data_P3D
#

_chem_comp.id                                   P3D
_chem_comp.name                                 "(4-{(E)-[(5-AMINOPENTYL)IMINO]METHYL}-5-HYDROXY-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H22 N3 O5 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PHOSPHORIC ACID MONO-{4-[(5-AMINO-PENTYLIMINO)-METHYL]-5-HYDROXY-6-METHYL-PYRIDIN-3-YLMETHYL} ESTER"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-05-16
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       331.305
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P3D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "Corina V3.40"
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P3D  OAE   OAE   O  0  1  N  N  N  68.318  76.948   8.705  -4.078  -2.747   1.417  OAE   P3D   1  
P3D  PAV   PAV   P  0  1  N  N  N  68.723  75.514   8.143  -4.090  -2.211  -0.101  PAV   P3D   2  
P3D  OAF   OAF   O  0  1  N  N  N  67.412  75.052   7.317  -3.350  -3.158  -0.964  OAF   P3D   3  
P3D  OAC   OAC   O  0  1  N  N  N  69.084  74.538   9.243  -5.611  -2.093  -0.616  OAC   P3D   4  
P3D  OAQ   OAQ   O  0  1  N  N  N  69.967  75.705   7.146  -3.388  -0.764  -0.165  OAQ   P3D   5  
P3D  CAN   CAN   C  0  1  N  N  N  70.673  74.519   6.776  -2.004  -0.557   0.128  CAN   P3D   6  
P3D  CAT   CAT   C  0  1  Y  N  N  71.899  74.947   5.963  -1.671   0.904  -0.026  CAT   P3D   7  
P3D  CAH   CAH   C  0  1  Y  N  N  71.799  74.624   4.614  -2.645   1.808  -0.399  CAH   P3D   8  
P3D  NAP   NAP   N  0  1  Y  N  N  72.760  74.910   3.764  -2.366   3.090  -0.537  NAP   P3D   9  
P3D  CAR   CAR   C  0  1  Y  N  N  73.887  75.554   4.161  -1.158   3.571  -0.329  CAR   P3D  10  
P3D  CAA   CAA   C  0  1  N  N  N  74.943  75.860   3.083  -0.905   5.047  -0.503  CAA   P3D  11  
P3D  CAS   CAS   C  0  1  Y  N  N  74.062  75.914   5.526  -0.116   2.737   0.050  CAS   P3D  12  
P3D  OAD   OAD   O  0  1  N  N  N  75.203  76.554   5.894   1.127   3.238   0.264  OAD   P3D  13  
P3D  CAU   CAU   C  0  1  Y  N  N  73.038  75.619   6.443  -0.371   1.365   0.213  CAU   P3D  14  
P3D  CAG   CAG   C  0  1  N  N  N  73.143  75.924   7.816   0.701   0.437   0.620  CAG   P3D  15  
P3D  NAO   NAO   N  0  1  N  N  N  73.764  77.001   8.335   1.895   0.883   0.836  NAO   P3D  16  
P3D  CAM   CAM   C  0  1  N  N  N  73.756  77.076   9.799   2.960  -0.039   1.240  CAM   P3D  17  
P3D  CAL   CAL   C  0  1  N  N  N  74.160  78.431  10.335   4.027  -0.097   0.146  CAL   P3D  18  
P3D  CAK   CAK   C  0  1  N  N  N  73.232  78.868  11.496   5.139  -1.060   0.568  CAK   P3D  19  
P3D  CAJ   CAJ   C  0  1  N  N  N  72.842  77.735  12.460   6.206  -1.117  -0.527  CAJ   P3D  20  
