data_OKD
# 
_chem_comp.id                                    OKD 
_chem_comp.name                                  "N-({(1S)-1-CARBOXY-5-[4-(2,5,8,11,14-PENTAOXAPENTADEC-1-YL)-1H-1,2,3-TRIAZOL-1-YL]PENTYL}CARBAMOYL)-L-GLUTAMIC ACID" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H41 N5 O12" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-05-14 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        591.609 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     OKD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2XEJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
OKD CAA  CAA  C 0 1 N N N 28.536 62.246 40.769 14.029  -3.014 0.868  CAA  OKD 1  
OKD OBC  OBC  O 0 1 N N N 29.031 61.888 39.461 12.753  -3.257 0.272  OBC  OKD 2  
OKD CAL  CAL  C 0 1 N N N 28.560 60.567 39.097 12.425  -2.354 -0.786 CAL  OKD 3  
OKD CAM  CAM  C 0 1 N N N 29.712 59.738 38.507 11.046  -2.705 -1.347 CAM  OKD 4  
OKD OBD  OBD  O 0 1 N N N 29.325 58.353 38.302 10.053  -2.487 -0.343 OBD  OKD 5  
OKD CAN  CAN  C 0 1 N N N 29.996 57.464 39.229 8.722   -2.787 -0.766 CAN  OKD 6  
OKD CAO  CAO  C 0 1 N N N 29.111 57.017 40.413 7.748   -2.518 0.383  CAO  OKD 7  
OKD OBE  OBE  O 0 1 N N N 27.664 57.030 40.168 7.743   -1.122 0.686  OBE  OKD 8  
OKD CAP  CAP  C 0 1 N N N 27.175 55.677 40.009 6.861   -0.761 1.752  CAP  OKD 9  
OKD CAQ  CAQ  C 0 1 N N N 26.595 55.078 41.295 6.937   0.748  1.988  CAQ  OKD 10 
OKD OBF  OBF  O 0 1 N N N 26.517 53.657 41.079 6.441   1.436  0.838  OBF  OKD 11 
OKD CAR  CAR  C 0 1 N N N 25.277 53.205 41.772 6.468   2.860  0.956  CAR  OKD 12 
OKD CAS  CAS  C 0 1 N N N 25.613 51.730 41.426 5.918   3.489  -0.326 CAS  OKD 13 
OKD OBG  OBG  O 0 1 N N N 25.283 51.283 40.031 4.537   3.147  -0.468 OBG  OKD 14 
OKD CAX  CAX  C 0 1 N N N 25.946 49.975 39.596 3.923   3.687  -1.640 CAX  OKD 15 
OKD CBL  CBL  C 0 1 Y N N 25.511 48.657 39.951 2.477   3.267  -1.689 CBL  OKD 16 
OKD CAI  CAI  C 0 1 Y N N 25.076 48.300 41.166 1.826   2.499  -0.784 CAI  OKD 17 
OKD NAY  NAY  N 0 1 Y N N 25.463 47.554 39.175 1.582   3.584  -2.632 NAY  OKD 18 
OKD NAZ  NAZ  N 0 1 Y N N 25.030 46.610 39.878 0.454   3.044  -2.333 NAZ  OKD 19 
OKD NBO  NBO  N 0 1 Y N N 24.778 47.003 41.038 0.555   2.384  -1.233 NBO  OKD 20 
OKD CAW  CAW  C 0 1 N N N 24.273 46.194 42.192 -0.523  1.639  -0.577 CAW  OKD 21 
OKD CAK  CAK  C 0 1 N N N 22.850 45.719 41.993 -1.719  2.565  -0.350 CAK  OKD 22 
OKD CAJ  CAJ  C 0 1 N N N 22.233 45.274 43.360 -2.844  1.787  0.336  CAJ  OKD 23 
OKD CB   CB   C 0 1 N N N 20.729 45.643 43.301 -4.040  2.714  0.563  CB   OKD 24 
OKD CA   CA   C 0 1 N N S 19.866 44.950 44.380 -5.165  1.936  1.248  CA   OKD 25 
OKD C    C    C 0 1 N N N 20.124 45.653 45.732 -6.294  2.876  1.582  C    OKD 26 
OKD OXT  OXT  O 0 1 N Y N 20.780 44.982 46.561 -6.079  3.920  2.398  OXT  OKD 27 
