data_ORD
# 
_chem_comp.id                                    ORD 
_chem_comp.name                                  D-ORNITHINE 
_chem_comp.type                                  "D-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C5 H12 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-09-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        132.161 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ORD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1DSR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ORD N   N   N 0 1 N N N Y Y N 21.260 24.134 16.013 -0.758 1.774  0.274  N   ORD 1  
ORD CA  CA  C 0 1 N N R Y N N 22.332 23.116 15.912 -0.782 0.321  0.488  CA  ORD 2  
ORD CB  CB  C 0 1 N N N N N N 23.067 23.216 14.545 0.368  -0.327 -0.286 CB  ORD 3  
ORD CG  CG  C 0 1 N N N N N N 23.847 24.521 14.261 1.703  0.146  0.294  CG  ORD 4  
ORD CD  CD  C 0 1 N N N N N N 24.468 24.535 12.855 2.853  -0.502 -0.479 CD  ORD 5  
ORD NE  NE  N 0 1 N N N N N N 25.091 25.853 12.605 4.135  -0.049 0.078  NE  ORD 6  
ORD O   O   O 0 1 N N N Y N Y 20.797 21.414 15.164 -2.762 0.392  -0.787 O   ORD 7  
ORD OXT OXT O 0 1 N Y N Y N Y 22.101 20.852 16.914 -2.518 -1.434 0.435  OXT ORD 8  
ORD C   C   C 0 1 N N N Y N Y 21.664 21.719 15.988 -2.093 -0.237 -0.002 C   ORD 9  
ORD H   H   H 0 1 N N N Y Y N 21.107 24.363 16.974 -0.860 1.997  -0.705 H   ORD 10 
ORD H2  H2  H 0 1 N Y N Y Y N 21.533 24.956 15.514 -1.468 2.232  0.825  H2  ORD 11 
ORD HA  HA  H 0 1 N N N Y N N 23.058 23.275 16.723 -0.670 0.108  1.551  HA  ORD 12 
ORD HB2 HB2 H 0 1 N N N N N N 23.794 22.392 14.509 0.299  -1.411 -0.200 HB2 ORD 13 
ORD HB3 HB3 H 0 1 N N N N N N 22.272 23.182 13.785 0.307  -0.041 -1.336 HB3 ORD 14 
ORD HG2 HG2 H 0 1 N N N N N N 23.152 25.369 14.345 1.773  1.230  0.208  HG2 ORD 15 
ORD HG3 HG3 H 0 1 N N N N N N 24.665 24.592 14.993 1.765  -0.140 1.344  HG3 ORD 16 
ORD HD2 HD2 H 0 1 N N N N N N 25.233 23.748 12.784 2.783  -1.587 -0.393 HD2 ORD 17 
ORD HD3 HD3 H 0 1 N N N N N N 23.684 24.352 12.106 2.792  -0.217 -1.529 HD3 ORD 18 
ORD HE1 HE1 H 0 1 N N N N N N 25.232 26.326 13.475 4.189  -0.245 1.066  HE1 ORD 19 
ORD HE2 HE2 H 0 1 N N N N N N 25.972 25.724 12.150 4.911  -0.463 -0.416 HE2 ORD 20 
ORD HXT HXT H 0 1 N Y N Y N Y 21.645 20.025 16.814 -3.365 -1.750 0.093  HXT ORD 21 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ORD N   CA  SING N N 1  
ORD CA  CB  SING N N 2  
ORD CA  C   SING N N 3  
ORD CB  CG  SING N N 4  
ORD CG  CD  SING N N 5  
ORD CD  NE  SING N N 6  
ORD C   O   DOUB N N 7  
ORD C   OXT SING N N 8  
ORD N   H   SING N N 9  
ORD N   H2  SING N N 10 
ORD CA  HA  SING N N 11 
ORD CB  HB2 SING N N 12 
ORD CB  HB3 SING N N 13 
ORD CG  HG2 SING N N 14 
ORD CG  HG3 SING N N 15 
ORD CD  HD2 SING N N 16 
ORD CD  HD3 SING N N 17 
ORD NE  HE1 SING N N 18 
ORD NE  HE2 SING N N 19 
ORD OXT HXT SING N N 20 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ORD SMILES           ACDLabs              10.04 "O=C(O)C(N)CCCN"                                                        
ORD SMILES_CANONICAL CACTVS               3.352 "NCCC[C@@H](N)C(O)=O"                                                   
ORD SMILES           CACTVS               3.352 "NCCC[CH](N)C(O)=O"                                                     
ORD SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C(C[C@H](C(=O)O)N)CN"                                                  
ORD SMILES           "OpenEye OEToolkits" 1.6.1 "C(CC(C(=O)O)N)CN"                                                      
ORD InChI            InChI                1.03  "InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m1/s1" 
ORD InChIKey         InChI                1.03  AHLPHDHHMVZTML-SCSAIBSYSA-N                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ORD "SYSTEMATIC NAME" ACDLabs              10.04 D-ornithine                      
ORD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R)-2,5-diaminopentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ORD "Create component"  2010-09-08 EBI  
ORD "Modify descriptor" 2011-06-04 RCSB 
ORD "Modify backbone"   2023-11-03 PDBE 
ORD "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            ORD 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               Ornithine 
_pdbx_chem_comp_pcm.category                           "Named protein modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
