data_NND
#

_chem_comp.id                                   NND
_chem_comp.name                                 "(2R,3R,4R,5S)-2-(HYDROXYMETHYL)-1-NONYLPIPERIDINE-3,4,5-TRIOL"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H31 N O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        N-NONYL-DEOXYNOJIRIMYCIN
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-06-18
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       289.411
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NND
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "Corina V3.40"
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NND  O6    O6    O  0  1  N  N  N  34.726  34.349   -1.162  -2.648   2.662   1.173  O6    NND   1  
NND  C6    C6    C  0  1  N  N  N  33.904  33.517   -0.292  -2.683   2.474  -0.243  C6    NND   2  
NND  C5    C5    C  0  1  N  N  R  34.692  32.358    0.388  -2.917   0.995  -0.556  C5    NND   3  
NND  C4    C4    C  0  1  N  N  R  35.907  32.828    1.212  -4.205   0.527   0.124  C4    NND   4  
NND  O4    O4    O  0  1  N  N  N  35.474  33.862    2.100  -5.310   1.282  -0.377  O4    NND   5  
NND  O3    O3    O  0  1  N  N  N  37.804  32.037    2.625  -5.596  -1.415   0.503  O3    NND   6  
NND  C2    C2    C  0  1  N  N  S  37.043  30.551    0.924  -3.209  -1.753   0.311  C2    NND   7  
NND  O2    O2    O  0  1  N  N  N  37.211  29.303    1.629  -3.380  -3.134  -0.015  O2    NND   8  
NND  N1    N1    N  0  1  N  N  N  35.297  31.503   -0.643  -1.784   0.205  -0.057  N1    NND   9  
NND  C8    C8    C  0  1  N  N  N  34.417  31.361   -1.813  -0.512   0.718  -0.583  C8    NND  10  
NND  C7    C7    C  0  1  N  N  N  35.087  30.419   -2.780   0.651  -0.013   0.092  C7    NND  11  
NND  C1    C1    C  0  1  N  N  N  35.940  30.290   -0.096  -1.949  -1.219  -0.374  C1    NND  12  
NND  C9    C9    C  0  1  N  N  N  34.541  30.759   -4.160   1.976   0.522  -0.456  C9    NND  13  
NND  C10   C10   C  0  1  N  N  N  35.132  29.894   -5.271   3.138  -0.209   0.219  C10   NND  14  
NND  C14   C14   C  0  1  N  N  N  34.396  30.356   -6.540   4.463   0.325  -0.329  C14   NND  15  
NND  C13   C13   C  0  1  N  N  N  35.210  30.024   -7.785   5.626  -0.405   0.345  C13   NND  16  
NND  C12   C12   C  0  1  N  N  N  35.816  31.288   -8.366   6.951   0.129  -0.203  C12   NND  17  
NND  C16   C16   C  0  1  N  N  N  38.112  31.666   -9.096   9.438  -0.067  -0.076  C16   NND  18  
NND  C11   C11   C  0  1  N  N  N  36.837  30.937   -9.439   8.113  -0.601   0.472  C11   NND  19  
NND  C31   C31   C  0  1  N  N  R  36.611  31.642    1.916  -4.424  -0.959  -0.175  C31   NND  20  
NND  H6    H6    H  0  1  N  N  N  34.905  35.177   -0.732  -2.503   3.579   1.445  H6    NND  21  
NND  H6C1  1H6C  H  0  0  N  N  N  33.486  34.157    0.499  -3.493   3.068  -0.668  H6C1  NND  22  
NND  H6C2  2H6C  H  0  0  N  N  N  33.127  33.057   -0.921  -1.735   2.792  -0.675  H6C2  NND  23  