P3D  CAI   CAI   C  0  1  N  N  N  73.233  77.963  13.904   7.318  -2.080  -0.105  CAI   P3D  21  
P3D  NAB   NAB   N  0  1  N  N  N  74.354  78.916  14.057   8.342  -2.136  -1.156  NAB   P3D  22  
P3D  HOAE  HOAE  H  0  0  N  N  N  68.237  76.907   9.651  -4.546  -2.175   2.040  HOAE  P3D  23  
P3D  HOAC  HOAC  H  0  0  N  N  N  69.160  73.664   8.879  -6.097  -2.929  -0.604  HOAC  P3D  24  
P3D  HAN1  1HAN  H  0  0  N  N  N  70.988  73.970   7.676  -1.799  -0.871   1.151  HAN1  P3D  25  
P3D  HAN2  2HAN  H  0  0  N  N  N  70.028  73.855   6.182  -1.395  -1.143  -0.561  HAN2  P3D  26  
P3D  HAH   HAH   H  0  1  N  N  N  70.910  74.126   4.256  -3.651   1.460  -0.581  HAH   P3D  27  
P3D  HAA1  1HAA  H  0  0  N  N  N  74.454  75.933   2.100  -1.077   5.559   0.443  HAA1  P3D  28  
P3D  HAA2  2HAA  H  0  0  N  N  N  75.440  76.813   3.317   0.127   5.203  -0.819  HAA2  P3D  29  
P3D  HAA3  3HAA  H  0  0  N  N  N  75.690  75.052   3.062  -1.581   5.444  -1.260  HAA3  P3D  30  
P3D  HOAD  HOAD  H  0  0  N  N  N  75.744  76.703   5.128   1.286   3.518   1.176  HOAD  P3D  31  
P3D  HAG1  1HAG  H  0  0  N  N  N  72.686  75.235   8.511   0.488  -0.616   0.738  HAG1  P3D  32  
P3D  HAM1  1HAM  H  0  0  N  N  N  72.735  76.860  10.148   3.410   0.310   2.169  HAM1  P3D  33  
P3D  HAM2  2HAM  H  0  0  N  N  N  74.493  76.347  10.167   2.541  -1.034   1.392  HAM2  P3D  34  
P3D  HAL1  1HAL  H  0  0  N  N  N  75.194  78.375  10.706   3.576  -0.447  -0.783  HAL1  P3D  35  
P3D  HAL2  2HAL  H  0  0  N  N  N  74.078  79.169   9.523   4.446   0.898  -0.006  HAL2  P3D  36  
P3D  HAK1  1HAK  H  0  0  N  N  N  73.759  79.639  12.077   5.589  -0.710   1.496  HAK1  P3D  37  
P3D  HAK2  2HAK  H  0  0  N  N  N  72.299  79.228  11.037   4.720  -2.055   0.719  HAK2  P3D  38  
P3D  HAJ1  1HAJ  H  0  0  N  N  N  71.748  77.627  12.423   5.755  -1.467  -1.456  HAJ1  P3D  39  
P3D  HAJ2  2HAJ  H  0  0  N  N  N  73.389  76.841  12.127   6.625  -0.123  -0.679  HAJ2  P3D  40  
P3D  HAI1  1HAI  H  0  0  N  N  N  72.361  78.367  14.438   7.768  -1.731   0.824  HAI1  P3D  41  
P3D  HAI2  2HAI  H  0  0  N  N  N  73.562  76.997  14.314   6.899  -3.075   0.046  HAI2  P3D  42  
P3D  HAB1  1HAB  H  0  0  N  N  N  74.734  79.131  13.158   8.701  -1.215  -1.361  HAB1  P3D  43  
P3D  HAB2  2HAB  H  0  0  N  N  N  74.022  79.755  14.487   9.088  -2.766  -0.901  HAB2  P3D  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P3D  OAE  PAV   SING  N  N   1  
P3D  OAE  HOAE  SING  N  N   2  
P3D  PAV  OAQ   SING  N  N   3  
P3D  PAV  OAF   DOUB  N  N   4  
P3D  PAV  OAC   SING  N  N   5  
P3D  OAC  HOAC  SING  N  N   6  
P3D  OAQ  CAN   SING  N  N   7  
P3D  CAN  CAT   SING  N  N   8  