OKD O    O    O 0 1 N N N 19.535 46.726 45.951 -7.394  2.690  1.117  O    OKD 28 
OKD N    N    N 0 1 N N N 18.511 45.228 43.904 -5.653  0.888  0.347  N    OKD 29 
OKD CBK  CBK  C 0 1 N N N 17.882 44.480 43.019 -6.247  -0.212 0.852  CBK  OKD 30 
OKD OAE  OAE  O 0 1 N N N 18.354 43.441 42.570 -6.378  -0.334 2.055  OAE  OKD 31 
OKD NBB  NBB  N 0 1 N N N 16.627 44.818 42.721 -6.695  -1.176 0.024  NBB  OKD 32 
OKD CBN  CBN  C 0 1 N N S 16.008 44.238 41.547 -7.340  -2.371 0.573  CBN  OKD 33 
OKD CBJ  CBJ  C 0 1 N N N 16.994 44.460 40.368 -6.288  -3.383 0.947  CBJ  OKD 34 
OKD OAH  OAH  O 0 1 N N N 16.850 43.686 39.398 -5.120  -3.132 0.773  OAH  OKD 35 
OKD OAD  OAD  O 0 1 N N N 17.888 45.362 40.430 -6.650  -4.563 1.473  OAD  OKD 36 
OKD CAV  CAV  C 0 1 N N N 14.691 44.980 41.124 -8.276  -2.973 -0.477 CAV  OKD 37 
OKD CAT  CAT  C 0 1 N N N 14.882 46.538 41.142 -9.416  -1.993 -0.766 CAT  OKD 38 
OKD CBH  CBH  C 0 1 N N N 13.756 47.339 40.428 -10.338 -2.586 -1.801 CBH  OKD 39 
OKD OAF  OAF  O 0 1 N N N 13.705 48.565 40.657 -10.107 -3.679 -2.260 OAF  OKD 40 
OKD OAB  OAB  O 0 1 N N N 12.943 46.719 39.706 -11.415 -1.899 -2.211 OAB  OKD 41 
OKD HAA1 HAA1 H 0 0 N N N 29.380 62.337 41.469 14.049  -2.008 1.286  HAA1 OKD 42 
OKD HAA2 HAA2 H 0 0 N N N 28.004 63.207 40.709 14.203  -3.741 1.662  HAA2 OKD 43 
OKD HAA3 HAA3 H 0 0 N N N 27.847 61.467 41.126 14.807  -3.109 0.112  HAA3 OKD 44 
OKD HAL1 HAL1 H 0 0 N N N 28.171 60.061 39.993 12.412  -1.334 -0.402 HAL1 OKD 45 
OKD HAL2 HAL2 H 0 0 N N N 27.764 60.664 38.344 13.170  -2.435 -1.577 HAL2 OKD 46 
OKD HAM1 HAM1 H 0 0 N N N 30.000 60.172 37.538 10.833  -2.075 -2.211 HAM1 OKD 47 
OKD HAM2 HAM2 H 0 0 N N N 30.552 59.760 39.217 11.032  -3.752 -1.650 HAM2 OKD 48 
OKD HAN1 HAN1 H 0 0 N N N 30.306 56.565 38.676 8.461   -2.158 -1.618 HAN1 OKD 49 
OKD HAN2 HAN2 H 0 0 N N N 30.846 58.020 39.652 8.660   -3.835 -1.057 HAN2 OKD 50 
OKD HAO1 HAO1 H 0 0 N N N 29.393 55.984 40.664 6.745   -2.830 0.090  HAO1 OKD 51 
OKD HAO2 HAO2 H 0 0 N N N 29.289 57.747 41.217 8.061   -3.080 1.263  HAO2 OKD 52 
OKD HAP1 HAP1 H 0 0 N N N 26.380 55.688 39.248 5.840   -1.037 1.487  HAP1 OKD 53 
OKD HAP2 HAP2 H 0 0 N N N 28.034 55.054 39.719 7.156   -1.287 2.660  HAP2 OKD 54 
OKD HAQ1 HAQ1 H 0 0 N N N 27.245 55.303 42.153 6.334   1.011  2.857  HAQ1 OKD 55 
OKD HAQ2 HAQ2 H 0 0 N N N 25.605 55.502 41.521 7.973   1.037  2.165  HAQ2 OKD 56 
OKD HAR1 HAR1 H 0 0 N N N 25.195 53.451 42.841 5.855   3.166  1.804  HAR1 OKD 57 
OKD HAR2 HAR2 H 0 0 N N N 24.302 53.629 41.488 7.495   3.192  1.112  HAR2 OKD 58 
OKD HAS1 HAS1 H 0 0 N N N 26.697 51.601 41.562 6.020   4.572  -0.272 HAS1 OKD 59 
OKD HAS2 HAS2 H 0 0 N N N 24.986 51.118 42.091 6.475   3.113  -1.183 HAS2 OKD 60 
OKD HAX1 HAX1 H 0 0 N N N 25.891 49.994 38.498 3.984   4.775  -1.614 HAX1 OKD 61 