NND  H5    H5    H  0  1  N  N  N  33.952  31.860    1.032  -3.005   0.862  -1.634  H5    NND  24  
NND  H4    H4    H  0  1  N  N  N  36.681  33.251    0.554  -4.123   0.674   1.201  H4    NND  25  
NND  HA    HA    H  0  1  N  N  N  35.378  33.508    2.976  -6.162   1.038   0.011  HA    NND  26  
NND  H31   H31   H  0  1  N  N  N  35.856  31.261    2.620  -4.547  -1.100  -1.249  H31   NND  27  
NND  H3    H3    H  0  1  N  N  N  38.524  32.124    2.011  -5.795  -2.350   0.358  H3    NND  28  
NND  H2    H2    H  0  1  N  N  N  37.970  30.891    0.439  -3.110  -1.644   1.391  H2    NND  29  
NND  HB    HB    H  0  1  N  N  N  37.248  28.588    1.004  -2.645  -3.698   0.261  HB    NND  30  
NND  H1C1  1H1C  H  0  0  N  N  N  36.386  29.740   -0.938  -1.080  -1.773  -0.020  H1C1  NND  31  
NND  H1C2  2H1C  H  0  0  N  N  N  35.153  29.732    0.433  -2.042  -1.342  -1.453  H1C2  NND  32  
NND  H8C1  1H8C  H  0  0  N  N  N  33.442  30.955   -1.505  -0.470   0.551  -1.659  H8C1  NND  33  
NND  H8C2  2H8C  H  0  0  N  N  N  34.246  32.339   -2.286  -0.438   1.786  -0.378  H8C2  NND  34  
NND  H7C1  1H7C  H  0  0  N  N  N  36.179  30.552   -2.754   0.609   0.155   1.168  H7C1  NND  35  
NND  H7C2  2H7C  H  0  0  N  N  N  34.882  29.370   -2.519   0.577  -1.081  -0.113  H7C2  NND  36  
NND  H9C1  1H9C  H  0  0  N  N  N  33.452  30.606   -4.147   2.017   0.354  -1.533  H9C1  NND  37  
NND  H9C2  2H9C  H  0  0  N  N  N  34.816  31.802   -4.374   2.050   1.590  -0.251  H9C2  NND  38  
NND  H101  1H10  H  0  0  N  N  N  36.218  30.047   -5.361   3.097  -0.042   1.295  H101  NND  39  
NND  H102  2H10  H  0  0  N  N  N  35.002  28.819   -5.079   3.065  -1.277   0.014  H102  NND  40  
NND  H141  1H14  H  0  0  N  N  N  33.424  29.844   -6.599   4.505   0.158  -1.406  H141  NND  41  
NND  H142  2H14  H  0  0  N  N  N  34.253  31.445   -6.490   4.537   1.393  -0.124  H142  NND  42  
NND  H131  1H13  H  0  0  N  N  N  36.016  29.326   -7.515   5.584  -0.238   1.422  H131  NND  43  
NND  H132  2H13  H  0  0  N  N  N  34.549  29.564   -8.535   5.552  -1.473   0.141  H132  NND  44  
NND  H121  1H12  H  0  0  N  N  N  35.018  31.900   -8.812   6.992  -0.038  -1.279  H121  NND  45  
NND  H122  2H12  H  0  0  N  N  N  36.317  31.848   -7.563   7.025   1.197   0.002  H122  NND  46  
NND  H111  1H11  H  0  0  N  N  N  37.012  29.851   -9.457   8.072  -0.434   1.549  H111  NND  47  
NND  H112  2H11  H  0  0  N  N  N  36.474  31.234  -10.434   8.040  -1.669   0.267  H112  NND  48  
NND  H161  1H16  H  0  0  N  N  N  38.692  31.843  -10.014   9.480  -0.234  -1.152  H161  NND  49  
NND  H162  2H16  H  0  0  N  N  N  37.868  32.629   -8.625   9.512   1.001   0.129  H162  NND  50  
NND  H163  3H16  H  0  0  N  N  N  38.706  31.057   -8.399  10.267  -0.588   0.405  H163  NND  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NND  O6   C6    SING  N  N   1  
NND  O6   H6    SING  N  N   2  
NND  C6   C5    SING  N  N   3  
