N  N  N  -25.783  32.277  -14.512  -3.914   2.021   0.676  H1    P5D  22  
P5D  H1A   H1A   H  0  1  N  N  N  -25.493  32.162  -16.301  -2.983   1.930  -0.838  H1A   P5D  23  
P5D  HN1   HN1   H  0  1  N  N  N  -23.445  29.328  -16.228  -1.305   3.429   0.191  HN1   P5D  24  
P5D  HN1A  HN1A  H  0  0  N  N  N  -24.545  30.185  -17.078  -2.128   3.498   1.634  HN1A  P5D  25  
P5D  H2    H2    H  0  1  N  N  N  -23.675  30.853  -14.316  -1.963   1.140   1.928  H2    P5D  26  
P5D  H4    H4    H  0  1  N  N  N  -25.951  28.982  -12.361   1.380   1.844   1.041  H4    P5D  27  
P5D  H4A   H4A   H  0  1  N  N  N  -25.802  30.769  -12.671   0.886   0.443   2.021  H4A   P5D  28  
P5D  H5    H5    H  0  1  N  N  N  -28.172  30.821  -13.434   1.704  -1.014   0.055  H5    P5D  29  
P5D  H7    H7    H  0  1  N  N  N  -29.155  30.218  -11.185   3.772   0.700   1.501  H7    P5D  30  
P5D  H7A   H7A   H  0  1  N  N  N  -27.518  29.568  -10.746   2.922  -0.685   2.227  H7A   P5D  31  
P5D  HZ    HZ    H  0  1  N  N  N  -21.562  36.213  -15.042  -4.505  -3.656  -0.394  HZ    P5D  32  
P5D  HO31  HO31  H  0  0  N  N  N  -25.395  27.617  -15.400  -0.040   2.278  -1.376  HO31  P5D  33  
P5D  HO61  HO61  H  0  0  N  N  N  -30.221  28.159  -13.835   3.855   0.579  -2.452  HO61  P5D  34  
P5D  HO82  HO82  H  0  0  N  N  N  -26.839  32.669   -9.625   6.023  -2.134   0.910  HO82  P5D  35  
P5D  HD1   HD1   H  0  1  N  N  N  -24.721  34.159  -17.052  -2.429  -0.218  -1.829  HD1   P5D  36  
P5D  HD2   HD2   H  0  1  N  N  N  -23.174  32.625  -13.375  -4.668   0.002   1.794  HD2   P5D  37  
P5D  HE1   HE1   H  0  1  N  N  N  -23.134  36.046  -16.934  -3.064  -2.584  -2.078  HE1   P5D  38  
P5D  HE2   HE2   H  0  1  N  N  N  -21.584  34.510  -13.258  -5.307  -2.363   1.543  HE2   P5D  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P5D  C1   CG    SING  N  N   1  
P5D  C1   C2    SING  N  N   2  
P5D  C1   H1    SING  N  N   3  
P5D  C1   H1A   SING  N  N   4  
P5D  N1   C2    SING  N  N   5  
P5D  N1   HN1   SING  N  N   6  
P5D  N1   HN1A  SING  N  N   7  
P5D  C2   P3    SING  N  N   8  
P5D  C2   H2    SING  N  N   9  
P5D  O32  P3    DOUB  N  N  10  
P5D  O31  P3    SING  N  N  11  
P5D  P3   C4    SING  N  N  12  
P5D  C4   C5    SING  N  N  13  
P5D  C4   H4    SING  N  N  14  
P5D  C4   H4A   SING  N  N  15  
P5D  C6   C5    SING  N  N  16  
P5D  C5   C7    SING  N  N  17  
P5D  C5   H5    SING  N  N  18  
P5D  O62  C6    DOUB  N  N  19  
P5D  O61  C6    SING  N  N  20  
P5D  C7   C8    SING  N  N  21  
P5D  C7   H7    SING  N  N  22  
P5D  C7   H7A   SING  N  N  23  
P5D  O81  C8    DOUB  N  N  24  
P5D  C8   O82   SING  N  N  25  
P5D  CD1  CG    DOUB  Y  N  26  
P5D  CG   CD2   SING  Y  N  27  
P5D  CE1  CZ    DOUB  Y  N  28  
P5D  CZ   CE2   SING  Y  N  29  
P5D  CZ   HZ    SING  N  N  30  
P5D  O31  HO31  SING  N  N  31  
P5D  O61  HO61  SING  N  N  32  
P5D  O82  HO82  SING  N  N  33  
P5D  CD1  CE1   SING  Y  N  34  
P5D  CD1  HD1   SING  N  N  35  
P5D  CD2  CE2   DOUB  Y  N  36  
P5D  CD2  HD2   SING  N  N  37  
P5D  CE1  HE1   SING  N  N  38  
P5D  CE2  HE2   SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P5D  SMILES            ACDLabs               12.01  "O=C(O)C(CC(=O)O)CP(=O)(O)C(N)Cc1ccccc1"  
P5D  SMILES_CANONICAL  CACTVS                3.370  "N[C@@H](Cc1ccccc1)[P](O)(=O)C[C@H](CC(O)=O)C(O)=O"  
P5D  SMILES            CACTVS                3.370  "N[CH](Cc1ccccc1)[P](O)(=O)C[CH](CC(O)=O)C(O)=O"  
P5D  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "c1ccc(cc1)C[C@H](N)P(=O)(C[C@H](CC(=O)O)C(=O)O)O"  
P5D  SMILES            "OpenEye OEToolkits"  1.7.2  "c1ccc(cc1)CC(N)P(=O)(CC(CC(=O)O)C(=O)O)O"  
P5D  InChI             InChI                 1.03   "InChI=1S/C13H18NO6P/c14-11(6-9-4-2-1-3-5-9)21(19,20)8-10(13(17)18)7-12(15)16/h1-5,10-11H,6-8,14H2,(H,15,16)(H,17,18)(H,19,20)/t10-,11+/m0/s1"  
P5D  InChIKey          InChI                 1.03   HUMGCALEJILOSC-WDEREUQCSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P5D  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R)-2-{[(S)-[(1R)-1-amino-2-phenylethyl](hydroxy)phosphoryl]methyl}butanedioic acid"  
P5D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.2  "(2R)-2-[[[(1R)-1-azanyl-2-phenyl-ethyl]-oxidanyl-phosphoryl]methyl]butanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P5D  "Create component"      2011-05-18  RCSB  
P5D  "Modify synonyms"       2011-05-27  RCSB  
P5D  "Modify aromatic_flag"  2011-06-04  RCSB  
P5D  "Modify descriptor"     2011-06-04  RCSB  
P5D  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     P5D
_pdbx_chem_comp_synonyms.name        "L-PHE-D-ASP PHOSPHINATE PSEUDODIPEPTIDE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