OKD HAX2 HAX2 H 0 0 N N N 26.891 50.033 40.156 4.440   3.316  -2.525 HAX2 OKD 62 
OKD HAI  HAI  H 0 1 N N N 24.986 48.918 42.047 2.238   2.065  0.115  HAI  OKD 63 
OKD HAW1 HAW1 H 0 0 N N N 24.921 45.312 42.308 -0.825  0.804  -1.210 HAW1 OKD 64 
OKD HAW2 HAW2 H 0 0 N N N 24.289 46.838 43.084 -0.170  1.258  0.382  HAW2 OKD 65 
OKD HAK1 HAK1 H 0 0 N N N 22.249 46.540 41.574 -1.417  3.400  0.283  HAK1 OKD 66 
OKD HAK2 HAK2 H 0 0 N N N 22.850 44.862 41.303 -2.071  2.945  -1.308 HAK2 OKD 67 
OKD HAJ1 HAJ1 H 0 0 N N N 22.359 44.191 43.506 -3.146  0.953  -0.297 HAJ1 OKD 68 
OKD HAJ2 HAJ2 H 0 0 N N N 22.732 45.774 44.203 -2.491  1.407  1.294  HAJ2 OKD 69 
OKD HB1C HB1C H 0 0 N N N 20.641 46.730 43.443 -3.738  3.549  1.196  HB1C OKD 70 
OKD HB2C HB2C H 0 0 N N N 20.354 45.302 42.325 -4.392  3.094  -0.396 HB2C OKD 71 
OKD HA   HA   H 0 1 N N N 20.063 43.878 44.526 -4.787  1.481  2.164  HA   OKD 72 
OKD H    H    H 0 1 N N N 18.036 46.029 44.270 -5.548  0.985  -0.612 H    OKD 73 
OKD HXT  HXT  H 0 1 N Y N 20.765 45.418 47.405 -6.834  4.495  2.583  HXT  OKD 74 
OKD HBB  HBB  H 0 1 N N N 16.122 45.460 43.298 -6.590  -1.078 -0.935 HBB  OKD 75 
OKD HBN  HBN  H 0 1 N N N 15.777 43.187 41.773 -7.915  -2.099 1.458  HBN  OKD 76 
OKD HAV1 HAV1 H 0 0 N N N 14.418 44.667 40.105 -7.719  -3.162 -1.395 HAV1 OKD 77 
OKD HAV2 HAV2 H 0 0 N N N 13.899 44.718 41.841 -8.689  -3.909 -0.103 HAV2 OKD 78 
OKD HAD  HAD  H 0 1 N N N 18.410 45.346 39.637 -5.940  -5.180 1.698  HAD  OKD 79 
OKD HAT1 HAT1 H 0 0 N N N 14.909 46.861 42.193 -9.973  -1.804 0.151  HAT1 OKD 80 
OKD HAT2 HAT2 H 0 0 N N N 15.812 46.746 40.593 -9.004  -1.056 -1.141 HAT2 OKD 81 
OKD HAB  HAB  H 0 1 N N N 12.294 47.324 39.368 -11.977 -2.320 -2.876 HAB  OKD 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
OKD CAA OBC  SING N N 1  
OKD OBC CAL  SING N N 2  
OKD CAL CAM  SING N N 3  
OKD CAM OBD  SING N N 4  
OKD OBD CAN  SING N N 5  
OKD CAN CAO  SING N N 6  
OKD CAO OBE  SING N N 7  
OKD OBE CAP  SING N N 8  
OKD CAP CAQ  SING N N 9  
OKD CAQ OBF  SING N N 10 
OKD OBF CAR  SING N N 11 
OKD CAR CAS  SING N N 12 
OKD CAS OBG  SING N N 13 
OKD OBG CAX  SING N N 14 
OKD CAX CBL  SING N N 15 
OKD CBL CAI  DOUB Y N 16 
OKD CBL NAY  SING Y N 17 
OKD CAI NBO  SING Y N 18 
OKD NAY NAZ  DOUB Y N 19 
OKD NAZ NBO  SING Y N 20 
OKD NBO CAW  SING N N 21 
OKD CAW CAK  SING N N 22 
OKD CAK CAJ  SING N N 23 
OKD CAJ CB   SING N N 24 
OKD CB  CA   SING N N 25 
OKD CA  C    SING N N 26 
OKD CA  N    SING N N 27 
OKD C   OXT  SING N N 28 
OKD C   O    DOUB N N 29 
OKD N   CBK  SING N N 30 
OKD CBK OAE  DOUB N N 31 
OKD CBK NBB  SING N N 32 
OKD NBB CBN  SING N N 33 
OKD CBN CBJ  SING N N 34 
OKD CBN CAV  SING N N 35 
OKD CBJ OAH  DOUB N N 36 
OKD CBJ OAD  SING N N 37 
OKD CAV CAT  SING N N 38 