NND  C6   H6C1  SING  N  N   4  
NND  C6   H6C2  SING  N  N   5  
NND  C5   C4    SING  N  N   6  
NND  C5   N1    SING  N  N   7  
NND  C5   H5    SING  N  N   8  
NND  C4   O4    SING  N  N   9  
NND  C4   C31   SING  N  N  10  
NND  C4   H4    SING  N  N  11  
NND  O4   HA    SING  N  N  12  
NND  O3   C31   SING  N  N  13  
NND  O3   H3    SING  N  N  14  
NND  C2   O2    SING  N  N  15  
NND  C2   C1    SING  N  N  16  
NND  C2   C31   SING  N  N  17  
NND  C2   H2    SING  N  N  18  
NND  O2   HB    SING  N  N  19  
NND  N1   C8    SING  N  N  20  
NND  N1   C1    SING  N  N  21  
NND  C8   C7    SING  N  N  22  
NND  C8   H8C1  SING  N  N  23  
NND  C8   H8C2  SING  N  N  24  
NND  C7   C9    SING  N  N  25  
NND  C7   H7C1  SING  N  N  26  
NND  C7   H7C2  SING  N  N  27  
NND  C1   H1C1  SING  N  N  28  
NND  C1   H1C2  SING  N  N  29  
NND  C9   C10   SING  N  N  30  
NND  C9   H9C1  SING  N  N  31  
NND  C9   H9C2  SING  N  N  32  
NND  C10  C14   SING  N  N  33  
NND  C10  H101  SING  N  N  34  
NND  C10  H102  SING  N  N  35  
NND  C14  C13   SING  N  N  36  
NND  C14  H141  SING  N  N  37  
NND  C14  H142  SING  N  N  38  
NND  C13  C12   SING  N  N  39  
NND  C13  H131  SING  N  N  40  
NND  C13  H132  SING  N  N  41  
NND  C12  C11   SING  N  N  42  
NND  C12  H121  SING  N  N  43  
NND  C12  H122  SING  N  N  44  
NND  C16  C11   SING  N  N  45  
NND  C16  H161  SING  N  N  46  
NND  C16  H162  SING  N  N  47  
NND  C16  H163  SING  N  N  48  
NND  C11  H111  SING  N  N  49  
NND  C11  H112  SING  N  N  50  
NND  C31  H31   SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NND  SMILES            ACDLabs               10.04  "OCC1N(CCCCCCCCC)CC(O)C(O)C1O"  
NND  SMILES_CANONICAL  CACTVS                3.341  "CCCCCCCCCN1C[C@H](O)[C@@H](O)[C@H](O)[C@H]1CO"  
NND  SMILES            CACTVS                3.341  "CCCCCCCCCN1C[CH](O)[CH](O)[CH](O)[CH]1CO"  
NND  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CCCCCCCCC[N@@]1C[C@@H]([C@H]([C@@H]([C@H]1CO)O)O)O"  
NND  SMILES            "OpenEye OEToolkits"  1.5.0  "CCCCCCCCCN1CC(C(C(C1CO)O)O)O"  
NND  InChI             InChI                 1.03   "InChI=1S/C15H31NO4/c1-2-3-4-5-6-7-8-9-16-10-13(18)15(20)14(19)12(16)11-17/h12-15,17-20H,2-11H2,1H3/t12-,13+,14-,15-/m1/s1"  
NND  InChIKey          InChI                 1.03   FTSCEGKYKXESFF-LXTVHRRPSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NND  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-nonylpiperidine-3,4,5-triol"  
NND  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(1R,2R,3R,4R,5S)-2-(hydroxymethyl)-1-nonyl-piperidine-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NND  "Create component"   2007-06-18  RCSB  
NND  "Modify descriptor"  2011-06-04  RCSB  
NND  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     NND
_pdbx_chem_comp_synonyms.name        N-NONYL-DEOXYNOJIRIMYCIN
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
