data_OTD
#

_chem_comp.id                                   OTD
_chem_comp.name                                 "2-OXO-1,2,3,6-TETRAHYDROPYRIMIDINE-4,6-DICARBOXYLIC ACID"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C6 H6 N2 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        HDDP
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-03-01
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       186.122
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    OTD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OTD  N1    N1    N  0  1  N  N  N  26.333  38.861  73.332   3.747  -3.108   0.237  N1    OTD   1  
OTD  N3    N3    N  0  1  N  N  N  24.763  40.360  72.264   1.592  -2.820   1.125  N3    OTD   2  
OTD  C4    C4    C  0  1  N  N  N  25.591  41.471  72.501   1.411  -1.672   0.401  C4    OTD   3  
OTD  C5    C5    C  0  1  N  N  N  26.789  41.349  73.163   2.338  -1.229  -0.455  C5    OTD   4  
OTD  C6    C6    C  0  1  N  N  R  27.190  39.963  73.713   3.606  -1.985  -0.676  C6    OTD   5  
OTD  O61   O61   O  0  1  N  N  N  28.989  38.648  72.876   3.071  -3.652  -2.338  O61   OTD   6  
OTD  C61   C61   C  0  1  N  N  N  28.651  39.649  73.542   3.557  -2.567  -2.052  C61   OTD   7  
OTD  O62   O62   O  0  1  N  N  N  29.368  40.421  74.149   4.129  -1.727  -2.948  O62   OTD   8  
OTD  C41   C41   C  0  1  N  N  N  25.128  42.819  72.026   0.167  -0.923   0.572  C41   OTD   9  
OTD  O42   O42   O  0  1  N  N  N  25.846  43.834  72.245  -0.619  -1.544   1.477  O42   OTD  10  
OTD  O41   O41   O  0  1  N  N  N  24.021  42.785  71.430  -0.107   0.108  -0.019  O41   OTD  11  
OTD  C2    C2    C  0  1  N  N  N  25.132  39.069  72.679   2.753  -3.581   1.083  C2    OTD  12  
OTD  O2    O2    O  0  1  N  N  N  24.437  38.075  72.469   2.899  -4.596   1.767  O2    OTD  13  
OTD  HN1   HN1   H  0  1  N  N  N  26.616  37.926  73.546   4.644  -3.584   0.258  HN1   OTD  14  
OTD  HN3   HN3   H  0  1  N  N  N  23.892  40.491  71.790   0.844  -3.117   1.744  HN3   OTD  15  
OTD  H5    H5    H  0  1  N  N  N  27.436  42.204  73.296   2.186  -0.314  -1.020  H5    OTD  16  
OTD  H6    H6    H  0  1  N  N  N  27.014  40.070  74.794   4.484  -1.343  -0.573  H6    OTD  17  
OTD  HO62  HO62  H  0  0  N  N  N  30.275  40.156  74.051   4.108  -2.093  -3.858  HO62  OTD  18  
OTD  HO42  HO42  H  0  0  N  N  N  25.423  44.605  71.885  -1.465  -1.069   1.619  HO42  OTD  19  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OTD  N1   C2    SING  N  N   1  
OTD  N1   C6    SING  N  N   2  
OTD  N1   HN1   SING  N  N   3  
OTD  N3   C4    SING  N  N   4  
OTD  N3   C2    SING  N  N   5  
OTD  N3   HN3   SING  N  N   6  
OTD  C4   C41   SING  N  N   7  
OTD  C4   C5    DOUB  N  N   8  
OTD  C5   C6    SING  N  N   9  
OTD  C5   H5    SING  N  N  10  
OTD  C6   C61   SING  N  N  11  
OTD  C6   H6    SING  N  N  12  
OTD  O61  C61   DOUB  N  N  13  
OTD  C61  O62   SING  N  N  14  
OTD  O62  HO62  SING  N  N  15  
OTD  C41  O41   DOUB  N  N  16  
OTD  C41  O42   SING  N  N  17  
OTD  O42  HO42  SING  N  N  18  
OTD  C2   O2    DOUB  N  N  19  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OTD  SMILES            ACDLabs               10.04  "O=C(O)C1C=C(C(=O)O)NC(=O)N1"  
OTD  SMILES_CANONICAL  CACTVS                3.341  "OC(=O)[C@@H]1NC(=O)NC(=C1)C(O)=O"  
OTD  SMILES            CACTVS                3.341  "OC(=O)[CH]1NC(=O)NC(=C1)C(O)=O"  
OTD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=C(NC(=O)N[C@H]1C(=O)O)C(=O)O"  
OTD  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=C(NC(=O)NC1C(=O)O)C(=O)O"  
OTD  InChI             InChI                 1.03   "InChI=1S/C6H6N2O5/c9-4(10)2-1-3(5(11)12)8-6(13)7-2/h1-2H,(H,9,10)(H,11,12)(H2,7,8,13)/t2-/m1/s1"  
OTD  InChIKey          InChI                 1.03   WVCOMWPLPGATRR-UWTATZPHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OTD  "SYSTEMATIC NAME"  ACDLabs               10.04  "(4R)-2-oxo-1,2,3,4-tetrahydropyrimidine-4,6-dicarboxylic acid"  
OTD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(4R)-2-oxo-3,4-dihydro-1H-pyrimidine-4,6-dicarboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OTD  "Create component"   2007-03-01  RCSB  
OTD  "Modify descriptor"  2011-06-04  RCSB  
OTD  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     OTD
_pdbx_chem_comp_synonyms.name        HDDP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