OKD CAT CBH  SING N N 39 
OKD CBH OAF  DOUB N N 40 
OKD CBH OAB  SING N N 41 
OKD CAA HAA1 SING N N 42 
OKD CAA HAA2 SING N N 43 
OKD CAA HAA3 SING N N 44 
OKD CAL HAL1 SING N N 45 
OKD CAL HAL2 SING N N 46 
OKD CAM HAM1 SING N N 47 
OKD CAM HAM2 SING N N 48 
OKD CAN HAN1 SING N N 49 
OKD CAN HAN2 SING N N 50 
OKD CAO HAO1 SING N N 51 
OKD CAO HAO2 SING N N 52 
OKD CAP HAP1 SING N N 53 
OKD CAP HAP2 SING N N 54 
OKD CAQ HAQ1 SING N N 55 
OKD CAQ HAQ2 SING N N 56 
OKD CAR HAR1 SING N N 57 
OKD CAR HAR2 SING N N 58 
OKD CAS HAS1 SING N N 59 
OKD CAS HAS2 SING N N 60 
OKD CAX HAX1 SING N N 61 
OKD CAX HAX2 SING N N 62 
OKD CAI HAI  SING N N 63 
OKD CAW HAW1 SING N N 64 
OKD CAW HAW2 SING N N 65 
OKD CAK HAK1 SING N N 66 
OKD CAK HAK2 SING N N 67 
OKD CAJ HAJ1 SING N N 68 
OKD CAJ HAJ2 SING N N 69 
OKD CB  HB1C SING N N 70 
OKD CB  HB2C SING N N 71 
OKD CA  HA   SING N N 72 
OKD N   H    SING N N 73 
OKD OXT HXT  SING N N 74 
OKD NBB HBB  SING N N 75 
OKD CBN HBN  SING N N 76 
OKD CAV HAV1 SING N N 77 
OKD CAV HAV2 SING N N 78 
OKD OAD HAD  SING N N 79 
OKD CAT HAT1 SING N N 80 
OKD CAT HAT2 SING N N 81 
OKD OAB HAB  SING N N 82 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
OKD SMILES           ACDLabs              10.04 "O=C(O)C(NC(=O)NC(C(=O)O)CCCCn1nnc(c1)COCCOCCOCCOCCOC)CCC(=O)O" 
OKD SMILES_CANONICAL CACTVS               3.352 "COCCOCCOCCOCCOCc1cn(CCCC[C@H](NC(=O)N[C@@H](CCC(O)=O)C(O)=O)C(O)=O)nn1" 
OKD SMILES           CACTVS               3.352 "COCCOCCOCCOCCOCc1cn(CCCC[CH](NC(=O)N[CH](CCC(O)=O)C(O)=O)C(O)=O)nn1" 
OKD SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "COCCOCCOCCOCCOCc1cn(nn1)CCCC[C@@H](C(=O)O)NC(=O)N[C@@H](CCC(=O)O)C(=O)O" 
OKD SMILES           "OpenEye OEToolkits" 1.6.1 "COCCOCCOCCOCCOCc1cn(nn1)CCCCC(C(=O)O)NC(=O)NC(CCC(=O)O)C(=O)O" 
OKD InChI            InChI                1.03  
"InChI=1S/C24H41N5O12/c1-37-8-9-38-10-11-39-12-13-40-14-15-41-17-18-16-29(28-27-18)7-3-2-4-19(22(32)33)25-24(36)26-20(23(34)35)5-6-21(30)31/h16,19-20H,2-15,17H2,1H3,(H,30,31)(H,32,33)(H,34,35)(H2,25,26,36)/t19-,20-/m0/s1" 
OKD InChIKey         InChI                1.03  USQOBCXXBZGYAH-PMACEKPBSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
OKD "SYSTEMATIC NAME" ACDLabs              10.04 "N-({(1S)-1-carboxy-5-[4-(2,5,8,11,14-pentaoxapentadec-1-yl)-1H-1,2,3-triazol-1-yl]pentyl}carbamoyl)-L-glutamic acid"                                      
OKD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-[[(2S)-1-hydroxy-6-[4-[2-[2-[2-(2-methoxyethoxy)ethoxy]ethoxy]ethoxymethyl]-1,2,3-triazol-1-yl]-1-oxo-hexan-2-yl]carbamoylamino]pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
OKD "Create component"     2010-05-14 EBI  
OKD "Modify aromatic_flag" 2011-06-04 RCSB 
OKD "Modify descriptor"    2011-06-04 RCSB 
# 
