data_P0D
# 
_chem_comp.id                                    P0D 
_chem_comp.name                                  "(2S)-3-[(S)-[(1R)-1-aminoethyl](phosphonooxy)phosphoryl]-2-benzylpropanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H19 N O7 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-01-12 
_chem_comp.pdbx_modified_date                    2012-04-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        351.229 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     P0D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3VMM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
P0D O2    O2    O 0 1 N N N -0.471 -49.900 -9.405  2.003  -0.373 -1.992 O2    P0D 1  
P0D C     C     C 0 1 N N N 0.256  -48.878 -9.215  1.578  -1.196 -1.021 C     P0D 2  
P0D O1    O1    O 0 1 N N N 1.345  -48.695 -9.818  1.510  -2.386 -1.223 O1    P0D 3  
P0D "C2'" "C2'" C 0 1 N N S -0.168 -47.825 -8.226  1.185  -0.637 0.322  "C2'" P0D 4  
P0D "C1'" "C1'" C 0 1 N N N -1.621 -47.427 -8.478  -0.042 -1.385 0.847  "C1'" P0D 5  
P0D P1    P1    P 0 1 N N S -1.801 -46.061 -9.661  -1.526 -0.824 -0.051 P1    P0D 6  
P0D O1P   O1P   O 0 1 N N N -1.242 -46.463 -10.964 -1.328 -1.024 -1.504 O1P   P0D 7  
P0D C2    C2    C 0 1 N N N -4.184 -46.744 -10.783 -3.177 -1.580 2.005  C2    P0D 8  
P0D C1    C1    C 0 1 N N R -3.571 -45.701 -9.850  -2.972 -1.786 0.503  C1    P0D 9  
P0D N1    N1    N 0 1 N N N -3.784 -44.369 -10.395 -2.745 -3.212 0.231  N1    P0D 10 
P0D O2P   O2P   O 0 1 N N N -0.994 -44.739 -9.149  -1.775 0.738  0.247  O2P   P0D 11 
P0D P2    P2    P 0 1 N N N -1.498 -43.813 -7.926  -2.885 1.804  -0.227 P2    P0D 12 
P0D O4P   O4P   O 0 1 N N N -1.983 -44.791 -6.892  -4.221 1.613  0.649  O4P   P0D 13 
P0D O3P   O3P   O 0 1 N N N -0.321 -42.971 -7.446  -2.317 3.297  -0.021 O3P   P0D 14 
P0D O5P   O5P   O 0 1 N N N -2.593 -42.999 -8.573  -3.197 1.588  -1.657 O5P   P0D 15 
P0D "C3'" "C3'" C 0 1 N N N -0.036 -48.386 -6.815  2.345  -0.808 1.305  "C3'" P0D 16 
P0D C31   C31   C 0 1 Y N N 1.252  -49.102 -6.454  3.515  0.025  0.850  C31   P0D 17 
P0D C33   C33   C 0 1 Y N N 2.483  -48.454 -6.545  4.519  -0.549 0.093  C33   P0D 18 
P0D C35   C35   C 0 1 Y N N 3.637  -49.023 -6.027  5.593  0.215  -0.324 C35   P0D 19 
P0D C36   C36   C 0 1 Y N N 3.578  -50.262 -5.401  5.662  1.554  0.015  C36   P0D 20 
P0D C34   C34   C 0 1 Y N N 2.358  -50.921 -5.296  4.658  2.128  0.771  C34   P0D 21 
P0D C32   C32   C 0 1 Y N N 1.205  -50.341 -5.811  3.582  1.365  1.185  C32   P0D 22 
P0D H1    H1    H 0 1 N N N -0.061 -50.465 -10.049 2.244  -0.778 -2.836 H1    P0D 23 
P0D H2    H2    H 0 1 N N N 0.476  -46.939 -8.329  0.948  0.422  0.220  H2    P0D 24 
P0D H3    H3    H 0 1 N N N -2.069 -47.121 -7.521  0.092  -2.456 0.693  H3    P0D 25 
P0D H4    H4    H 0 1 N N N -2.159 -48.302 -8.872  -0.164 -1.183 1.911  H4    P0D 26 
P0D H5    H5    H 0 1 N N N -4.021 -47.749 -10.368 -3.345 -0.522 2.207  H5    P0D 27 
P0D H6    H6    H 0 1 N N N -5.264 -46.559 -10.881 -4.041 -2.155 2.337  H6    P0D 28 
P0D H7    H7    H 0 1 N N N -3.709 -46.675 -11.773 -2.289 -1.916 2.542  H7    P0D 29 
P0D H8    H8    H 0 1 N N N -4.017 -45.789 -8.848  -3.859 -1.451 -0.034 H8    P0D 30 
P0D H9    H9    H 0 1 N N N -3.382 -43.689 -9.782  -1.927 -3.547 0.718  H9    P0D 31 
P0D H10   H10   H 0 1 N N N -3.352 -44.304 -11.294 -3.558 -3.760 0.470  H10   P0D 32 
P0D H12   H12   H 0 1 N N N -2.928 -44.731 -6.817  -4.091 1.740  1.599  H12   P0D 33 
P0D H13   H13   H 0 1 N N N -0.485 -42.056 -7.642  -2.934 3.993  -0.287 H13   P0D 34 