P3D  CAN  HAN1  SING  N  N   9  
P3D  CAN  HAN2  SING  N  N  10  
P3D  CAT  CAH   DOUB  Y  N  11  
P3D  CAT  CAU   SING  Y  N  12  
P3D  CAH  NAP   SING  Y  N  13  
P3D  CAH  HAH   SING  N  N  14  
P3D  NAP  CAR   DOUB  Y  N  15  
P3D  CAR  CAA   SING  N  N  16  
P3D  CAR  CAS   SING  Y  N  17  
P3D  CAA  HAA1  SING  N  N  18  
P3D  CAA  HAA2  SING  N  N  19  
P3D  CAA  HAA3  SING  N  N  20  
P3D  CAS  OAD   SING  N  N  21  
P3D  CAS  CAU   DOUB  Y  N  22  
P3D  OAD  HOAD  SING  N  N  23  
P3D  CAU  CAG   SING  N  N  24  
P3D  CAG  NAO   DOUB  N  N  25  
P3D  CAG  HAG1  SING  N  N  26  
P3D  NAO  CAM   SING  N  N  27  
P3D  CAM  CAL   SING  N  N  28  
P3D  CAM  HAM1  SING  N  N  29  
P3D  CAM  HAM2  SING  N  N  30  
P3D  CAL  CAK   SING  N  N  31  
P3D  CAL  HAL1  SING  N  N  32  
P3D  CAL  HAL2  SING  N  N  33  
P3D  CAK  CAJ   SING  N  N  34  
P3D  CAK  HAK1  SING  N  N  35  
P3D  CAK  HAK2  SING  N  N  36  
P3D  CAJ  CAI   SING  N  N  37  
P3D  CAJ  HAJ1  SING  N  N  38  
P3D  CAJ  HAJ2  SING  N  N  39  
P3D  CAI  NAB   SING  N  N  40  
P3D  CAI  HAI1  SING  N  N  41  
P3D  CAI  HAI2  SING  N  N  42  
P3D  NAB  HAB1  SING  N  N  43  
P3D  NAB  HAB2  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P3D  SMILES            ACDLabs               10.04  "O=P(O)(O)OCc1cnc(c(O)c1/C=N/CCCCCN)C"  
P3D  SMILES_CANONICAL  CACTVS                3.341  "Cc1ncc(CO[P](O)(O)=O)c(C=NCCCCCN)c1O"  
P3D  SMILES            CACTVS                3.341  "Cc1ncc(CO[P](O)(O)=O)c(C=NCCCCCN)c1O"  
P3D  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1c(c(c(cn1)COP(=O)(O)O)\C=N\CCCCCN)O"  
P3D  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1c(c(c(cn1)COP(=O)(O)O)C=NCCCCCN)O"  
P3D  InChI             InChI                 1.03   "InChI=1S/C13H22N3O5P/c1-10-13(17)12(8-15-6-4-2-3-5-14)11(7-16-10)9-21-22(18,19)20/h7-8,17H,2-6,9,14H2,1H3,(H2,18,19,20)/b15-8+"  
P3D  InChIKey          InChI                 1.03   NPYALNYUWCUSTP-OVCLIPMQSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P3D  "SYSTEMATIC NAME"  ACDLabs               10.04  "(4-{(E)-[(5-aminopentyl)imino]methyl}-5-hydroxy-6-methylpyridin-3-yl)methyl dihydrogen phosphate"  
P3D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[4-[(E)-5-aminopentyliminomethyl]-5-hydroxy-6-methyl-pyridin-3-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P3D  "Create component"   2007-05-16  RCSB  
P3D  "Modify descriptor"  2011-06-04  RCSB  
P3D  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     P3D
_pdbx_chem_comp_synonyms.name        "PHOSPHORIC ACID MONO-{4-[(5-AMINO-PENTYLIMINO)-METHYL]-5-HYDROXY-6-METHYL-PYRIDIN-3-YLMETHYL} ESTER"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