P0D H14   H14   H 0 1 N N N -0.150 -47.545 -6.116  2.031  -0.483 2.297  H14   P0D 35 
P0D H15   H15   H 0 1 N N N -0.860 -49.100 -6.668  2.638  -1.857 1.342  H15   P0D 36 
P0D H16   H16   H 0 1 N N N 2.539  -47.490 -7.028  4.465  -1.594 -0.172 H16   P0D 37 
P0D H17   H17   H 0 1 N N N 4.580  -48.504 -6.110  6.378  -0.233 -0.915 H17   P0D 38 
P0D H18   H18   H 0 1 N N N 4.474  -50.711 -4.998  6.502  2.150  -0.311 H18   P0D 39 
P0D H19   H19   H 0 1 N N N 2.306  -51.886 -4.813  4.712  3.173  1.037  H19   P0D 40 
P0D H20   H20   H 0 1 N N N 0.260  -50.855 -5.713  2.796  1.814  1.773  H20   P0D 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
P0D O1P   P1    DOUB N N 1  
P0D C2    C1    SING N N 2  
P0D N1    C1    SING N N 3  
P0D C1    P1    SING N N 4  
P0D O1    C     DOUB N N 5  
P0D P1    O2P   SING N N 6  
P0D P1    "C1'" SING N N 7  
P0D O2    C     SING N N 8  
P0D C     "C2'" SING N N 9  
P0D O2P   P2    SING N N 10 
P0D O5P   P2    DOUB N N 11 
P0D "C1'" "C2'" SING N N 12 
P0D "C2'" "C3'" SING N N 13 
P0D P2    O3P   SING N N 14 
P0D P2    O4P   SING N N 15 
P0D "C3'" C31   SING N N 16 
P0D C33   C31   DOUB Y N 17 
P0D C33   C35   SING Y N 18 
P0D C31   C32   SING Y N 19 
P0D C35   C36   DOUB Y N 20 
P0D C32   C34   DOUB Y N 21 
P0D C36   C34   SING Y N 22 
P0D O2    H1    SING N N 23 
P0D "C2'" H2    SING N N 24 
P0D "C1'" H3    SING N N 25 
P0D "C1'" H4    SING N N 26 
P0D C2    H5    SING N N 27 
P0D C2    H6    SING N N 28 
P0D C2    H7    SING N N 29 
P0D C1    H8    SING N N 30 
P0D N1    H9    SING N N 31 
P0D N1    H10   SING N N 32 
P0D O4P   H12   SING N N 33 
P0D O3P   H13   SING N N 34 
P0D "C3'" H14   SING N N 35 
P0D "C3'" H15   SING N N 36 
P0D C33   H16   SING N N 37 
P0D C35   H17   SING N N 38 
P0D C36   H18   SING N N 39 
P0D C34   H19   SING N N 40 
P0D C32   H20   SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
P0D SMILES           ACDLabs              12.01 "O=C(O)C(CP(=O)(OP(=O)(O)O)C(N)C)Cc1ccccc1"                                                                                                          
P0D InChI            InChI                1.03  "InChI=1S/C12H19NO7P2/c1-9(13)21(16,20-22(17,18)19)8-11(12(14)15)7-10-5-3-2-4-6-10/h2-6,9,11H,7-8,13H2,1H3,(H,14,15)(H2,17,18,19)/t9-,11-,21+/m1/s1" 
P0D InChIKey         InChI                1.03  KXASHFLSUHEZCK-UODZXCQVSA-N                                                                                                                          
P0D SMILES_CANONICAL CACTVS               3.370 "C[C@H](N)[P@](=O)(C[C@@H](Cc1ccccc1)C(O)=O)O[P](O)(O)=O"                                                                                            
P0D SMILES           CACTVS               3.370 "C[CH](N)[P](=O)(C[CH](Cc1ccccc1)C(O)=O)O[P](O)(O)=O"                                                                                                
P0D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](N)[P@](=O)(C[C@@H](Cc1ccccc1)C(=O)O)OP(=O)(O)O"                                                                                              
P0D SMILES           "OpenEye OEToolkits" 1.7.6 "CC(N)P(=O)(CC(Cc1ccccc1)C(=O)O)OP(=O)(O)O"                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
P0D "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-3-[(S)-[(1R)-1-aminoethyl](phosphonooxy)phosphoryl]-2-benzylpropanoic acid"       
P0D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[[[(1R)-1-azanylethyl]-phosphonooxy-phosphoryl]methyl]-3-phenyl-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
P0D "Create component" 2012-01-12 PDBJ 
# 
